==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-JUN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEAR PROTEIN 12-AUG-11 2LHN . COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; . AUTHOR C.BROCKMANN,D.NEUHAUS,M.STEWART . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6468.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 24 30.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 7.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 404 A G 0 0 117 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-167.9 -12.7 -19.1 -8.2 2 405 A P - 0 0 139 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.162 360.0-166.7 -61.2 153.2 -9.0 -20.2 -8.7 3 406 A L - 0 0 85 1,-0.1 4,-0.1 40,-0.0 41,-0.0 -0.960 13.8-127.1-138.1 153.8 -6.0 -18.0 -7.7 4 407 A G - 0 0 39 -2,-0.3 3,-0.2 2,-0.1 -1,-0.1 0.356 57.6 -58.2 -78.3-149.7 -2.2 -18.1 -8.5 5 408 A S S S+ 0 0 79 1,-0.2 2,-0.3 2,-0.1 3,-0.2 0.445 112.0 86.2 -81.7 -0.1 0.8 -18.0 -6.0 6 409 A E + 0 0 64 1,-0.2 -1,-0.2 3,-0.0 18,-0.1 -0.142 46.0 131.7 -95.8 37.2 -0.2 -14.6 -4.3 7 410 A K + 0 0 131 -2,-0.3 2,-0.5 -3,-0.2 -1,-0.2 0.460 34.9 107.9 -78.9 -1.6 -2.6 -16.1 -1.7 8 411 A S - 0 0 35 16,-2.1 18,-0.4 -3,-0.2 -3,-0.0 -0.675 60.8-152.0 -78.0 125.5 -1.1 -14.2 1.3 9 412 A L S S+ 0 0 78 -2,-0.5 -1,-0.1 16,-0.1 16,-0.1 0.657 72.6 86.3 -79.1 -15.3 -3.6 -11.5 2.3 10 413 A E S S- 0 0 139 14,-0.1 16,-2.9 1,-0.1 2,-0.3 -0.295 82.2-111.4 -68.5 165.3 -0.8 -9.2 3.7 11 414 A Q B -a 26 0A 10 39,-0.3 16,-0.2 14,-0.2 2,-0.1 -0.805 14.9-115.2-107.1 148.9 1.1 -6.9 1.3 12 415 A C - 0 0 17 14,-2.7 3,-0.3 -2,-0.3 16,-0.2 -0.335 24.6-129.8 -61.7 153.4 4.5 -6.6 -0.2 13 416 A K S S+ 0 0 92 1,-0.2 54,-0.1 -2,-0.1 -1,-0.1 0.809 97.1 56.8 -79.3 -33.1 6.7 -3.6 0.8 14 417 A F S > S- 0 0 128 1,-0.2 3,-2.4 2,-0.1 -1,-0.2 0.467 74.6-174.8 -92.3 -2.5 7.8 -2.4 -2.7 15 418 A G G > S+ 0 0 1 -3,-0.3 3,-1.2 1,-0.3 -1,-0.2 -0.219 76.0 8.0 53.9-119.0 4.3 -1.8 -4.3 16 419 A T G 3 S+ 0 0 93 1,-0.2 -1,-0.3 14,-0.1 13,-0.1 0.715 131.9 58.5 -62.1 -24.0 4.8 -0.8 -8.0 17 420 A H G < + 0 0 145 -3,-2.4 -1,-0.2 -4,-0.1 -2,-0.2 0.462 70.0 122.5 -92.5 -4.9 8.6 -1.6 -7.7 18 421 A C < - 0 0 14 -3,-1.2 5,-0.0 1,-0.1 9,-0.0 -0.437 49.1-157.5 -63.2 128.3 8.3 -5.3 -6.6 19 422 A T + 0 0 139 -2,-0.2 2,-0.4 2,-0.0 -1,-0.1 0.522 60.8 86.4 -93.7 -8.9 10.3 -7.3 -9.3 20 423 A N > - 0 0 87 1,-0.1 3,-0.6 2,-0.0 -2,-0.0 -0.842 55.3-160.7-104.5 128.4 8.8 -10.8 -9.0 21 424 A K T 3 S+ 0 0 198 -2,-0.4 -1,-0.1 1,-0.2 -3,-0.0 0.547 94.2 43.5 -84.9 -10.2 5.6 -11.8 -11.0 22 425 A R T 3 S+ 0 0 196 -17,-0.1 -1,-0.2 -18,-0.1 -2,-0.0 0.264 82.5 152.4-110.4 3.4 4.7 -14.9 -8.7 23 426 A C < - 0 0 24 -3,-0.6 -11,-0.1 1,-0.1 4,-0.1 -0.040 49.2-125.5 -59.1 140.2 5.4 -13.1 -5.4 24 427 A K S S+ 0 0 120 -18,-0.1 -16,-2.1 -17,-0.1 2,-0.1 0.583 79.2 60.7 -71.1 -17.4 3.4 -14.3 -2.4 25 428 A Y S S- 0 0 69 -18,-0.2 -14,-0.2 1,-0.1 2,-0.2 -0.462 91.3 -83.1-108.2 169.8 1.8 -11.1 -1.1 26 429 A R B -a 11 0A 8 -16,-2.9 -14,-2.7 -18,-0.4 2,-0.4 -0.527 45.2-152.9 -73.1 143.9 -0.7 -8.5 -2.3 27 430 A H - 0 0 24 18,-0.5 2,-1.2 -16,-0.2 3,-0.2 -0.981 17.4-133.2-125.4 130.0 0.9 -5.7 -4.4 28 431 A A + 0 0 0 -2,-0.4 19,-0.2 -16,-0.2 20,-0.1 -0.683 45.1 149.5 -77.9 94.5 -0.1 -2.0 -5.0 29 432 A R + 0 0 101 17,-1.3 2,-0.2 -2,-1.2 -1,-0.2 0.583 56.7 61.5-100.4 -17.9 0.3 -1.8 -8.8 30 433 A S S S- 0 0 36 16,-3.0 18,-0.1 2,-0.2 -14,-0.1 -0.669 83.0-122.3-107.4 161.5 -2.5 0.8 -9.4 31 434 A H S S+ 0 0 125 -2,-0.2 2,-0.4 16,-0.1 16,-0.1 0.427 82.1 102.4 -81.6 -3.5 -3.0 4.4 -8.1 32 435 A I - 0 0 72 14,-0.1 16,-2.7 33,-0.1 2,-0.4 -0.731 64.4-146.0 -84.9 127.8 -6.3 3.5 -6.4 33 436 A M B -b 48 0B 76 -2,-0.4 16,-0.2 14,-0.3 32,-0.1 -0.809 34.4-101.7 -91.7 138.5 -6.2 3.1 -2.6 34 437 A C - 0 0 21 14,-2.6 3,-0.3 -2,-0.4 4,-0.1 -0.247 11.4-139.2 -73.5 145.2 -8.7 0.4 -1.4 35 438 A R S S+ 0 0 225 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.792 108.9 40.9 -67.1 -30.8 -12.2 1.1 0.1 36 439 A E S > S- 0 0 84 1,-0.2 3,-1.9 2,-0.0 4,-0.3 0.501 93.4-169.7 -94.5 -8.5 -11.7 -1.8 2.7 37 440 A G G > - 0 0 18 -3,-0.3 3,-0.8 1,-0.3 -1,-0.2 -0.284 67.6 -10.7 58.6-128.9 -8.0 -0.8 3.3 38 441 A A G 3 S+ 0 0 64 1,-0.2 -1,-0.3 11,-0.1 11,-0.1 0.539 134.8 63.7 -78.7 -7.8 -6.1 -3.5 5.4 39 442 A N G < S+ 0 0 132 -3,-1.9 -1,-0.2 2,-0.0 -2,-0.2 0.552 77.0 122.4 -89.0 -10.3 -9.5 -5.3 6.2 40 443 A C < - 0 0 7 -3,-0.8 -6,-0.0 -4,-0.3 5,-0.0 -0.277 49.2-162.2 -52.3 130.8 -9.9 -6.0 2.4 41 444 A T + 0 0 121 -2,-0.0 2,-0.7 2,-0.0 -1,-0.1 0.345 51.9 118.3 -95.6 2.8 -10.3 -9.8 1.6 42 445 A R > + 0 0 92 1,-0.2 3,-0.9 2,-0.1 -2,-0.1 -0.639 36.5 179.3 -83.3 109.3 -9.5 -9.4 -2.2 43 446 A I T 3 S+ 0 0 25 -2,-0.7 -1,-0.2 1,-0.2 -35,-0.1 0.816 85.3 63.8 -67.2 -28.8 -6.3 -11.2 -3.4 44 447 A D T 3 S+ 0 0 102 -18,-0.1 2,-0.3 2,-0.0 -1,-0.2 0.444 76.5 120.9 -76.1 -2.9 -7.2 -9.8 -6.9 45 448 A C < - 0 0 8 -3,-0.9 -18,-0.5 1,-0.1 4,-0.1 -0.515 38.8-177.6 -74.8 129.0 -6.7 -6.1 -5.7 46 449 A L + 0 0 86 -2,-0.3 -16,-3.0 -18,-0.1 -17,-1.3 0.275 57.1 108.9 -91.4 1.8 -4.1 -4.0 -7.6 47 450 A F S S- 0 0 59 -19,-0.2 2,-0.5 -18,-0.2 -14,-0.3 -0.279 83.5 -83.5 -83.5 163.8 -5.0 -1.2 -5.2 48 451 A G B +b 33 0B 0 -16,-2.7 -14,-2.6 -20,-0.1 -11,-0.2 -0.575 48.7 173.8 -62.5 118.2 -3.0 0.4 -2.3 49 452 A H - 0 0 1 -2,-0.5 -21,-0.1 -16,-0.2 -11,-0.1 -0.990 32.8-106.1-122.8 137.7 -3.5 -1.6 0.9 50 453 A P - 0 0 37 0, 0.0 2,-0.3 0, 0.0 -39,-0.3 -0.080 24.3-158.9 -66.6 163.4 -1.5 -0.6 4.1 51 454 A I - 0 0 24 16,-1.2 2,-1.8 2,-0.2 18,-0.4 -0.961 34.3-106.5-133.8 146.0 1.5 -2.3 5.9 52 455 A N S S+ 0 0 156 -2,-0.3 2,-0.3 16,-0.1 16,-0.1 -0.567 81.1 109.2 -75.4 79.9 2.8 -1.8 9.5 53 456 A E S S- 0 0 66 -2,-1.8 16,-2.8 14,-0.1 2,-0.6 -0.981 71.4-109.7-150.7 153.5 5.8 0.4 8.6 54 457 A D B -c 69 0C 135 -2,-0.3 16,-0.2 14,-0.2 -2,-0.1 -0.815 39.7-119.2 -91.9 121.6 6.9 4.1 9.0 55 458 A C - 0 0 23 14,-2.4 -1,-0.0 -2,-0.6 6,-0.0 -0.228 10.5-128.8 -58.9 144.7 7.0 6.0 5.7 56 459 A R S S+ 0 0 214 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.593 107.7 31.4 -67.3 -15.4 10.3 7.6 4.5 57 460 A F S > S+ 0 0 133 1,-0.1 3,-2.4 2,-0.0 2,-0.3 0.622 77.5 175.9-121.7 -26.0 8.6 11.0 4.0 58 461 A G T 3 S+ 0 0 13 1,-0.3 3,-0.5 11,-0.2 -1,-0.1 -0.344 80.4 7.7 59.9-111.6 5.8 11.2 6.6 59 462 A V T 3 S+ 0 0 77 -2,-0.3 16,-0.4 1,-0.2 -1,-0.3 0.671 130.8 59.7 -72.8 -19.8 4.2 14.7 6.4 60 463 A N S < S+ 0 0 122 -3,-2.4 -1,-0.2 14,-0.1 -2,-0.2 0.680 83.7 103.5 -82.6 -20.8 6.2 15.4 3.2 61 464 A C + 0 0 13 -3,-0.5 14,-0.1 1,-0.1 -6,-0.0 -0.392 39.8 173.9 -65.6 134.6 4.6 12.4 1.4 62 465 A K + 0 0 95 -2,-0.1 2,-0.6 14,-0.1 -1,-0.1 0.183 37.5 123.3-127.2 11.6 1.9 13.2 -1.2 63 466 A N > - 0 0 56 1,-0.1 3,-1.0 13,-0.1 -2,-0.1 -0.690 47.6-159.2 -78.6 114.7 1.3 9.7 -2.6 64 467 A I T 3 S+ 0 0 80 -2,-0.6 -1,-0.1 1,-0.2 -33,-0.0 0.748 89.4 38.6 -65.9 -28.1 -2.4 8.9 -2.1 65 468 A Y T 3 S+ 0 0 70 -32,-0.1 -1,-0.2 -33,-0.0 -16,-0.2 -0.133 85.0 158.7-119.1 28.1 -2.0 5.1 -2.3 66 469 A C < - 0 0 14 -3,-1.0 -11,-0.0 -18,-0.1 -51,-0.0 -0.194 42.5-134.0 -72.0 150.3 1.3 4.7 -0.4 67 470 A L S S+ 0 0 21 -54,-0.1 -16,-1.2 -17,-0.1 2,-0.2 0.751 79.3 60.7 -78.5 -27.5 2.4 1.4 1.2 68 471 A F S S- 0 0 31 -18,-0.2 -14,-0.2 1,-0.1 -16,-0.1 -0.550 87.2 -93.6-109.0 162.6 3.6 2.7 4.6 69 472 A R B -c 54 0C 118 -16,-2.8 -14,-2.4 -18,-0.4 -11,-0.2 -0.429 33.6-149.8 -76.2 151.8 1.9 4.5 7.6 70 473 A H - 0 0 51 -16,-0.2 3,-0.1 -2,-0.1 4,-0.1 -0.883 21.1-102.6-123.4 150.0 2.0 8.4 8.0 71 474 A P > - 0 0 54 0, 0.0 3,-1.0 0, 0.0 -1,-0.1 -0.227 46.2 -85.6 -70.2 160.4 1.9 10.6 11.2 72 475 A P T 3 S+ 0 0 132 0, 0.0 -13,-0.1 0, 0.0 0, 0.0 -0.319 112.6 33.0 -62.4 146.9 -1.1 12.5 12.6 73 476 A G T 3 S+ 0 0 87 1,-0.3 2,-0.3 -3,-0.1 -14,-0.0 0.577 83.6 142.2 77.5 12.7 -1.8 16.0 11.0 74 477 A R < - 0 0 102 -3,-1.0 2,-0.3 -4,-0.1 -1,-0.3 -0.653 39.5-144.1 -80.2 142.3 -0.4 15.0 7.6 75 478 A V - 0 0 102 -16,-0.4 -1,-0.0 -2,-0.3 0, 0.0 -0.827 14.7-172.4-111.4 145.2 -2.2 16.4 4.5 76 479 A L - 0 0 40 -2,-0.3 -14,-0.1 -14,-0.0 2,-0.1 -0.976 29.4-107.5-131.1 144.3 -2.8 14.8 1.1 77 480 A P - 0 0 78 0, 0.0 2,-0.3 0, 0.0 -13,-0.0 -0.343 34.5-168.9 -73.2 154.7 -4.3 16.5 -2.1 78 481 A E - 0 0 149 -2,-0.1 2,-0.4 2,-0.1 0, 0.0 -0.976 23.9-158.5-139.1 153.7 -7.9 15.9 -3.4 79 482 A K 0 0 215 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.927 360.0 360.0-131.4 103.2 -10.0 16.6 -6.5 80 483 A K 0 0 234 -2,-0.4 -2,-0.1 0, 0.0 0, 0.0 -0.999 360.0 360.0-148.9 360.0 -13.7 16.3 -5.3