==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-AUG-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID TRANSPORT 29-AUG-11 2LIC . COMPND 2 MOLECULE: VITELLOGENIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR H.HAVUKAINEN,O.HALSKAU JR. . 35 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4557.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 6 17.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 200 0, 0.0 2,-0.6 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 -1.6 17.0 -1.4 -7.6 2 2 A K + 0 0 173 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.721 360.0 115.8 -85.6 119.3 20.7 -0.9 -6.9 3 3 A L S S- 0 0 139 -2,-0.6 -1,-0.2 2,-0.0 0, 0.0 0.159 82.4-101.2-167.7 19.8 21.3 2.4 -5.1 4 4 A K - 0 0 167 -3,-0.1 2,-0.1 1,-0.0 -2,-0.1 0.951 49.0-162.2 47.2 90.8 22.6 1.4 -1.8 5 5 A Q + 0 0 108 1,-0.1 -1,-0.0 2,-0.1 -3,-0.0 -0.294 54.7 53.5 -91.8 179.6 19.7 1.8 0.6 6 6 A D + 0 0 96 -2,-0.1 -1,-0.1 1,-0.0 6,-0.0 0.982 62.0 128.6 56.5 83.7 19.6 2.0 4.4 7 7 A I S S- 0 0 128 4,-0.1 -2,-0.1 -3,-0.0 -3,-0.0 0.599 88.8 -24.3-128.5 -52.0 22.0 4.9 5.2 8 8 A L S S+ 0 0 164 3,-0.0 -3,-0.0 0, 0.0 5,-0.0 0.340 127.7 69.4-145.6 -7.6 20.3 7.4 7.5 9 9 A N S S- 0 0 93 5,-0.0 -4,-0.0 0, 0.0 5,-0.0 0.652 92.4-136.0 -90.0 -18.5 16.6 6.9 6.7 10 10 A L - 0 0 131 3,-0.0 -5,-0.0 0, 0.0 0, 0.0 0.964 66.4 -13.0 58.7 90.6 16.5 3.4 8.4 11 11 A R S S+ 0 0 175 2,-0.0 -4,-0.1 0, 0.0 -3,-0.0 0.449 120.2 45.2 65.3 148.6 14.6 1.1 6.1 12 12 A T S S- 0 0 103 1,-0.2 2,-1.0 2,-0.1 3,-0.3 0.949 75.6-141.5 48.5 91.0 12.4 2.3 3.2 13 13 A D S S- 0 0 46 1,-0.3 -1,-0.2 -7,-0.0 -2,-0.0 -0.716 71.7 -24.7 -85.5 102.8 14.6 4.9 1.4 14 14 A I S S- 0 0 143 -2,-1.0 2,-0.4 1,-0.1 -1,-0.3 0.950 78.4-168.5 58.1 94.5 12.2 7.7 0.2 15 15 A S - 0 0 57 -3,-0.3 -1,-0.1 2,-0.1 0, 0.0 -0.949 26.1-148.3-118.4 134.5 8.7 6.2 -0.1 16 16 A T S S+ 0 0 128 -2,-0.4 3,-0.5 2,-0.1 2,-0.3 0.781 72.4 105.4 -67.4 -27.2 5.7 7.9 -1.7 17 17 A S + 0 0 88 1,-0.2 -2,-0.1 2,-0.1 4,-0.0 -0.397 41.6 102.4 -59.1 115.1 3.4 6.1 0.7 18 18 A X S S- 0 0 184 -2,-0.3 -1,-0.2 2,-0.1 -2,-0.1 0.241 95.9 -8.1-156.8 -61.0 2.3 8.7 3.3 19 19 A S S S+ 0 0 103 -3,-0.5 2,-0.4 2,-0.0 -2,-0.1 0.026 94.8 121.3-141.3 27.2 -1.2 10.0 2.8 20 20 A S + 0 0 98 -4,-0.2 2,-0.3 2,-0.0 -2,-0.1 -0.770 30.1 167.2 -98.8 140.5 -2.2 8.5 -0.5 21 21 A I + 0 0 137 -2,-0.4 2,-0.2 -4,-0.0 -2,-0.0 -0.992 9.2 166.9-152.2 143.5 -5.3 6.3 -0.9 22 22 A S S > S- 0 0 89 -2,-0.3 3,-2.1 0, 0.0 -2,-0.0 -0.775 76.4 -25.6-163.1 112.4 -7.3 4.9 -3.8 23 23 A S T 3 S- 0 0 102 1,-0.3 -2,-0.0 -2,-0.2 0, 0.0 0.655 102.1 -87.4 57.8 15.3 -9.9 2.1 -3.8 24 24 A S T 3 S- 0 0 71 2,-0.1 -1,-0.3 4,-0.0 3,-0.1 0.805 74.2 -87.1 54.9 30.8 -8.1 0.8 -0.8 25 25 A E < - 0 0 133 -3,-2.1 3,-0.1 1,-0.2 -4,-0.0 0.058 41.2 -91.7 60.9-178.0 -5.9 -1.1 -3.2 26 26 A E S S+ 0 0 157 1,-0.1 2,-0.8 2,-0.0 3,-0.2 0.381 103.4 85.5-110.0 -0.8 -6.7 -4.6 -4.5 27 27 A N + 0 0 97 1,-0.2 -1,-0.1 -3,-0.1 4,-0.1 -0.828 51.7 98.4-107.2 95.3 -4.9 -6.5 -1.8 28 28 A D S S+ 0 0 110 -2,-0.8 -1,-0.2 2,-0.3 3,-0.1 0.133 79.8 43.7-162.1 24.3 -7.1 -6.9 1.2 29 29 A F S S- 0 0 164 1,-0.3 -1,-0.0 -3,-0.2 0, 0.0 -0.301 119.2 -39.3-175.9 77.4 -8.6 -10.4 0.9 30 30 A W - 0 0 204 1,-0.2 -2,-0.3 -3,-0.1 -1,-0.3 0.625 53.2-129.6 67.1 132.4 -6.2 -13.2 -0.0 31 31 A Q - 0 0 142 -4,-0.1 2,-0.6 -3,-0.1 -1,-0.2 -0.728 23.6-166.0-114.6 79.9 -3.5 -12.7 -2.6 32 32 A P - 0 0 120 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.547 9.1-164.4 -71.2 112.3 -3.9 -15.6 -5.1 33 33 A K - 0 0 171 -2,-0.6 2,-0.7 1,-0.1 -2,-0.0 -0.653 37.5 -81.9 -96.7 154.5 -0.7 -15.8 -7.2 34 34 A P 0 0 129 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.366 360.0 360.0 -57.5 101.3 -0.4 -17.7 -10.5 35 35 A T 0 0 207 -2,-0.7 0, 0.0 0, 0.0 0, 0.0 -0.513 360.0 360.0 -66.6 360.0 0.3 -21.2 -9.3