==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-APR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 30-SEP-11 2LJX . COMPND 2 MOLECULE: PROTEIN E6; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS; . AUTHOR K.ZANIER,A.MUHAMED SIDI,C.BOULADE-LADAME,V.RYBIN,A.CHAPPELLE . 82 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5507.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 63.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 7.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 15.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 23.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -1 A G 0 0 85 0, 0.0 2,-0.4 0, 0.0 28,-0.1 0.000 360.0 360.0 360.0 8.8 59.4 -6.1 6.7 2 0 A A + 0 0 13 2,-0.0 2,-0.4 28,-0.0 28,-0.0 -0.919 360.0 152.2-138.2 109.7 59.9 -4.6 3.2 3 1 A M - 0 0 131 -2,-0.4 2,-0.5 57,-0.1 57,-0.1 -0.890 19.3-174.6-139.4 97.9 57.7 -5.6 0.3 4 2 A F + 0 0 33 -2,-0.4 2,-0.2 55,-0.2 -2,-0.0 -0.884 5.2 178.4-104.5 124.8 57.4 -2.8 -2.3 5 3 A Q > - 0 0 130 -2,-0.5 3,-1.2 1,-0.2 5,-0.1 -0.744 30.7 -29.7-119.3 167.4 55.1 -3.2 -5.2 6 4 A D T 3 S+ 0 0 120 1,-0.3 -1,-0.2 -2,-0.2 3,-0.0 -0.123 113.2 32.0 -50.6 147.2 54.0 -1.0 -8.3 7 5 A P T 3 S+ 0 0 103 0, 0.0 2,-2.2 0, 0.0 -1,-0.3 -0.946 105.9 82.5 -88.1 16.7 53.7 1.9 -9.0 8 6 A Q < - 0 0 61 -3,-1.2 13,-0.0 1,-0.2 12,-0.0 -0.626 62.2-179.2 -79.2 74.2 56.5 2.2 -6.7 9 7 A E - 0 0 170 -2,-2.2 -1,-0.2 1,-0.0 -3,-0.1 0.638 35.6-129.1 -54.6 -19.2 59.0 1.2 -9.4 10 8 A R - 0 0 92 -5,-0.1 7,-0.0 -3,-0.1 -1,-0.0 0.682 16.3-134.6 70.0 130.5 61.8 1.5 -6.8 11 9 A P - 0 0 15 0, 0.0 3,-0.1 0, 0.0 42,-0.0 0.176 16.1-122.2 -84.8-154.2 65.0 3.5 -7.3 12 10 A R S S+ 0 0 27 1,-0.1 42,-2.8 40,-0.1 2,-0.4 0.275 86.1 80.4-130.3 -2.8 68.5 2.4 -6.5 13 11 A K S > S- 0 0 76 40,-0.2 4,-2.3 1,-0.1 5,-0.2 -0.903 71.9-138.7-112.9 140.3 69.3 5.2 -4.1 14 12 A L H > S+ 0 0 2 -2,-0.4 4,-2.2 38,-0.3 5,-0.2 0.906 101.0 46.9 -58.0 -51.8 68.3 5.4 -0.5 15 13 A P H > S+ 0 0 67 0, 0.0 4,-1.0 0, 0.0 -1,-0.2 0.869 115.1 49.5 -64.9 -33.3 67.3 9.1 -0.2 16 14 A Q H >> S+ 0 0 89 2,-0.2 4,-1.3 1,-0.2 3,-0.5 0.904 108.0 52.4 -68.6 -42.7 65.3 8.8 -3.4 17 15 A L H 3X S+ 0 0 0 -4,-2.3 4,-2.3 1,-0.3 5,-0.2 0.884 101.9 60.0 -61.7 -39.4 63.6 5.6 -2.1 18 16 A C H 3<>S+ 0 0 3 -4,-2.2 5,-2.8 1,-0.2 -1,-0.3 0.867 100.4 56.4 -56.6 -35.1 62.6 7.5 0.9 19 17 A T H X<5S+ 0 0 87 -4,-1.0 3,-1.4 -3,-0.5 -1,-0.2 0.921 105.3 50.8 -60.8 -47.3 60.8 9.9 -1.4 20 18 A E H 3<5S+ 0 0 50 -4,-1.3 -2,-0.2 1,-0.3 -1,-0.2 0.920 111.4 47.0 -53.8 -49.5 58.8 6.9 -2.8 21 19 A L T 3<5S- 0 0 54 -4,-2.3 -1,-0.3 2,-0.1 -2,-0.2 0.435 111.5-127.8 -73.1 -1.5 57.9 5.9 0.7 22 20 A Q T < 5S+ 0 0 172 -3,-1.4 -3,-0.2 1,-0.2 2,-0.2 0.724 80.0 83.6 60.9 28.4 57.0 9.6 1.3 23 21 A T S > - 0 0 70 -2,-0.2 4,-2.9 -3,-0.1 3,-2.2 -0.756 38.2 -94.1-124.2 177.6 62.9 9.8 5.3 25 23 A I T 34 S+ 0 0 9 1,-0.3 5,-0.1 -2,-0.2 19,-0.1 0.744 119.9 67.9 -58.1 -24.1 65.8 7.6 6.2 26 24 A H T 34 S+ 0 0 94 1,-0.2 -1,-0.3 18,-0.1 15,-0.1 0.479 117.1 20.0 -79.6 -7.5 64.8 8.2 9.8 27 25 A D T <4 S+ 0 0 107 -3,-2.2 -2,-0.2 14,-0.1 -1,-0.2 0.599 93.3 115.7-131.5 -39.5 61.6 6.2 9.3 28 26 A I < - 0 0 10 -4,-2.9 2,-0.9 1,-0.1 -10,-0.1 0.007 59.0-134.0 -46.0 133.9 62.1 4.0 6.2 29 27 A I + 0 0 63 -28,-0.1 2,-0.4 9,-0.0 -1,-0.1 -0.859 37.8 159.9 -95.1 107.7 62.1 0.3 6.7 30 28 A L - 0 0 2 -2,-0.9 9,-1.9 9,-0.2 32,-0.2 -0.991 15.6-170.3-124.1 131.7 64.9 -1.1 4.8 31 29 A E E -Ab 38 62A 17 30,-1.3 32,-2.6 -2,-0.4 2,-0.7 -0.536 36.0 -79.1-116.9-178.8 66.2 -4.4 5.5 32 30 A C E > - b 0 63A 0 5,-1.6 4,-1.8 30,-0.2 32,-0.2 -0.794 30.5-153.1 -76.2 124.6 69.1 -6.6 4.6 33 31 A V T 4 S+ 0 0 3 30,-1.8 -1,-0.2 -2,-0.7 31,-0.1 0.871 98.1 32.1 -56.4 -36.3 68.5 -8.0 1.3 34 32 A Y T 4 S+ 0 0 78 29,-0.3 -1,-0.1 1,-0.1 30,-0.1 0.940 129.5 31.2 -92.6 -50.9 70.7 -10.8 2.4 35 33 A C T 4 S- 0 0 53 2,-0.2 -2,-0.2 1,-0.1 3,-0.1 0.559 89.7-138.6 -92.7 -12.4 70.3 -11.2 6.2 36 34 A K < + 0 0 101 -4,-1.8 2,-0.5 1,-0.2 -3,-0.1 0.549 59.2 132.1 63.3 12.7 66.6 -10.1 6.2 37 35 A Q - 0 0 97 1,-0.0 -5,-1.6 -36,-0.0 -1,-0.2 -0.804 65.8-111.8 -95.3 130.4 67.3 -8.2 9.3 38 36 A Q B -A 31 0A 110 -2,-0.5 -7,-0.3 -7,-0.3 3,-0.1 -0.430 40.5-109.8 -58.6 128.4 66.1 -4.7 9.4 39 37 A L - 0 0 11 -9,-1.9 -9,-0.2 -2,-0.2 2,-0.2 -0.359 26.7-109.2 -65.5 140.4 69.0 -2.3 9.4 40 38 A L >> - 0 0 111 1,-0.1 4,-2.1 -3,-0.1 3,-0.9 -0.534 33.7-117.1 -61.2 132.9 69.8 -0.4 12.4 41 39 A R H 3> S+ 0 0 148 1,-0.3 4,-2.2 2,-0.2 -1,-0.1 0.813 117.8 57.4 -49.9 -32.0 68.9 3.2 11.6 42 40 A R H 3> S+ 0 0 175 2,-0.2 4,-1.8 1,-0.2 -1,-0.3 0.931 108.4 45.6 -61.1 -46.1 72.6 4.1 12.0 43 41 A E H <> S+ 0 0 29 -3,-0.9 4,-1.0 2,-0.2 -2,-0.2 0.819 108.4 56.6 -67.2 -33.6 73.5 1.5 9.3 44 42 A V H >X S+ 0 0 3 -4,-2.1 4,-1.0 1,-0.2 3,-0.5 0.911 106.1 50.7 -65.3 -39.7 70.7 2.8 7.2 45 43 A Y H 3X S+ 0 0 46 -4,-2.2 4,-2.6 1,-0.2 3,-0.3 0.905 101.4 63.3 -61.0 -39.6 72.4 6.3 7.4 46 44 A D H 3X S+ 0 0 40 -4,-1.8 4,-0.7 1,-0.2 6,-0.3 0.804 97.4 58.5 -52.0 -35.3 75.7 4.6 6.3 47 45 A F H <<>S+ 0 0 1 -4,-1.0 5,-1.1 -3,-0.5 3,-0.4 0.947 116.4 28.8 -65.0 -51.6 74.1 3.8 3.1 48 46 A A H <5S+ 0 0 31 -4,-1.0 -2,-0.2 -3,-0.3 -1,-0.2 0.644 111.6 67.5 -85.6 -17.5 73.2 7.4 2.1 49 47 A R H <5S+ 0 0 171 -4,-2.6 -1,-0.2 -5,-0.2 -2,-0.2 0.636 115.5 29.1 -76.1 -13.1 76.1 8.9 4.1 50 48 A R T <5S- 0 0 132 -4,-0.7 -3,-0.1 -3,-0.4 0, 0.0 -0.284 104.2 -93.7-118.4-150.4 78.2 7.1 1.5 51 49 A D T 5 + 0 0 119 -2,-0.1 -3,-0.1 22,-0.1 -4,-0.1 -0.012 67.3 138.0-128.7 33.3 77.4 6.3 -2.2 52 50 A L < - 0 0 16 -5,-1.1 2,-0.4 -6,-0.3 -38,-0.3 -0.036 42.7-130.0 -72.8 175.9 76.0 2.8 -2.0 53 51 A C - 0 0 3 22,-0.7 -40,-0.2 -40,-0.1 2,-0.2 -0.948 21.9-101.6-130.5 153.4 73.0 1.5 -3.9 54 52 A I - 0 0 0 -42,-2.8 2,-0.6 -2,-0.4 9,-0.2 -0.477 27.6-149.1 -80.4 142.0 69.9 -0.4 -2.9 55 53 A V E -C 62 0A 5 7,-2.0 7,-1.3 -2,-0.2 2,-0.7 -0.948 3.2-152.7-116.8 117.6 69.7 -4.0 -3.5 56 54 A Y E -C 61 0A 27 -2,-0.6 2,-0.8 5,-0.2 7,-0.0 -0.844 9.4-145.4 -94.1 119.0 66.4 -5.5 -4.1 57 55 A R E > S-C 60 0A 118 3,-1.4 2,-3.1 -2,-0.7 3,-0.9 -0.839 83.6 -31.5 -86.3 113.4 66.2 -9.0 -3.1 58 56 A D T 3 S- 0 0 133 -2,-0.8 -1,-0.1 1,-0.2 -2,-0.1 -0.237 133.6 -36.3 71.2 -53.8 63.9 -10.5 -5.8 59 57 A G T 3 S+ 0 0 10 -2,-3.1 -1,-0.2 1,-0.2 -55,-0.2 0.262 112.3 100.3 172.7 37.3 62.1 -7.2 -6.0 60 58 A N E < S- C 0 57A 22 -3,-0.9 -3,-1.4 -57,-0.1 2,-0.5 -0.971 72.8 -99.9-134.2 148.8 61.9 -5.5 -2.6 61 59 A P E + C 0 56A 5 0, 0.0 -30,-1.3 0, 0.0 2,-0.5 -0.500 47.3 160.7 -83.8 121.2 64.1 -2.8 -1.1 62 60 A Y E -bC 31 55A 19 -7,-1.3 -7,-2.0 -2,-0.5 -30,-0.2 -0.958 27.2-143.3-137.1 149.8 66.8 -3.6 1.1 63 61 A A E -b 32 0A 0 -32,-2.6 -30,-1.8 -2,-0.5 2,-0.6 -0.218 33.2 -99.6 -90.7-171.8 69.7 -2.1 2.3 64 62 A V - 0 0 4 -32,-0.2 -32,-0.1 -21,-0.2 5,-0.1 -0.979 41.8-134.7-122.2 111.4 72.9 -3.7 3.0 65 63 A C > - 0 0 6 -2,-0.6 4,-3.0 -28,-0.1 5,-0.2 0.029 32.3 -84.7 -62.2 177.1 73.4 -4.4 6.7 66 64 A D H > S+ 0 0 98 1,-0.2 4,-0.8 2,-0.2 -1,-0.1 0.853 128.9 41.7 -46.6 -49.4 76.6 -3.7 8.9 67 65 A K H > S+ 0 0 118 1,-0.2 4,-0.7 2,-0.2 3,-0.5 0.926 119.0 42.5 -70.3 -47.9 78.1 -7.0 8.0 68 66 A C H > S+ 0 0 8 1,-0.2 4,-3.4 2,-0.2 3,-0.3 0.768 99.9 73.5 -72.8 -28.2 77.3 -6.9 4.3 69 67 A L H X S+ 0 0 11 -4,-3.0 4,-0.7 1,-0.3 -1,-0.2 0.859 98.0 46.9 -57.1 -38.3 78.2 -3.3 4.0 70 68 A K H < S+ 0 0 145 -4,-0.8 -1,-0.3 -3,-0.5 -2,-0.2 0.817 117.1 45.3 -74.7 -27.8 81.9 -4.0 4.2 71 69 A F H < S+ 0 0 119 -4,-0.7 3,-0.5 -3,-0.3 -2,-0.2 0.917 121.9 33.1 -76.6 -48.7 81.4 -6.9 1.7 72 70 A Y H >< S+ 0 0 90 -4,-3.4 3,-1.4 1,-0.2 -2,-0.2 0.230 81.0 106.1-102.6 14.3 79.3 -5.1 -0.9 73 71 A S T 3< S+ 0 0 58 -4,-0.7 -1,-0.2 1,-0.3 -3,-0.1 0.695 71.5 72.6 -65.1 -18.1 80.6 -1.6 -0.6 74 72 A K T 3 S+ 0 0 183 -3,-0.5 2,-0.9 -4,-0.1 -1,-0.3 0.840 83.2 76.6 -61.2 -36.8 82.3 -2.4 -4.0 75 73 A I < + 0 0 46 -3,-1.4 -22,-0.7 -22,-0.1 2,-0.5 -0.683 55.8 168.1 -84.3 104.5 78.9 -2.1 -5.6 76 74 A S S S- 0 0 45 -2,-0.9 -24,-0.1 1,-0.3 -3,-0.1 -0.782 71.4 -26.8-121.6 84.3 78.0 1.5 -5.9 77 75 A E S S- 0 0 51 -2,-0.5 -1,-0.3 -65,-0.1 2,-0.3 0.904 74.6-168.4 74.1 104.0 74.9 1.6 -8.2 78 76 A Y - 0 0 142 -3,-0.1 -1,-0.1 2,-0.1 -3,-0.0 -0.827 26.3-134.8-119.6 158.1 74.7 -1.3 -10.5 79 77 A R + 0 0 178 -2,-0.3 2,-1.4 2,-0.1 -1,-0.0 -0.152 49.3 145.0-108.3 38.2 72.4 -1.9 -13.5 80 78 A H + 0 0 86 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.626 28.1 165.7 -79.2 93.2 71.5 -5.4 -12.7 81 79 A Y 0 0 136 -2,-1.4 -2,-0.1 1,-0.2 0, 0.0 -0.838 360.0 360.0-120.1 155.9 68.0 -5.5 -13.9 82 80 A S 0 0 178 -2,-0.3 -1,-0.2 0, 0.0 0, 0.0 0.996 360.0 360.0 64.7 360.0 65.4 -8.1 -14.7