==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-APR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 30-SEP-11 2LJZ . COMPND 2 MOLECULE: PROTEIN E6; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS; . AUTHOR K.ZANIER,A.MUHAMED SIDI,C.BOULADE-LADAME,V.RYBIN,A.CHAPPELLE . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4843.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 13.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 77 A G 0 0 70 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-136.2 45.9 0.7 -0.4 2 78 A A + 0 0 28 51,-0.1 2,-0.3 2,-0.1 51,-0.1 -0.884 360.0 126.3-175.3 146.6 48.4 0.1 -3.2 3 79 A M - 0 0 134 -2,-0.3 2,-0.6 2,-0.1 48,-0.1 -0.825 64.8 -79.3 177.8 164.4 49.6 1.3 -6.4 4 80 A S S S+ 0 0 66 -2,-0.3 2,-0.3 46,-0.1 48,-0.2 -0.779 77.0 112.4 -82.7 125.0 53.0 2.2 -7.6 5 81 A Y E -A 51 0A 75 46,-0.9 46,-3.4 -2,-0.6 2,-0.5 -0.931 67.3 -86.4-173.1 174.9 54.0 5.7 -6.4 6 82 A S E +A 50 0A 43 -2,-0.3 2,-0.3 44,-0.3 44,-0.3 -0.847 48.3 168.5-104.1 136.3 56.4 7.2 -4.0 7 83 A L E -A 49 0A 38 42,-1.7 42,-2.1 -2,-0.5 2,-0.5 -0.899 42.9 -91.4-140.0 161.2 55.5 7.6 -0.4 8 84 A Y E > -A 48 0A 113 -2,-0.3 3,-1.7 40,-0.2 4,-0.5 -0.693 33.5-145.7 -72.7 121.8 57.0 8.4 3.0 9 85 A G G > S+ 0 0 0 38,-0.9 3,-2.3 -2,-0.5 4,-0.3 0.855 93.8 70.1 -58.5 -41.8 58.1 5.2 4.5 10 86 A T G 3 S+ 0 0 37 32,-1.7 3,-0.3 1,-0.3 -1,-0.3 0.732 103.6 45.0 -46.6 -29.0 57.3 6.3 7.9 11 87 A T G X> S+ 0 0 65 -3,-1.7 3,-2.1 1,-0.2 4,-0.8 0.559 83.6 100.7 -94.3 -11.3 53.6 6.1 6.8 12 88 A L H <> + 0 0 0 -3,-2.3 4,-1.3 -4,-0.5 5,-0.4 0.610 63.9 76.7 -54.1 -16.0 53.9 2.7 5.0 13 89 A E H 34 S+ 0 0 115 -4,-0.3 4,-0.4 -3,-0.3 -1,-0.3 0.807 100.5 40.6 -68.9 -26.6 52.4 0.8 7.9 14 90 A Q H <4 S+ 0 0 97 -3,-2.1 -1,-0.2 2,-0.1 -2,-0.2 0.783 106.0 70.9 -84.8 -30.5 48.9 2.0 6.9 15 91 A Q H < S+ 0 0 3 -4,-0.8 -2,-0.2 1,-0.2 -3,-0.1 0.943 116.4 9.7 -54.9 -68.1 49.5 1.5 3.4 16 92 A Y S < S- 0 0 34 -4,-1.3 -1,-0.2 2,-0.4 -2,-0.1 0.628 89.7-127.5 -92.0 -16.7 49.6 -2.2 2.9 17 93 A N S S+ 0 0 144 -4,-0.4 -4,-0.1 -5,-0.4 -3,-0.1 0.349 97.5 87.2 75.2 -1.4 48.3 -3.1 6.4 18 94 A K S S- 0 0 67 -6,-0.3 -2,-0.4 4,-0.0 -1,-0.2 -0.999 82.5-142.5-122.7 113.1 51.4 -5.2 6.2 19 95 A P >> - 0 0 39 0, 0.0 4,-2.7 0, 0.0 3,-2.3 -0.195 28.3 -92.1 -77.7 175.6 54.2 -3.0 7.5 20 96 A L T 34 S+ 0 0 0 1,-0.3 5,-0.1 2,-0.2 20,-0.0 0.898 125.9 63.6 -50.0 -41.9 57.8 -2.7 6.4 21 97 A S T 34 S+ 0 0 83 1,-0.2 -1,-0.3 15,-0.1 4,-0.0 0.578 118.2 26.9 -63.3 -10.0 58.6 -5.2 9.0 22 98 A D T <4 S+ 0 0 95 -3,-2.3 -2,-0.2 2,-0.0 -1,-0.2 0.574 104.0 91.3-121.4 -24.5 56.5 -7.7 7.1 23 99 A L S < S- 0 0 2 -4,-2.7 2,-0.6 1,-0.1 32,-0.2 -0.526 80.7-119.4 -83.7 135.0 56.7 -6.3 3.6 24 100 A L E +b 55 0A 76 30,-0.9 32,-0.9 -2,-0.2 2,-0.4 -0.662 46.3 178.3 -69.4 123.4 59.4 -7.6 1.3 25 101 A I E -b 56 0A 1 -2,-0.6 9,-0.8 9,-0.3 2,-0.3 -0.983 8.7-174.8-136.3 141.1 61.2 -4.5 0.7 26 102 A R E -bC 57 33A 77 30,-0.9 32,-2.6 -2,-0.4 29,-0.0 -0.957 32.3 -92.6-142.0 157.2 64.3 -3.9 -1.4 27 103 A C E > -b 58 0A 0 5,-3.2 4,-0.8 -2,-0.3 32,-0.3 -0.211 32.0-135.3 -56.0 157.5 66.8 -1.4 -2.4 28 104 A I T 4 S+ 0 0 30 30,-2.2 31,-0.2 29,-0.2 -1,-0.1 0.842 104.7 28.2 -90.5 -33.5 66.0 0.4 -5.6 29 105 A N T 4 S+ 0 0 10 29,-0.3 45,-0.2 3,-0.1 -1,-0.1 0.704 132.6 38.2 -96.4 -28.2 69.4 0.2 -7.1 30 106 A C T 4 S- 0 0 30 28,-0.2 -2,-0.2 2,-0.2 29,-0.1 0.876 81.5-149.7 -90.7 -39.0 70.3 -2.9 -5.3 31 107 A Q < + 0 0 86 -4,-0.8 -3,-0.1 1,-0.3 41,-0.0 0.584 53.0 141.1 68.8 16.5 67.1 -4.9 -5.4 32 108 A K - 0 0 70 1,-0.1 -5,-3.2 0, 0.0 2,-0.4 -0.750 63.9-109.0 -86.1 126.2 68.4 -6.2 -2.1 33 109 A P B -C 26 0A 69 0, 0.0 -7,-0.3 0, 0.0 2,-0.3 -0.454 32.7-141.4 -64.8 116.4 65.8 -6.6 0.4 34 110 A L - 0 0 2 -9,-0.8 -9,-0.3 -2,-0.4 26,-0.0 -0.611 13.1-146.3 -81.4 134.1 66.3 -4.0 3.1 35 111 A S >> - 0 0 56 -2,-0.3 4,-2.3 -11,-0.1 3,-1.0 -0.363 43.2 -75.3 -93.0 174.8 65.7 -5.1 6.6 36 112 A P H 3> S+ 0 0 67 0, 0.0 4,-2.4 0, 0.0 5,-0.1 0.800 130.7 64.9 -41.6 -33.3 64.2 -2.9 9.5 37 113 A E H 34 S+ 0 0 127 2,-0.2 4,-0.2 1,-0.2 -3,-0.1 0.956 111.4 29.3 -53.9 -56.5 67.6 -1.2 9.5 38 114 A E H <> S+ 0 0 2 -3,-1.0 4,-0.6 1,-0.2 3,-0.4 0.710 116.9 61.3 -84.9 -18.1 67.4 0.3 6.1 39 115 A K H >X S+ 0 0 16 -4,-2.3 4,-1.0 1,-0.2 3,-0.9 0.859 95.8 61.8 -68.1 -37.3 63.6 0.5 6.4 40 116 A Q H 3X>S+ 0 0 87 -4,-2.4 4,-2.2 -5,-0.3 5,-1.0 0.642 92.6 65.2 -68.8 -11.3 64.2 2.8 9.4 41 117 A R H 345S+ 0 0 20 -3,-0.4 6,-1.8 -4,-0.2 4,-0.4 0.911 107.7 39.5 -72.8 -39.4 65.9 5.1 7.0 42 118 A H H <<5S+ 0 0 0 -3,-0.9 -32,-1.7 -4,-0.6 -33,-0.4 0.618 125.9 38.9 -84.5 -16.2 62.6 5.6 5.3 43 119 A L H <5S+ 0 0 20 -4,-1.0 -2,-0.2 -34,-0.3 -3,-0.2 0.875 125.3 30.2 -97.0 -59.6 60.7 5.6 8.6 44 120 A D T <5S+ 0 0 121 -4,-2.2 -3,-0.2 1,-0.2 -2,-0.1 0.979 137.6 26.9 -63.5 -59.7 62.9 7.6 11.0 45 121 A K S > - 0 0 2 -2,-0.4 4,-3.0 -28,-0.1 3,-1.0 -0.299 45.2 -86.0 -67.0 169.1 69.9 0.9 1.4 61 137 A M H 3> S+ 0 0 96 1,-0.3 4,-1.5 2,-0.2 5,-0.3 0.868 129.5 50.8 -39.3 -53.8 72.7 2.8 3.2 62 138 A S H 3> S+ 0 0 74 1,-0.2 4,-2.4 2,-0.2 -1,-0.3 0.860 119.3 36.5 -60.3 -33.8 75.1 2.5 0.4 63 139 A C H <4 S+ 0 0 13 -3,-1.0 -1,-0.2 2,-0.2 -2,-0.2 0.745 108.6 60.1 -94.1 -29.3 72.6 3.8 -2.0 64 140 A S H < S+ 0 0 36 -4,-3.0 -1,-0.2 2,-0.1 -2,-0.2 0.736 121.7 29.6 -69.0 -25.1 70.9 6.3 0.1 65 141 A R H < S+ 0 0 207 -4,-1.5 2,-0.9 -5,-0.3 3,-0.3 0.873 124.0 41.7 -95.4 -63.0 74.3 7.9 0.3 66 142 A S >< + 0 0 67 -4,-2.4 3,-2.1 -5,-0.3 -2,-0.1 -0.117 67.8 141.5 -87.5 43.4 76.2 7.1 -2.9 67 143 A S T 3 + 0 0 51 -2,-0.9 -1,-0.2 1,-0.3 3,-0.1 0.689 61.2 72.2 -58.0 -23.2 73.1 7.8 -5.1 68 144 A R T 3 S+ 0 0 228 -3,-0.3 2,-1.2 1,-0.2 -1,-0.3 0.812 89.2 62.3 -64.3 -30.3 75.4 9.4 -7.7 69 145 A T S < S- 0 0 113 -3,-2.1 2,-1.0 -6,-0.1 -1,-0.2 -0.680 78.0-175.3 -99.1 80.6 76.8 6.0 -8.6 70 146 A R + 0 0 112 -2,-1.2 2,-0.4 -3,-0.1 -3,-0.1 -0.684 19.1 143.1 -87.6 102.1 73.7 4.4 -9.9 71 147 A R - 0 0 144 -2,-1.0 -2,-0.1 1,-0.1 0, 0.0 -0.976 40.2-152.9-134.6 150.6 74.2 0.7 -10.7 72 148 A E S S+ 0 0 85 -2,-0.4 -1,-0.1 1,-0.1 -2,-0.0 0.707 105.0 27.1 -96.9 -28.0 71.9 -2.1 -10.3 73 149 A T S S- 0 0 102 -42,-0.0 -1,-0.1 0, 0.0 -43,-0.1 0.261 104.7-128.9-113.8 6.8 74.5 -4.8 -9.9 74 150 A Q 0 0 99 -45,-0.2 -44,-0.0 -5,-0.0 -3,-0.0 0.446 360.0 360.0 57.9 11.3 76.9 -2.2 -8.5 75 151 A L 0 0 172 0, 0.0 -4,-0.0 0, 0.0 -1,-0.0 -0.511 360.0 360.0-175.5 360.0 79.5 -3.4 -11.0