==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PRION PROTEIN 15-APR-02 1LG4 . COMPND 2 MOLECULE: PRION-LIKE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.LUHRS,R.RIEK,P.GUNTERT,K.WUTHRICH . 99 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6528.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 55.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 34.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 52 A A 0 0 98 0, 0.0 3,-0.2 0, 0.0 6,-0.1 0.000 360.0 360.0 360.0 -34.8 1.1 -14.9 -4.9 2 53 A E + 0 0 117 1,-0.3 2,-0.7 5,-0.1 5,-0.5 0.645 360.0 86.5 -72.0 -14.8 0.8 -12.0 -2.4 3 54 A N + 0 0 157 3,-0.1 -1,-0.3 2,-0.1 37,-0.0 -0.055 64.4 120.1 -80.1 34.9 4.6 -11.6 -2.1 4 55 A R S > S- 0 0 111 -2,-0.7 3,-0.8 -3,-0.2 37,-0.2 -0.678 83.6-109.8 -76.6 160.3 4.4 -9.2 -5.1 5 56 A P T 3 S+ 0 0 64 0, 0.0 56,-0.3 0, 0.0 55,-0.2 0.082 117.6 24.4 -74.6 24.5 5.5 -5.6 -4.6 6 57 A G T 3 S+ 0 0 0 -4,-0.2 59,-0.3 54,-0.2 58,-0.1 0.320 79.3 153.0-177.1 12.7 1.8 -4.7 -4.9 7 58 A A < - 0 0 8 -3,-0.8 2,-0.5 -5,-0.5 32,-0.5 -0.371 48.7-116.1 -58.8 140.9 -0.5 -7.6 -3.9 8 59 A F - 0 0 17 1,-0.2 30,-0.2 30,-0.1 -1,-0.1 -0.708 13.5-152.8 -80.1 121.7 -3.9 -6.6 -2.6 9 60 A I + 0 0 49 28,-2.4 -1,-0.2 -2,-0.5 29,-0.1 0.898 27.0 179.4 -62.7 -43.6 -4.3 -7.7 1.1 10 61 A K + 0 0 85 27,-0.4 -1,-0.1 1,-0.1 -2,-0.1 0.672 14.4 164.9 61.5 32.0 -8.0 -7.8 0.4 11 62 A Q - 0 0 125 1,-0.1 -1,-0.1 26,-0.0 21,-0.1 0.618 59.3-101.0 -59.9 -17.6 -9.4 -9.0 3.8 12 63 A G S S+ 0 0 43 22,-0.5 2,-0.2 19,-0.2 20,-0.2 0.910 73.0 127.4 95.9 69.4 -13.0 -8.0 2.9 13 64 A R - 0 0 104 18,-0.4 21,-0.2 21,-0.3 -1,-0.2 -0.850 60.1-127.6-145.1 177.3 -13.8 -4.6 4.6 14 65 A K - 0 0 87 -2,-0.2 3,-0.3 1,-0.1 14,-0.1 0.426 44.4-158.4-112.1 -3.0 -15.1 -1.0 3.9 15 66 A L - 0 0 50 1,-0.2 -1,-0.1 16,-0.0 21,-0.0 0.130 26.3 -94.4 48.4-167.1 -12.2 1.0 5.5 16 67 A D S S+ 0 0 150 2,-0.0 2,-0.5 0, 0.0 -1,-0.2 -0.079 70.4 132.5-138.4 21.5 -12.3 4.7 6.7 17 68 A I - 0 0 26 -3,-0.3 2,-0.9 7,-0.0 67,-0.1 -0.776 55.2-131.9 -94.3 123.1 -11.0 6.7 3.7 18 69 A D + 0 0 145 -2,-0.5 3,-0.1 1,-0.2 -2,-0.0 -0.653 35.4 165.7 -79.2 102.3 -13.1 9.8 2.7 19 70 A F - 0 0 38 -2,-0.9 4,-0.2 1,-0.3 -1,-0.2 0.673 44.7-116.0 -84.0 -23.4 -13.6 9.4 -1.1 20 71 A G > - 0 0 33 1,-0.2 4,-2.8 2,-0.1 -1,-0.3 -0.268 50.7 -49.0 83.7 171.3 -16.3 11.9 -1.7 21 72 A A H > S+ 0 0 75 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.855 127.8 34.7 -49.3 -76.1 -19.8 11.1 -2.9 22 73 A E H > S+ 0 0 109 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.890 122.1 48.4 -60.5 -39.3 -19.8 8.8 -6.0 23 74 A G H > S+ 0 0 6 -4,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.952 112.9 45.2 -60.5 -56.8 -16.7 6.9 -4.8 24 75 A N H X S+ 0 0 64 -4,-2.8 4,-2.6 1,-0.2 -2,-0.2 0.915 114.3 49.0 -61.8 -42.9 -17.9 6.3 -1.2 25 76 A R H X S+ 0 0 188 -4,-2.6 4,-1.0 -5,-0.2 -1,-0.2 0.904 113.0 46.8 -63.7 -43.1 -21.4 5.2 -2.3 26 77 A Y H X S+ 0 0 85 -4,-2.1 4,-1.2 -5,-0.3 3,-0.4 0.897 110.4 54.3 -66.4 -37.0 -20.0 2.8 -4.9 27 78 A Y H >X S+ 0 0 8 -4,-2.7 3,-1.2 1,-0.2 4,-0.7 0.972 105.6 52.1 -56.1 -55.3 -17.5 1.5 -2.4 28 79 A E H 3< S+ 0 0 106 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.741 107.2 55.7 -54.0 -26.2 -20.4 0.7 0.1 29 80 A A H 3< S+ 0 0 71 -4,-1.0 -1,-0.3 -3,-0.4 -2,-0.2 0.856 130.9 3.7 -76.3 -33.8 -22.1 -1.2 -2.7 30 81 A N H X< S+ 0 0 28 -3,-1.2 3,-1.4 -4,-1.2 -2,-0.2 -0.208 76.8 141.5-150.9 41.2 -19.2 -3.7 -3.6 31 82 A Y G >< + 0 0 79 -4,-0.7 3,-2.1 1,-0.3 -18,-0.4 0.719 61.1 74.9 -67.6 -27.2 -16.4 -3.1 -1.1 32 83 A W G 3 S+ 0 0 141 1,-0.3 -1,-0.3 -20,-0.2 -18,-0.1 0.641 88.1 65.7 -61.4 -13.0 -15.4 -6.8 -0.7 33 84 A Q G < S+ 0 0 63 -3,-1.4 -1,-0.3 -6,-0.2 -2,-0.2 0.541 94.3 75.9 -85.7 -5.5 -13.8 -6.5 -4.1 34 85 A F S < S- 0 0 4 -3,-2.1 -22,-0.5 -21,-0.2 -21,-0.3 -0.560 81.7 -98.6-112.6 163.2 -11.1 -4.0 -2.9 35 86 A P - 0 0 2 0, 0.0 -1,-0.1 0, 0.0 -22,-0.1 -0.189 6.2-152.3 -74.9 168.0 -7.8 -4.2 -0.8 36 87 A D S S- 0 0 35 1,-0.5 2,-0.2 -24,-0.1 -28,-0.1 0.660 77.8 -38.7-101.4 -34.0 -7.1 -3.5 2.9 37 88 A G - 0 0 13 -30,-0.1 -28,-2.4 52,-0.0 -1,-0.5 -0.887 63.1-102.8-175.8-174.2 -3.5 -2.5 2.3 38 89 A I - 0 0 27 50,-0.3 -30,-0.1 -2,-0.2 4,-0.1 -0.756 9.9-139.4-126.5 167.7 -0.4 -3.5 0.2 39 90 A H + 0 0 69 -32,-0.5 2,-1.8 -2,-0.2 -33,-0.2 -0.370 41.6 151.3-125.6 47.1 2.9 -5.5 0.9 40 91 A Y S S- 0 0 59 -35,-0.2 17,-0.1 1,-0.2 -37,-0.1 -0.192 80.1 -87.7 -80.4 47.5 5.3 -3.2 -1.1 41 92 A N - 0 0 139 -2,-1.8 2,-2.2 -37,-0.2 -1,-0.2 0.755 63.5 -91.1 50.2 31.1 8.2 -4.1 1.2 42 93 A G S S- 0 0 69 1,-0.1 -1,-0.2 -4,-0.1 -2,-0.1 -0.420 71.8 -74.9 75.7 -60.2 7.2 -1.3 3.6 43 94 A a - 0 0 14 -2,-2.2 2,-0.3 51,-0.0 -2,-0.1 0.174 46.6-173.4 125.9 110.5 9.4 1.4 1.9 44 95 A S + 0 0 106 -2,-0.1 2,-0.3 51,-0.1 -2,-0.0 -0.703 42.4 119.9-124.6 74.4 13.2 1.5 2.4 45 96 A E - 0 0 90 -2,-0.3 51,-0.6 3,-0.1 3,-0.4 -0.923 43.4-165.5-139.8 117.9 14.2 4.7 0.6 46 97 A A S S+ 0 0 78 -2,-0.3 -1,-0.0 1,-0.3 -2,-0.0 0.178 91.9 38.4 -81.5 8.3 15.9 7.5 2.6 47 98 A N S S+ 0 0 126 2,-0.1 2,-0.4 50,-0.0 -1,-0.3 -0.437 81.2 131.7-166.7 69.9 15.2 9.9 -0.3 48 99 A V - 0 0 6 -3,-0.4 49,-0.2 4,-0.0 2,-0.1 -0.999 40.2-145.6-133.0 140.6 11.8 9.3 -1.9 49 100 A T >> - 0 0 89 -2,-0.4 4,-3.0 1,-0.1 3,-0.6 -0.456 31.6-111.4 -87.9 166.7 9.0 11.7 -2.9 50 101 A K H 3>>S+ 0 0 98 1,-0.2 4,-1.8 2,-0.2 5,-0.9 0.963 121.4 52.8 -62.7 -46.2 5.3 10.8 -2.6 51 102 A E H 345S+ 0 0 137 1,-0.2 -1,-0.2 2,-0.2 -3,-0.0 0.549 115.7 42.3 -69.7 -9.3 5.1 10.9 -6.4 52 103 A A H <>5S+ 0 0 45 -3,-0.6 4,-2.2 3,-0.1 -2,-0.2 0.845 119.2 40.9 -89.0 -61.7 8.0 8.5 -6.5 53 104 A F H X5S+ 0 0 13 -4,-3.0 4,-1.9 2,-0.2 3,-0.2 0.920 120.5 35.1 -57.2 -66.8 7.0 6.1 -3.6 54 105 A V H X5S+ 0 0 4 -4,-1.8 4,-1.9 1,-0.3 -1,-0.2 0.899 115.8 58.4 -68.5 -36.7 3.3 5.5 -4.0 55 106 A T H >X S+ 0 0 17 -4,-1.5 3,-1.3 -5,-0.3 4,-1.2 0.929 113.8 50.0 -79.5 -58.7 3.8 -2.6 -9.2 61 112 A T H 3X S+ 0 0 0 -4,-3.4 4,-2.3 -56,-0.3 3,-0.3 0.818 101.2 62.4 -57.5 -36.9 0.1 -3.2 -8.1 62 113 A Q H 3< S+ 0 0 77 -4,-2.6 -1,-0.3 1,-0.3 7,-0.2 0.881 115.3 34.7 -57.9 -36.3 -1.3 -2.7 -11.6 63 114 A A H <4 S+ 0 0 66 -3,-1.3 -1,-0.3 -4,-0.4 -2,-0.3 0.553 113.7 62.9 -89.9 -13.8 0.8 -5.8 -12.6 64 115 A A H < S+ 0 0 16 -4,-1.2 3,-0.2 -3,-0.3 -2,-0.2 0.984 119.9 18.0 -69.0 -62.1 0.2 -7.5 -9.1 65 116 A N S >X S+ 0 0 27 -4,-2.3 3,-3.4 -59,-0.3 4,-0.6 -0.174 74.5 157.9-111.9 39.8 -3.5 -7.8 -9.3 66 117 A Q T 34 + 0 0 112 1,-0.3 -1,-0.2 -3,-0.2 -2,-0.1 0.707 67.1 68.3 -33.7 -47.7 -4.2 -7.5 -13.1 67 118 A G T 34 S+ 0 0 45 1,-0.2 3,-0.3 -3,-0.2 -1,-0.3 0.614 101.3 48.3 -53.1 -20.9 -7.5 -9.3 -12.8 68 119 A E T X4 S+ 0 0 24 -3,-3.4 2,-1.4 1,-0.2 3,-0.7 0.937 106.6 53.8 -80.7 -57.9 -9.0 -6.3 -10.8 69 120 A F T 3< S+ 0 0 53 -4,-0.6 -1,-0.2 1,-0.3 -2,-0.2 -0.010 100.5 66.8 -69.0 31.4 -7.7 -3.6 -13.2 70 121 A Q T 3 + 0 0 141 -2,-1.4 -1,-0.3 -3,-0.3 -3,-0.1 -0.175 67.0 152.3-135.3 39.0 -9.5 -5.4 -16.2 71 122 A K < - 0 0 70 -3,-0.7 -3,-0.1 1,-0.1 -2,-0.0 -0.374 48.4-132.0 -62.7 154.6 -13.1 -4.9 -15.2 72 123 A P S S- 0 0 113 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 0.734 88.8 -19.8 -78.0 -23.7 -15.6 -4.9 -18.1 73 124 A D S S+ 0 0 146 1,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.008 80.2 133.0-143.2-106.6 -17.4 -1.8 -16.8 74 125 A N >> + 0 0 41 -2,-0.1 3,-2.3 3,-0.1 4,-0.6 0.650 28.9 175.6 56.1 28.6 -17.0 -0.8 -13.1 75 126 A K H >> S+ 0 0 124 1,-0.3 3,-1.4 2,-0.2 4,-0.9 0.737 75.5 44.7 -26.2 -65.8 -16.3 3.0 -13.8 76 127 A L H 3> S+ 0 0 23 1,-0.3 4,-2.6 2,-0.2 -1,-0.3 0.718 96.3 76.1 -67.7 -21.1 -16.1 4.2 -10.2 77 128 A H H <> S+ 0 0 15 -3,-2.3 4,-2.8 2,-0.2 5,-0.3 0.866 96.4 51.0 -56.2 -34.1 -14.0 1.2 -9.2 78 129 A Q H X S+ 0 0 47 -4,-2.5 4,-1.9 -3,-0.5 3,-1.5 0.952 112.5 55.7 -63.9 -44.1 -3.7 6.2 0.4 88 139 A L H 3< S+ 0 0 29 -4,-2.7 -50,-0.3 1,-0.3 -1,-0.2 0.777 116.0 38.7 -55.1 -29.3 -2.7 2.5 1.2 89 140 A b H 3< S+ 0 0 7 -4,-1.5 -1,-0.3 -3,-0.3 -2,-0.2 0.409 123.1 40.7-106.2 -0.1 0.7 3.4 -0.4 90 141 A S H << S+ 0 0 10 -3,-1.5 -3,-0.2 -4,-0.6 -2,-0.2 0.791 78.8 138.9-102.6 -66.1 1.0 6.9 1.0 91 142 A L S < S- 0 0 76 -4,-1.9 3,-0.1 1,-0.1 -3,-0.1 0.059 78.3 -29.3 45.9-163.9 -0.3 6.7 4.6 92 143 A K S S- 0 0 172 1,-0.2 2,-0.3 2,-0.0 -1,-0.1 0.933 112.8 -69.4 -29.0 -81.0 1.3 8.6 7.6 93 144 A H - 0 0 63 1,-0.2 -1,-0.2 5,-0.1 5,-0.1 -0.943 30.2-119.8-165.2 179.4 4.8 8.4 6.0 94 145 A a - 0 0 20 3,-0.4 -1,-0.2 -2,-0.3 -48,-0.1 0.797 63.6 -80.5 -86.8 -89.7 7.6 6.0 5.0 95 146 A E S S+ 0 0 127 -50,-0.3 -49,-0.1 3,-0.1 -51,-0.1 0.510 111.4 48.8-144.4 -69.5 10.8 7.1 6.9 96 147 A F S S+ 0 0 113 -51,-0.6 2,-0.4 2,-0.0 -50,-0.1 0.861 113.5 50.7 -62.4 -41.2 13.1 9.9 5.8 97 148 A W S S+ 0 0 54 -49,-0.2 -3,-0.4 -48,-0.0 2,-0.3 -0.852 81.8 160.2 -90.1 130.3 10.1 12.3 5.3 98 149 A L 0 0 118 -2,-0.4 -5,-0.1 -5,-0.1 -3,-0.1 -0.961 360.0 360.0-148.3 162.0 7.9 12.2 8.4 99 150 A E 0 0 210 -2,-0.3 -6,-0.0 0, 0.0 -7,-0.0 -0.510 360.0 360.0 -62.0 360.0 5.2 14.2 10.2