==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/RNA 25-AUG-11 2LI8 . COMPND 2 MOLECULE: PROTEIN LIN-28 HOMOLOG A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.H.-T.ALLAIN,F.E.LOUGHLIN . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5749.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 27.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 5 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 124 A P 0 0 114 0, 0.0 2,-0.3 0, 0.0 40,-0.1 0.000 360.0 360.0 360.0 131.7 9.1 -10.0 2.0 2 125 A K + 0 0 187 2,-0.0 2,-0.3 38,-0.0 0, 0.0 -0.976 360.0 124.9-153.9 162.4 11.7 -8.4 -0.3 3 126 A G - 0 0 69 -2,-0.3 2,-0.3 38,-0.0 37,-0.1 -0.927 44.3 -89.4 176.9-157.5 12.3 -5.2 -2.3 4 127 A K - 0 0 190 -2,-0.3 2,-0.1 1,-0.0 -2,-0.0 -0.865 53.1 -65.5-139.4 171.7 14.8 -2.4 -2.9 5 128 A S + 0 0 120 -2,-0.3 2,-0.3 0, 0.0 -1,-0.0 -0.344 61.1 149.9 -64.7 138.3 15.3 1.1 -1.5 6 129 A M - 0 0 102 -2,-0.1 2,-0.3 -3,-0.0 8,-0.1 -0.958 22.8-158.7-158.4 170.0 12.6 3.7 -2.2 7 130 A Q - 0 0 126 -2,-0.3 2,-0.9 0, 0.0 0, 0.0 -0.882 47.2 -65.7-144.8 171.1 11.1 6.9 -0.6 8 131 A K S S+ 0 0 142 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.561 80.3 140.4 -64.6 103.9 8.0 9.0 -0.6 9 132 A R - 0 0 133 -2,-0.9 2,-0.3 2,-0.1 4,-0.1 -0.680 40.3-132.7-136.9-174.7 8.3 10.3 -4.2 10 133 A R + 0 0 206 2,-0.2 4,-0.0 -2,-0.2 -2,-0.0 -0.909 60.0 4.7-143.0 167.3 6.1 11.0 -7.3 11 134 A S S > S+ 0 0 83 -2,-0.3 3,-1.1 2,-0.1 -2,-0.1 -0.176 113.1 20.8 55.8-147.9 6.1 10.4 -11.0 12 135 A K T 3 S+ 0 0 189 1,-0.2 -2,-0.2 -3,-0.0 3,-0.1 -0.115 114.2 48.6 -49.2 143.1 8.9 8.1 -12.4 13 136 A G T 3 S+ 0 0 84 1,-0.4 -1,-0.2 -4,-0.1 2,-0.2 0.215 110.8 55.0 104.1 -10.2 10.6 5.8 -9.9 14 137 A D S < S- 0 0 38 -3,-1.1 -1,-0.4 8,-0.1 2,-0.2 -0.792 73.4-129.6-140.2-177.6 7.2 4.6 -8.5 15 138 A R - 0 0 141 -2,-0.2 7,-0.2 1,-0.1 11,-0.2 -0.681 49.6 -42.6-130.8 177.1 4.0 3.0 -9.8 16 139 A C > - 0 0 5 5,-3.5 4,-0.7 8,-0.3 9,-0.1 -0.254 49.4-141.7 -44.7 116.2 0.2 3.3 -9.8 17 140 A Y T 4 S+ 0 0 99 1,-0.2 -1,-0.2 2,-0.1 8,-0.1 0.340 96.6 46.0 -67.9 5.5 -0.7 4.1 -6.2 18 141 A N T 4 S+ 0 0 27 3,-0.1 -1,-0.2 18,-0.1 16,-0.1 0.715 131.9 4.4-117.1 -40.5 -3.8 1.8 -6.5 19 142 A C T 4 S- 0 0 48 2,-0.1 -2,-0.1 -3,-0.1 6,-0.0 0.716 92.8-111.9-120.7 -37.5 -2.6 -1.4 -8.2 20 143 A G < + 0 0 37 -4,-0.7 2,-0.1 1,-0.3 -3,-0.1 0.590 64.8 140.5 109.8 18.4 1.1 -1.2 -8.6 21 144 A G - 0 0 17 1,-0.1 -5,-3.5 -6,-0.1 -1,-0.3 -0.480 41.8-153.9 -89.6 165.1 1.4 -0.9 -12.5 22 145 A L S S+ 0 0 131 -7,-0.2 -1,-0.1 -2,-0.1 -8,-0.1 0.614 83.9 72.2-115.2 -21.1 3.8 1.3 -14.3 23 146 A D S S+ 0 0 159 -7,-0.0 2,-0.2 2,-0.0 -1,-0.1 0.459 114.3 8.1 -75.6 -1.9 2.0 1.9 -17.6 24 147 A H S S- 0 0 27 0, 0.0 -8,-0.3 0, 0.0 2,-0.3 -0.858 75.0-110.3-157.3-172.0 -0.4 4.2 -15.7 25 148 A H >> - 0 0 89 -2,-0.2 3,-2.6 -9,-0.1 4,-0.6 -0.820 44.2 -89.4-130.6 170.5 -1.2 5.9 -12.4 26 149 A A T 34 S+ 0 0 41 1,-0.3 -10,-0.0 -2,-0.3 -11,-0.0 0.658 126.5 53.9 -57.5 -18.1 -3.9 5.4 -9.7 27 150 A K T 34 S+ 0 0 178 1,-0.2 -1,-0.3 3,-0.0 -11,-0.0 0.491 115.0 39.0 -95.5 -7.4 -6.2 7.8 -11.6 28 151 A E T <4 S+ 0 0 138 -3,-2.6 -2,-0.2 0, 0.0 -1,-0.2 0.198 87.6 130.8-121.5 8.1 -5.9 5.9 -14.8 29 152 A C < - 0 0 26 -4,-0.6 -3,-0.0 1,-0.1 -4,-0.0 -0.099 52.4-144.4 -56.2 164.1 -6.0 2.4 -13.2 30 153 A K S S+ 0 0 163 2,-0.1 -1,-0.1 0, 0.0 -4,-0.0 0.276 74.1 67.9-122.6 6.1 -8.4 -0.1 -14.7 31 154 A L S S- 0 0 63 1,-0.2 3,-0.1 3,-0.0 -2,-0.0 -0.770 94.6 -79.3-119.0 167.2 -9.5 -1.9 -11.5 32 155 A P - 0 0 90 0, 0.0 2,-1.0 0, 0.0 -1,-0.2 -0.056 66.9 -69.5 -64.0 169.0 -11.6 -0.7 -8.5 33 156 A P - 0 0 121 0, 0.0 3,-0.0 0, 0.0 -14,-0.0 -0.474 62.1-162.2 -67.5 98.7 -10.1 1.5 -5.8 34 157 A Q - 0 0 73 -2,-1.0 2,-0.4 -3,-0.1 -15,-0.1 -0.255 24.5 -99.0 -73.5 163.7 -7.8 -1.0 -4.0 35 158 A P - 0 0 69 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.730 39.7-120.1 -79.3 134.7 -6.4 -0.6 -0.5 36 159 A K - 0 0 140 -2,-0.4 2,-0.2 8,-0.1 -18,-0.1 -0.570 34.7-148.8 -75.0 142.5 -2.8 0.7 -0.6 37 160 A K - 0 0 95 -2,-0.2 11,-0.2 1,-0.1 7,-0.2 -0.703 26.9 -76.8-115.3 161.3 -0.4 -1.7 1.0 38 161 A C > - 0 0 1 5,-0.6 4,-2.1 8,-0.3 3,-0.2 -0.375 36.2-139.0 -51.4 123.5 2.9 -1.5 3.0 39 162 A H T 4 S+ 0 0 102 1,-0.2 -1,-0.2 2,-0.2 8,-0.1 0.304 101.3 45.2 -67.9 10.9 5.7 -0.9 0.4 40 163 A F T 4 S+ 0 0 57 3,-0.1 -1,-0.2 -37,-0.1 -2,-0.0 0.654 133.8 4.9-131.3 -33.7 7.6 -3.4 2.4 41 164 A C T 4 S- 0 0 21 -3,-0.2 -2,-0.2 2,-0.1 3,-0.1 0.283 89.3-122.2-135.7 2.7 5.4 -6.4 3.3 42 165 A Q < + 0 0 99 -4,-2.1 2,-0.7 1,-0.2 -3,-0.1 0.695 60.0 150.1 57.3 24.9 2.3 -5.5 1.3 43 166 A S > - 0 0 44 1,-0.2 3,-1.1 -6,-0.1 -5,-0.6 -0.799 37.9-162.8 -88.3 111.9 0.2 -5.6 4.5 44 167 A I T 3 S+ 0 0 103 -2,-0.7 -1,-0.2 1,-0.2 -8,-0.1 0.685 82.6 83.6 -61.6 -20.4 -2.7 -3.2 4.3 45 168 A S T 3 S- 0 0 112 -7,-0.1 -1,-0.2 -3,-0.0 2,-0.2 0.894 110.7 -7.5 -46.1 -48.2 -2.8 -3.7 8.1 46 169 A H S < S- 0 0 39 -3,-1.1 -8,-0.3 -8,-0.0 2,-0.3 -0.555 77.1-105.9-133.7-165.8 -0.1 -1.0 8.4 47 170 A M > - 0 0 57 -2,-0.2 3,-2.7 -9,-0.1 4,-0.3 -0.846 35.5-104.6-124.8 163.6 2.2 1.1 6.2 48 171 A V G > S+ 0 0 45 1,-0.3 3,-0.7 -2,-0.3 -10,-0.1 0.771 120.1 74.4 -56.2 -23.0 6.0 0.8 5.5 49 172 A A G 3 S+ 0 0 91 1,-0.3 -1,-0.3 5,-0.0 -11,-0.0 0.573 115.9 17.5 -64.9 -8.7 5.9 3.8 7.8 50 173 A S G < S+ 0 0 88 -3,-2.7 -1,-0.3 0, 0.0 -2,-0.2 0.150 86.3 158.4-146.7 13.4 5.3 1.3 10.6 51 174 A C <> - 0 0 5 -3,-0.7 4,-0.8 -4,-0.3 -3,-0.1 -0.204 37.2-146.4 -52.3 130.7 6.3 -2.0 9.0 52 175 A P T 4 S+ 0 0 79 0, 0.0 -1,-0.2 0, 0.0 -4,-0.1 0.634 97.5 53.5 -72.0 -13.6 7.1 -4.6 11.7 53 176 A L T >4 S+ 0 0 45 2,-0.1 3,-2.8 1,-0.1 4,-0.2 0.938 99.2 55.1 -84.7 -54.9 9.8 -6.0 9.4 54 177 A K G >> S+ 0 0 57 1,-0.3 4,-2.6 2,-0.2 3,-1.0 0.723 89.1 80.4 -54.9 -22.0 11.8 -2.9 8.5 55 178 A A G 3< S+ 0 0 65 -4,-0.8 -1,-0.3 1,-0.3 -2,-0.1 0.674 115.2 16.6 -57.2 -18.1 12.3 -2.4 12.3 56 179 A Q G <4 S+ 0 0 116 -3,-2.8 -1,-0.3 2,-0.1 -2,-0.2 0.079 128.7 54.2-141.6 18.8 15.0 -5.0 12.0 57 180 A Q T <4 S- 0 0 123 -3,-1.0 -3,-0.2 -4,-0.2 -2,-0.2 0.531 134.1 -14.2-124.8 -23.3 15.6 -5.0 8.2 58 181 A G < + 0 0 39 -4,-2.6 -3,-0.1 -5,-0.2 -4,-0.1 -0.017 67.4 156.9-178.1 55.9 16.3 -1.3 7.5 59 182 A P - 0 0 79 0, 0.0 -4,-0.1 0, 0.0 -5,-0.1 0.575 36.1-167.6 -69.3 -10.1 15.3 0.9 10.5 60 183 A S - 0 0 93 1,-0.2 3,-0.1 -6,-0.1 -2,-0.1 0.145 26.0-119.1 50.1-169.0 17.8 3.6 9.2 61 184 A A S S+ 0 0 107 1,-0.2 2,-0.3 2,-0.0 -1,-0.2 0.154 83.9 59.9-149.8 14.1 18.9 6.6 11.3 62 185 A Q 0 0 176 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.993 360.0 360.0-148.3 150.7 17.7 9.5 9.2 63 186 A G 0 0 146 -2,-0.3 -3,-0.0 -3,-0.1 -2,-0.0 -0.657 360.0 360.0-171.5 360.0 14.4 10.8 7.8