==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-AUG-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-AUG-11 2LHJ . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN HOMOLOG NHP1; . SOURCE 2 ORGANISM_SCIENTIFIC: BABESIA BOVIS; . AUTHOR R.BARNWAL,G.VARANI,SEATTLE STRUCTURAL GENOMICS CENTER FOR IN . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7933.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 52.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 23 23.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 23.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 216 0, 0.0 10,-0.1 0, 0.0 11,-0.0 0.000 360.0 360.0 360.0 127.4 2.1 -0.0 -1.2 2 2 A A + 0 0 42 1,-0.1 9,-0.1 2,-0.1 10,-0.1 0.000 360.0 86.3 -69.3-178.8 2.6 -3.1 -3.3 3 3 A G + 0 0 61 7,-0.3 -1,-0.1 4,-0.0 8,-0.0 0.732 39.7 144.9 94.6 26.5 5.9 -4.7 -4.2 4 4 A A - 0 0 51 1,-0.1 -2,-0.1 6,-0.0 5,-0.0 0.764 48.5-145.8 -66.3 -25.1 6.3 -6.8 -1.1 5 5 A S S S+ 0 0 110 2,-0.1 -1,-0.1 1,-0.1 3,-0.1 0.780 74.9 99.9 63.0 26.6 8.0 -9.4 -3.2 6 6 A D S S+ 0 0 147 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.687 78.7 36.9-110.0 -31.8 6.4 -12.1 -0.9 7 7 A R S S- 0 0 189 1,-0.0 3,-0.3 0, 0.0 -2,-0.1 -0.558 86.2-106.4-114.3 179.9 3.5 -13.1 -3.1 8 8 A T S S+ 0 0 163 1,-0.2 -1,-0.0 -2,-0.2 -3,-0.0 0.748 111.8 2.9 -78.7 -25.0 2.9 -13.7 -6.8 9 9 A G S S- 0 0 57 2,-0.0 2,-0.2 -7,-0.0 -1,-0.2 -0.351 73.3-162.8-163.0 73.1 0.8 -10.5 -7.0 10 10 A V - 0 0 46 -3,-0.3 -7,-0.3 1,-0.1 2,-0.2 -0.428 18.3-144.4 -63.4 123.4 0.5 -8.4 -3.9 11 11 A R - 0 0 162 -2,-0.2 -1,-0.1 -9,-0.1 -2,-0.0 -0.509 7.2-133.4 -88.6 158.6 -2.4 -6.0 -4.3 12 12 A R > - 0 0 109 -2,-0.2 3,-1.4 1,-0.1 6,-0.2 -0.807 16.5-124.9-113.2 154.0 -2.6 -2.4 -2.9 13 13 A P T 3 S+ 0 0 100 0, 0.0 34,-0.1 0, 0.0 -1,-0.1 0.596 106.0 72.8 -69.7 -10.6 -5.3 -0.6 -0.9 14 14 A R T 3 + 0 0 195 32,-0.0 -3,-0.0 3,-0.0 31,-0.0 0.716 68.6 116.4 -76.5 -21.4 -5.2 2.1 -3.6 15 15 A K X - 0 0 46 -3,-1.4 3,-0.7 1,-0.2 32,-0.0 -0.244 63.4-145.0 -51.5 126.4 -6.9 -0.2 -6.0 16 16 A A T 3 S+ 0 0 73 1,-0.2 -1,-0.2 4,-0.0 -2,-0.0 0.894 100.0 58.4 -61.7 -41.4 -10.3 1.3 -6.9 17 17 A K T 3 S+ 0 0 188 2,-0.1 2,-0.5 0, 0.0 -1,-0.2 0.769 91.5 87.2 -60.1 -25.4 -11.9 -2.2 -7.2 18 18 A K S < S- 0 0 96 -3,-0.7 29,-0.0 -6,-0.2 -6,-0.0 -0.675 87.9-119.9 -81.6 121.1 -10.8 -2.7 -3.5 19 19 A D - 0 0 106 -2,-0.5 -1,-0.1 1,-0.1 -2,-0.1 -0.110 14.9-123.4 -55.8 155.1 -13.4 -1.4 -1.1 20 20 A P - 0 0 48 0, 0.0 -1,-0.1 0, 0.0 27,-0.1 0.858 26.3-164.1 -69.8 -37.1 -12.4 1.4 1.3 21 21 A N + 0 0 143 1,-0.2 -2,-0.0 0, 0.0 -3,-0.0 0.867 38.9 142.6 51.8 39.4 -13.3 -0.6 4.4 22 22 A A - 0 0 20 1,-0.1 2,-0.2 23,-0.0 -1,-0.2 -0.722 58.7 -89.4-109.8 160.4 -13.2 2.6 6.4 23 23 A P - 0 0 83 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.464 31.3-176.4 -69.8 132.8 -15.4 3.9 9.3 24 24 A K + 0 0 126 -2,-0.2 2,-0.1 2,-0.0 -2,-0.0 -0.007 36.9 133.3-117.8 26.6 -18.5 5.9 8.2 25 25 A R - 0 0 102 1,-0.1 41,-0.2 42,-0.0 2,-0.1 -0.357 56.0-110.6 -76.5 158.5 -19.7 6.8 11.7 26 26 A A - 0 0 8 39,-2.1 2,-0.2 1,-0.1 -1,-0.1 -0.422 43.7 -78.7 -86.5 164.0 -20.7 10.3 12.7 27 27 A L - 0 0 2 56,-0.1 5,-0.2 -2,-0.1 -1,-0.1 -0.414 55.8-107.4 -64.4 130.3 -18.9 12.7 15.0 28 28 A S - 0 0 23 3,-0.2 -1,-0.1 -2,-0.2 4,-0.1 0.018 22.4-121.6 -51.7 164.4 -19.4 11.9 18.7 29 29 A S S S+ 0 0 43 2,-0.1 3,-0.2 3,-0.1 4,-0.1 0.987 105.1 11.7 -74.5 -65.6 -21.6 14.2 20.8 30 30 A Y S > S+ 0 0 200 1,-0.2 3,-0.9 2,-0.1 4,-0.1 0.819 129.6 56.1 -82.5 -33.9 -19.3 15.2 23.5 31 31 A M T >> S+ 0 0 99 1,-0.2 4,-3.3 2,-0.1 3,-1.3 0.526 74.9 105.6 -75.3 -4.9 -16.2 13.9 21.8 32 32 A F H 3> + 0 0 34 1,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.811 68.4 68.6 -43.6 -34.2 -17.1 16.0 18.8 33 33 A F H <4 S+ 0 0 159 -3,-0.9 -1,-0.3 2,-0.2 -2,-0.1 0.942 116.9 19.8 -52.2 -54.0 -14.2 18.2 20.0 34 34 A A H X4 S+ 0 0 38 -3,-1.3 3,-2.4 1,-0.2 -2,-0.2 0.877 120.9 60.5 -84.3 -42.7 -11.6 15.6 19.1 35 35 A K H >< S+ 0 0 86 -4,-3.3 3,-2.8 1,-0.3 4,-0.2 0.732 86.2 80.6 -57.3 -21.4 -13.8 13.6 16.6 36 36 A E G >< S+ 0 0 80 -4,-1.8 3,-0.9 -5,-0.4 -1,-0.3 0.755 82.5 63.1 -57.4 -24.0 -14.0 16.9 14.7 37 37 A K G X S+ 0 0 121 -3,-2.4 3,-3.1 1,-0.2 -1,-0.3 0.551 72.8 97.0 -78.1 -7.4 -10.6 15.9 13.3 38 38 A R G X + 0 0 50 -3,-2.8 3,-2.5 1,-0.3 4,-0.3 0.801 66.2 75.5 -50.8 -30.3 -12.2 12.9 11.7 39 39 A V G X S+ 0 0 20 -3,-0.9 3,-1.5 1,-0.3 -1,-0.3 0.730 80.0 72.4 -55.4 -21.4 -12.3 14.9 8.5 40 40 A E G X> S+ 0 0 149 -3,-3.1 3,-2.3 1,-0.3 4,-0.7 0.786 77.0 76.5 -65.2 -27.3 -8.6 14.3 8.3 41 41 A I H <> S+ 0 0 37 -3,-2.5 4,-2.1 -4,-0.3 -1,-0.3 0.735 71.8 84.9 -55.7 -21.9 -9.4 10.7 7.3 42 42 A I H <4 S+ 0 0 15 -3,-1.5 -1,-0.3 -4,-0.3 -2,-0.2 0.796 93.5 44.6 -51.1 -29.6 -10.3 12.1 3.9 43 43 A A H <4 S+ 0 0 71 -3,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.896 108.4 53.5 -82.0 -44.7 -6.6 11.8 3.2 44 44 A E H < S+ 0 0 161 -4,-0.7 -2,-0.2 1,-0.3 -1,-0.2 0.755 115.1 45.7 -61.8 -24.0 -6.1 8.3 4.6 45 45 A N >< + 0 0 26 -4,-2.1 3,-0.6 1,-0.1 4,-0.4 -0.665 61.7 161.2-123.0 75.7 -8.9 7.2 2.4 46 46 A P T 3 + 0 0 81 0, 0.0 4,-0.4 0, 0.0 -1,-0.1 0.567 63.9 82.2 -69.7 -8.2 -8.3 8.7 -1.1 47 47 A E T 3 S+ 0 0 58 1,-0.2 3,-0.4 2,-0.1 -5,-0.0 0.958 109.3 18.4 -61.7 -53.2 -10.7 6.1 -2.5 48 48 A I S X S+ 0 0 21 -3,-0.6 3,-2.2 1,-0.2 -1,-0.2 0.289 95.7 106.7-101.0 7.8 -13.9 8.1 -1.6 49 49 A A T 3 S+ 0 0 7 -4,-0.4 -1,-0.2 1,-0.3 -2,-0.1 0.741 83.4 49.0 -57.4 -22.7 -11.9 11.3 -1.2 50 50 A K T 3 S+ 0 0 142 -4,-0.4 2,-1.5 -3,-0.4 -1,-0.3 -0.074 75.1 143.9-107.9 31.5 -13.6 12.3 -4.5 51 51 A D < + 0 0 62 -3,-2.2 4,-0.3 1,-0.2 44,-0.1 -0.571 12.3 164.0 -75.5 91.4 -17.1 11.4 -3.5 52 52 A V S S+ 0 0 103 -2,-1.5 3,-0.4 1,-0.2 4,-0.3 0.729 75.5 54.4 -80.0 -23.4 -19.1 14.1 -5.2 53 53 A A S >> S+ 0 0 73 1,-0.2 4,-2.1 -3,-0.2 3,-1.1 0.723 88.5 77.8 -81.4 -23.2 -22.3 12.1 -4.7 54 54 A A H 3> S+ 0 0 14 1,-0.3 4,-2.0 2,-0.2 -1,-0.2 0.817 87.0 61.7 -55.0 -31.7 -21.8 11.9 -1.0 55 55 A I H 34 S+ 0 0 63 -3,-0.4 4,-0.3 -4,-0.3 -1,-0.3 0.865 109.8 39.0 -63.9 -37.0 -23.0 15.5 -0.7 56 56 A G H <4 S+ 0 0 58 -3,-1.1 3,-0.5 -4,-0.3 4,-0.4 0.772 117.7 48.5 -83.8 -27.8 -26.3 14.5 -2.1 57 57 A K H X S+ 0 0 141 -4,-2.1 4,-2.0 1,-0.2 3,-0.3 0.704 89.2 83.0 -83.4 -21.8 -26.5 11.2 -0.3 58 58 A M H X S+ 0 0 20 -4,-2.0 4,-1.4 -5,-0.3 -1,-0.2 0.803 82.5 66.6 -51.1 -30.5 -25.6 12.9 3.0 59 59 A I H >4 S+ 0 0 111 -3,-0.5 3,-0.9 -4,-0.3 4,-0.4 0.977 108.7 32.3 -56.0 -62.3 -29.2 13.8 3.3 60 60 A G H >4 S+ 0 0 40 -4,-0.4 3,-0.5 -3,-0.3 4,-0.5 0.727 117.9 58.1 -68.9 -21.2 -30.5 10.3 3.7 61 61 A A H 3< S+ 0 0 28 -4,-2.0 4,-0.5 1,-0.2 -1,-0.2 0.670 81.7 85.5 -81.3 -18.2 -27.3 9.3 5.5 62 62 A A T << S+ 0 0 11 -4,-1.4 3,-0.4 -3,-0.9 4,-0.3 0.837 96.1 42.1 -50.8 -35.4 -28.0 12.0 8.1 63 63 A W S < S+ 0 0 160 -3,-0.5 3,-0.5 -4,-0.4 -1,-0.3 0.787 114.7 49.6 -82.5 -30.1 -30.1 9.4 10.0 64 64 A N S S+ 0 0 88 -4,-0.5 -2,-0.2 1,-0.2 -1,-0.2 0.241 86.5 92.4 -91.9 12.5 -27.6 6.6 9.4 65 65 A A S S+ 0 0 11 -4,-0.5 -39,-2.1 -3,-0.4 -1,-0.2 0.859 81.9 55.9 -72.9 -36.8 -24.8 8.8 10.6 66 66 A L S S- 0 0 12 -3,-0.5 5,-0.1 -4,-0.3 -39,-0.0 -0.370 107.3 -69.6 -90.9 173.1 -25.1 7.5 14.2 67 67 A S - 0 0 40 1,-0.1 4,-0.2 -2,-0.1 10,-0.2 -0.280 35.7-136.3 -62.3 146.1 -25.0 3.9 15.5 68 68 A D S >> S+ 0 0 92 2,-0.2 3,-1.6 1,-0.2 4,-0.8 0.944 104.8 51.6 -68.9 -49.8 -27.9 1.7 14.6 69 69 A E T 34 S+ 0 0 164 1,-0.3 3,-0.3 2,-0.2 -1,-0.2 0.808 116.5 42.5 -57.3 -30.2 -28.3 0.2 18.0 70 70 A E T 34 S+ 0 0 59 1,-0.2 6,-1.0 2,-0.1 7,-0.6 0.445 102.7 69.3 -94.8 -2.8 -28.4 3.7 19.4 71 71 A K T <4 S+ 0 0 65 -3,-1.6 -2,-0.2 -4,-0.2 -1,-0.2 0.587 83.9 72.3 -89.1 -12.6 -30.6 4.9 16.6 72 72 A K S < S+ 0 0 159 -4,-0.8 -1,-0.1 -3,-0.3 -2,-0.1 0.954 100.3 41.9 -66.0 -51.7 -33.6 2.9 18.0 73 73 A P S S- 0 0 59 0, 0.0 -1,-0.2 0, 0.0 -2,-0.2 0.672 98.8-139.8 -69.8 -17.1 -34.2 5.1 21.0 74 74 A Y S S+ 0 0 138 -4,-0.3 4,-0.4 1,-0.1 -3,-0.1 0.662 73.0 114.7 64.4 14.9 -33.6 8.1 18.7 75 75 A E S > S+ 0 0 134 -5,-0.4 4,-1.3 3,-0.1 -4,-0.1 0.867 80.4 32.5 -81.7 -40.0 -31.7 9.7 21.6 76 76 A R H > S+ 0 0 103 -6,-1.0 4,-1.5 2,-0.2 -5,-0.1 0.947 117.2 51.9 -81.1 -55.2 -28.3 9.7 19.9 77 77 A M H 4 S+ 0 0 26 -7,-0.6 -1,-0.1 1,-0.2 -2,-0.1 0.788 112.2 51.9 -52.3 -28.3 -29.4 10.3 16.3 78 78 A S H >4 S+ 0 0 46 -4,-0.4 3,-2.3 1,-0.2 -1,-0.2 0.938 104.2 52.1 -74.9 -49.5 -31.4 13.2 17.7 79 79 A D H >X S+ 0 0 84 -4,-1.3 3,-1.8 1,-0.3 4,-0.7 0.716 91.7 79.8 -59.8 -19.9 -28.5 14.9 19.6 80 80 A E H 3X + 0 0 14 -4,-1.5 4,-3.0 1,-0.3 -1,-0.3 0.675 65.8 90.7 -62.1 -15.9 -26.6 14.7 16.3 81 81 A D H <4 S+ 0 0 121 -3,-2.3 -1,-0.3 2,-0.2 4,-0.2 0.801 94.8 37.9 -50.0 -30.7 -28.6 17.8 15.4 82 82 A R H X4 S+ 0 0 144 -3,-1.8 3,-2.5 2,-0.1 4,-0.4 0.948 116.8 45.0 -85.4 -63.0 -25.7 19.7 16.9 83 83 A V H >X S+ 0 0 3 -4,-0.7 4,-3.1 1,-0.3 3,-1.1 0.757 94.8 83.8 -53.4 -24.5 -22.6 17.7 15.8 84 84 A R H 3X S+ 0 0 107 -4,-3.0 4,-2.2 1,-0.3 -1,-0.3 0.813 83.3 60.1 -49.3 -32.3 -24.3 17.6 12.4 85 85 A Y H <4 S+ 0 0 184 -3,-2.5 4,-0.4 1,-0.2 -1,-0.3 0.900 112.9 34.9 -64.2 -42.0 -22.7 21.0 11.8 86 86 A E H X> S+ 0 0 40 -3,-1.1 4,-0.6 -4,-0.4 3,-0.5 0.805 113.4 60.2 -81.7 -32.1 -19.2 19.6 12.3 87 87 A R H >X S+ 0 0 17 -4,-3.1 3,-1.4 1,-0.2 4,-0.7 0.920 98.0 57.5 -61.5 -45.6 -20.0 16.2 10.7 88 88 A E H 3X S+ 0 0 77 -4,-2.2 4,-1.5 1,-0.3 -1,-0.2 0.774 90.9 75.8 -56.8 -26.1 -20.9 17.8 7.4 89 89 A K H <> S+ 0 0 90 -3,-0.5 4,-2.6 -4,-0.4 -1,-0.3 0.894 89.1 57.1 -52.8 -43.7 -17.4 19.3 7.4 90 90 A A H