==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-AUG-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 06-AUG-11 2LH9 . COMPND 2 MOLECULE: TUDOR DOMAIN-CONTAINING PROTEIN 7; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR G.CUI,M.BOTUYAN,G.MER . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4866.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 64.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 11.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 38.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -2 A G 0 0 135 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 149.7 6.4 -0.5 -1.6 2 -1 A H - 0 0 138 0, 0.0 6,-0.0 0, 0.0 2,-0.0 -0.887 360.0 -64.9-148.3 176.3 3.2 -2.6 -2.2 3 34 A M - 0 0 58 -2,-0.3 2,-0.1 1,-0.1 6,-0.0 -0.339 49.9-114.5 -64.7 148.7 1.5 -5.5 -0.4 4 35 A L > - 0 0 144 1,-0.1 4,-3.1 4,-0.0 3,-0.3 -0.438 42.0 -95.7 -73.5 162.7 3.2 -9.0 -0.2 5 36 A E H > S+ 0 0 125 1,-0.3 4,-2.5 2,-0.2 5,-0.3 0.904 123.4 42.0 -54.5 -54.1 1.4 -11.7 -2.2 6 37 A A H > S+ 0 0 53 1,-0.2 4,-1.8 2,-0.2 -1,-0.3 0.847 119.0 46.2 -65.7 -32.7 -0.6 -13.2 0.6 7 38 A D H > S+ 0 0 65 -3,-0.3 4,-3.0 2,-0.2 5,-0.3 0.880 111.4 52.8 -75.2 -35.9 -1.5 -9.7 2.0 8 39 A L H X S+ 0 0 40 -4,-3.1 4,-2.7 2,-0.2 5,-0.3 0.959 112.2 43.3 -60.5 -54.9 -2.4 -8.4 -1.5 9 40 A V H X S+ 0 0 1 -4,-2.5 4,-2.7 -5,-0.2 5,-0.2 0.914 116.2 49.4 -65.0 -39.3 -4.8 -11.2 -2.2 10 41 A S H X S+ 0 0 35 -4,-1.8 4,-2.8 -5,-0.3 -2,-0.2 0.950 114.4 42.2 -64.2 -52.2 -6.3 -11.0 1.3 11 42 A K H X S+ 0 0 101 -4,-3.0 4,-2.6 2,-0.2 -2,-0.2 0.909 118.2 45.8 -64.7 -41.3 -6.8 -7.1 1.3 12 43 A M H X S+ 0 0 38 -4,-2.7 4,-2.5 -5,-0.3 5,-0.2 0.936 113.2 49.6 -71.3 -40.3 -8.2 -7.1 -2.3 13 44 A L H X S+ 0 0 0 -4,-2.7 4,-2.4 -5,-0.3 -2,-0.2 0.969 114.1 47.5 -51.0 -56.1 -10.4 -10.1 -1.6 14 45 A R H X S+ 0 0 103 -4,-2.8 4,-2.4 1,-0.2 -2,-0.2 0.880 110.0 51.9 -52.9 -46.0 -11.6 -8.2 1.5 15 46 A A H X S+ 0 0 34 -4,-2.6 4,-2.0 2,-0.2 -1,-0.2 0.912 109.0 48.6 -67.5 -41.9 -12.2 -5.0 -0.5 16 47 A V H X S+ 0 0 12 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.949 114.5 47.6 -58.3 -46.7 -14.3 -6.7 -3.2 17 48 A L H < S+ 0 0 0 -4,-2.4 59,-0.5 -5,-0.2 6,-0.3 0.852 107.3 55.7 -64.3 -37.2 -16.4 -8.3 -0.3 18 49 A Q H < S+ 0 0 59 -4,-2.4 3,-0.3 1,-0.2 -1,-0.2 0.891 113.4 41.0 -65.3 -39.5 -16.7 -5.0 1.6 19 50 A S H < S+ 0 0 95 -4,-2.0 2,-1.4 1,-0.2 -2,-0.2 0.900 111.7 59.4 -67.5 -41.3 -18.3 -3.4 -1.6 20 51 A H >< + 0 0 56 -4,-2.4 3,-2.5 -5,-0.2 -1,-0.2 -0.480 60.2 162.3 -94.7 64.4 -20.4 -6.5 -2.3 21 52 A K T 3 S+ 0 0 140 -2,-1.4 -1,-0.2 -3,-0.3 3,-0.1 0.726 70.2 69.2 -60.1 -22.1 -22.4 -6.8 0.9 22 53 A N T 3 S- 0 0 134 -3,-0.2 -1,-0.3 1,-0.2 -2,-0.1 0.643 110.0-126.0 -63.7 -14.0 -24.9 -9.1 -0.9 23 54 A G < - 0 0 3 -3,-2.5 2,-0.4 -6,-0.3 52,-0.2 -0.028 13.6-112.3 80.3 167.5 -22.1 -11.6 -0.9 24 55 A I E -A 74 0A 2 50,-1.5 50,-2.5 -3,-0.1 2,-0.1 -0.996 22.7-121.1-139.2 126.2 -20.6 -13.5 -3.9 25 56 A V E >> -A 73 0A 49 -2,-0.4 4,-2.7 48,-0.3 3,-0.5 -0.406 43.2 -96.3 -61.3 148.2 -20.9 -17.2 -4.6 26 57 A L H 3> S+ 0 0 34 46,-2.4 4,-1.8 1,-0.2 -1,-0.1 0.749 125.1 42.4 -45.5 -39.2 -17.4 -18.9 -4.8 27 58 A P H 3> S+ 0 0 82 0, 0.0 4,-1.8 0, 0.0 -1,-0.2 0.910 116.2 48.7 -76.1 -36.3 -17.2 -18.8 -8.7 28 59 A R H <> S+ 0 0 139 -3,-0.5 4,-2.5 2,-0.2 5,-0.3 0.855 107.4 58.3 -63.7 -33.1 -18.5 -15.2 -8.8 29 60 A L H X S+ 0 0 3 -4,-2.7 4,-3.0 2,-0.2 5,-0.3 0.972 103.3 50.5 -58.4 -56.0 -15.9 -14.5 -6.1 30 61 A Q H X S+ 0 0 38 -4,-1.8 4,-2.4 1,-0.2 -2,-0.2 0.878 112.9 48.7 -46.7 -47.3 -13.1 -15.7 -8.5 31 62 A G H X S+ 0 0 29 -4,-1.8 4,-1.6 2,-0.2 -2,-0.2 0.972 116.8 37.0 -58.9 -61.3 -14.6 -13.3 -11.2 32 63 A E H X S+ 0 0 69 -4,-2.5 4,-1.6 2,-0.2 -2,-0.2 0.881 115.9 55.2 -67.3 -38.0 -14.9 -10.1 -9.1 33 64 A Y H >X S+ 0 0 0 -4,-3.0 4,-2.7 -5,-0.3 3,-0.7 0.966 108.8 47.7 -51.9 -55.2 -11.7 -10.9 -7.2 34 65 A R H 3X S+ 0 0 108 -4,-2.4 4,-1.6 -5,-0.3 -1,-0.2 0.758 103.7 61.7 -66.7 -26.9 -9.8 -11.1 -10.5 35 66 A S H 3< S+ 0 0 78 -4,-1.6 -1,-0.3 2,-0.1 -2,-0.2 0.912 115.6 33.3 -60.5 -41.4 -11.4 -7.8 -11.7 36 67 A L H << S+ 0 0 86 -4,-1.6 -2,-0.2 -3,-0.7 -3,-0.1 0.950 128.4 33.8 -79.0 -51.3 -9.7 -6.1 -8.7 37 68 A T H < S- 0 0 28 -4,-2.7 -3,-0.2 2,-0.2 -2,-0.1 0.796 89.7-134.3 -77.5 -30.2 -6.4 -8.0 -8.3 38 69 A G S < S+ 0 0 59 -4,-1.6 2,-0.3 -5,-0.3 -4,-0.1 0.696 80.1 87.4 72.5 21.5 -5.7 -8.9 -12.0 39 70 A D S S- 0 0 71 -6,-0.2 -1,-0.3 -30,-0.0 -2,-0.2 -0.954 80.8-112.3-140.2 158.4 -4.9 -12.4 -10.7 40 71 A W - 0 0 131 -2,-0.3 -9,-0.1 1,-0.1 -10,-0.0 -0.561 56.0 -74.4 -85.7 159.9 -7.0 -15.6 -10.0 41 72 A I - 0 0 3 -2,-0.2 2,-1.0 1,-0.1 3,-0.3 -0.322 39.4-138.3 -55.3 130.3 -7.4 -16.8 -6.4 42 73 A P > + 0 0 3 0, 0.0 4,-2.7 0, 0.0 6,-0.3 -0.164 58.4 133.3 -84.9 39.5 -4.1 -18.4 -5.3 43 74 A F H >>S+ 0 0 43 -2,-1.0 5,-2.6 1,-0.2 4,-1.8 0.981 78.5 27.3 -59.2 -62.3 -5.9 -21.4 -3.6 44 75 A K H 45S+ 0 0 162 -3,-0.3 -1,-0.2 3,-0.2 -3,-0.0 0.774 119.7 60.1 -70.9 -27.1 -3.9 -24.3 -4.9 45 76 A Q H 45S+ 0 0 121 1,-0.2 -1,-0.2 -4,-0.2 -2,-0.2 0.879 110.7 39.2 -71.5 -41.5 -0.8 -22.1 -5.3 46 77 A L H <5S- 0 0 69 -4,-2.7 -2,-0.2 -3,-0.2 -1,-0.2 0.745 128.0-103.9 -77.9 -25.6 -0.8 -21.3 -1.5 47 78 A G T <5S+ 0 0 60 -4,-1.8 -3,-0.2 1,-0.4 -4,-0.1 0.485 74.7 136.7 116.4 11.2 -1.7 -25.0 -0.9 48 79 A Y < - 0 0 77 -5,-2.6 -1,-0.4 -6,-0.3 -2,-0.1 -0.682 53.6-135.1 -79.2 139.2 -5.5 -24.9 -0.1 49 80 A P S S+ 0 0 102 0, 0.0 2,-0.3 0, 0.0 -5,-0.1 0.790 77.6 11.6 -69.9 -27.5 -7.3 -27.7 -1.9 50 81 A T S > S- 0 0 57 -7,-0.1 4,-2.2 1,-0.1 5,-0.1 -0.888 77.3-103.3-144.6 166.4 -10.3 -25.6 -3.1 51 82 A L H > S+ 0 0 38 -2,-0.3 4,-2.1 2,-0.2 5,-0.2 0.927 123.8 52.3 -59.2 -44.4 -11.6 -22.1 -3.4 52 83 A E H > S+ 0 0 70 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.940 107.2 50.9 -59.0 -46.5 -13.8 -22.8 -0.4 53 84 A A H > S+ 0 0 18 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.888 108.4 51.9 -63.2 -39.6 -10.8 -24.0 1.7 54 85 A Y H < S+ 0 0 9 -4,-2.2 3,-0.4 2,-0.2 -1,-0.2 0.946 113.4 45.1 -55.4 -47.2 -8.8 -20.8 0.8 55 86 A L H >< S+ 0 0 5 -4,-2.1 3,-1.2 1,-0.2 -2,-0.2 0.847 108.4 56.0 -71.5 -33.6 -11.9 -18.8 2.0 56 87 A R H 3< S+ 0 0 120 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.844 101.1 62.9 -56.4 -35.9 -12.3 -21.0 5.2 57 88 A S T 3< S+ 0 0 61 -4,-1.5 -1,-0.2 -3,-0.4 -2,-0.2 0.249 95.2 58.0 -83.6 11.7 -8.7 -20.0 6.0 58 89 A V X> + 0 0 16 -3,-1.2 4,-2.5 1,-0.1 3,-1.8 -0.233 58.0 141.3-128.8 44.1 -9.3 -16.2 6.3 59 90 A P T 34 + 0 0 99 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.690 67.5 61.4 -69.7 -15.6 -11.9 -16.1 9.2 60 91 A A T 34 S+ 0 0 82 1,-0.1 3,-0.1 -3,-0.1 -3,-0.0 0.544 123.4 18.0 -82.9 -8.4 -10.4 -13.0 10.8 61 92 A V T <4 S+ 0 0 45 -3,-1.8 16,-2.3 1,-0.3 17,-1.9 0.514 127.3 40.3-134.8 -22.2 -11.0 -10.8 7.7 62 93 A V E < -B 76 0A 2 -4,-2.5 2,-0.3 14,-0.3 14,-0.3 -0.811 60.0-157.5-136.3 163.2 -13.7 -12.8 5.6 63 94 A R E -B 75 0A 99 12,-2.7 12,-3.1 -2,-0.3 2,-0.3 -0.954 7.8-162.4-143.9 153.8 -16.9 -14.8 6.4 64 95 A I E -B 74 0A 40 -2,-0.3 2,-0.4 10,-0.2 10,-0.2 -0.982 14.3-156.9-143.6 153.4 -18.7 -17.5 4.4 65 96 A E E -B 73 0A 95 8,-2.7 8,-2.7 -2,-0.3 2,-0.6 -0.943 13.9-156.0-129.3 104.4 -22.2 -19.2 4.3 66 97 A A E -B 72 0A 65 -2,-0.4 6,-0.3 6,-0.3 2,-0.1 -0.762 21.8-140.5 -76.7 120.1 -22.1 -22.7 2.8 67 98 A S > - 0 0 50 4,-2.4 3,-2.0 -2,-0.6 -1,-0.0 -0.460 20.0-113.4 -78.9 157.9 -25.7 -23.2 1.5 68 99 A R T 3 S+ 0 0 232 1,-0.3 -1,-0.1 -2,-0.1 4,-0.0 0.743 116.2 69.1 -59.5 -23.8 -27.6 -26.6 1.8 69 100 A S T 3 S- 0 0 77 2,-0.1 -1,-0.3 1,-0.1 3,-0.1 0.594 119.9-109.0 -69.8 -14.5 -27.4 -26.6 -2.1 70 101 A G S < S+ 0 0 59 -3,-2.0 -2,-0.1 1,-0.4 2,-0.1 0.287 84.7 117.2 95.5 -6.1 -23.6 -27.1 -1.8 71 102 A E - 0 0 92 -5,-0.0 -4,-2.4 -46,-0.0 -1,-0.4 -0.422 54.8-144.8 -74.6 166.1 -22.7 -23.6 -3.0 72 103 A I E - B 0 66A 3 -6,-0.3 -46,-2.4 -2,-0.1 2,-0.4 -0.998 3.1-152.1-135.9 136.4 -20.9 -21.2 -0.7 73 104 A V E -AB 25 65A 32 -8,-2.7 -8,-2.7 -2,-0.4 2,-0.3 -0.869 16.3-142.8-107.5 137.2 -21.5 -17.4 -0.5 74 105 A C E +AB 24 64A 0 -50,-2.5 -50,-1.5 -2,-0.4 2,-0.3 -0.839 21.3 173.7-111.6 145.9 -18.6 -15.2 0.6 75 106 A Y E - B 0 63A 40 -12,-3.1 -12,-2.7 -2,-0.3 2,-0.1 -0.880 28.2-106.5-143.8 164.6 -18.7 -12.1 2.8 76 107 A A E + B 0 62A 15 -59,-0.5 -14,-0.3 -2,-0.3 -61,-0.0 -0.472 24.6 173.4 -88.3 168.5 -16.3 -9.6 4.5 77 108 A V 0 0 78 -16,-2.3 -15,-0.2 -2,-0.1 -1,-0.1 0.443 360.0 360.0-143.0 -27.4 -15.6 -9.2 8.2 78 109 A A 0 0 52 -17,-1.9 -16,-0.1 -64,-0.0 -17,-0.1 0.052 360.0 360.0-146.5 360.0 -12.7 -6.6 8.4