==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-FEB-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID TRANSPORT 11-OCT-11 2LKI . COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA; . AUTHOR A.LEMAK,S.SRISAILAM,J.LUKIN,A.YEE,M.MONTECCHIO,A.SEMESI,C.AR . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5085.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 78.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 18.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 43.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 107 0, 0.0 4,-0.1 0, 0.0 74,-0.1 0.000 360.0 360.0 360.0 158.4 -7.2 -8.4 -4.4 2 2 A Q > + 0 0 148 72,-0.2 3,-1.1 2,-0.1 4,-0.3 0.845 360.0 47.3 -94.1 -55.0 -4.0 -10.5 -4.3 3 3 A H T 3> S+ 0 0 58 71,-0.3 4,-2.0 1,-0.3 3,-0.3 0.520 83.3 90.9 -78.2 -9.2 -1.4 -8.2 -2.9 4 4 A L H 3> S+ 0 0 37 1,-0.2 4,-2.2 2,-0.2 -1,-0.3 0.798 86.4 56.8 -53.2 -32.5 -3.5 -6.9 0.1 5 5 A E H <> S+ 0 0 94 -3,-1.1 4,-1.6 2,-0.2 -1,-0.2 0.928 109.4 40.9 -66.1 -50.6 -2.0 -9.7 2.2 6 6 A A H > S+ 0 0 36 -3,-0.3 4,-1.8 -4,-0.3 -2,-0.2 0.786 114.1 54.5 -72.7 -29.6 1.7 -8.8 1.6 7 7 A V H X S+ 0 0 0 -4,-2.0 4,-2.4 2,-0.2 5,-0.2 0.937 111.3 43.1 -67.8 -48.3 0.8 -5.0 2.1 8 8 A R H X S+ 0 0 28 -4,-2.2 4,-2.1 1,-0.2 -2,-0.2 0.805 112.0 55.9 -70.3 -28.3 -0.8 -5.6 5.5 9 9 A N H X S+ 0 0 72 -4,-1.6 4,-0.8 2,-0.2 -1,-0.2 0.926 108.9 47.6 -63.1 -46.5 2.1 -7.9 6.4 10 10 A I H >X S+ 0 0 4 -4,-1.8 4,-2.9 2,-0.2 3,-0.8 0.933 115.1 42.9 -59.6 -53.9 4.5 -5.0 5.6 11 11 A L H 3X>S+ 0 0 3 -4,-2.4 4,-2.0 1,-0.2 5,-0.5 0.862 110.7 57.3 -64.5 -34.8 2.6 -2.4 7.7 12 12 A G H 3<>S+ 0 0 4 -4,-2.1 6,-2.0 -5,-0.2 5,-0.6 0.681 114.6 39.6 -67.6 -20.5 2.1 -5.1 10.4 13 13 A D H <<5S+ 0 0 106 -3,-0.8 -2,-0.2 -4,-0.8 -1,-0.2 0.889 123.0 36.7 -86.1 -56.9 6.0 -5.3 10.5 14 14 A V H <5S+ 0 0 37 -4,-2.9 -3,-0.2 1,-0.2 -2,-0.2 0.935 129.6 32.2 -66.1 -54.0 7.0 -1.6 10.1 15 15 A L T <5S- 0 0 9 -4,-2.0 -1,-0.2 -5,-0.2 -3,-0.2 0.587 110.6-130.0 -80.6 -14.5 4.1 -0.0 12.2 16 16 A N T < + 0 0 130 -5,-0.5 -3,-0.2 -6,-0.3 -4,-0.2 0.978 55.0 149.8 64.2 62.0 4.3 -3.2 14.3 17 17 A L > < - 0 0 29 -5,-0.6 3,-2.0 -6,-0.2 2,-1.7 0.671 25.5-177.1 -86.3 -26.1 0.6 -4.3 14.5 18 18 A G T 3 S+ 0 0 46 -6,-2.0 -1,-0.2 1,-0.3 4,-0.1 -0.440 76.9 5.6 67.4 -83.9 1.7 -8.0 14.8 19 19 A E T > S+ 0 0 136 -2,-1.7 3,-1.1 2,-0.1 4,-0.5 0.678 121.4 72.1-100.2 -25.7 -1.7 -9.7 14.8 20 20 A R G X> S+ 0 0 89 -3,-2.0 3,-0.7 1,-0.3 4,-0.5 0.789 90.4 61.9 -66.3 -28.0 -3.8 -6.5 14.1 21 21 A K G 34 S+ 0 0 45 1,-0.2 3,-0.5 2,-0.2 -1,-0.3 0.842 103.3 50.7 -58.8 -34.0 -2.6 -6.5 10.5 22 22 A H G <4 S+ 0 0 99 -3,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.530 103.5 56.6 -90.8 -10.6 -4.2 -9.9 10.0 23 23 A T T <4 S+ 0 0 111 -3,-0.7 2,-0.3 -4,-0.5 -1,-0.2 0.490 95.3 79.9 -97.5 -7.1 -7.7 -8.9 11.4 24 24 A L < - 0 0 10 -4,-0.5 2,-0.1 -3,-0.5 -16,-0.1 -0.783 65.4-159.0-103.1 147.6 -8.1 -6.0 8.9 25 25 A T > - 0 0 88 -2,-0.3 3,-0.7 4,-0.0 45,-0.5 -0.375 37.0 -83.3-113.8-172.6 -9.2 -6.5 5.2 26 26 A A T 3 S+ 0 0 18 1,-0.2 45,-2.7 44,-0.2 44,-0.5 0.958 127.5 47.4 -60.9 -53.5 -9.0 -4.6 1.9 27 27 A S T 3 S+ 0 0 114 43,-0.2 -1,-0.2 42,-0.1 2,-0.2 0.521 95.2 103.4 -69.5 -5.5 -12.1 -2.4 2.5 28 28 A S S < S- 0 0 29 -3,-0.7 42,-2.1 1,-0.1 43,-0.4 -0.544 77.6-111.2 -77.9 150.4 -10.6 -1.7 6.0 29 29 A V B +A 69 0A 63 40,-0.2 40,-0.3 -2,-0.2 39,-0.1 -0.364 31.1 176.4 -83.5 151.7 -9.0 1.7 6.7 30 30 A L > + 0 0 2 38,-1.8 4,-2.7 37,-0.4 2,-0.6 0.637 68.7 66.1-114.8 -62.5 -5.2 2.2 7.3 31 31 A L B 4 S+b 34 0B 76 36,-2.2 -1,-0.2 1,-0.2 7,-0.1 -0.552 124.9 4.7 -65.6 110.5 -4.7 6.1 7.6 32 32 A G T 4 S+ 0 0 72 2,-0.7 -1,-0.2 -2,-0.6 36,-0.1 -0.211 125.3 68.1 104.8 -40.7 -6.6 6.9 10.8 33 33 A N T 4 S+ 0 0 56 -3,-0.1 -2,-0.2 1,-0.1 -3,-0.1 0.863 92.6 63.4 -77.6 -40.7 -7.5 3.3 11.7 34 34 A I B >< S-b 31 0B 5 -4,-2.7 3,-0.7 1,-0.1 -2,-0.7 -0.793 70.8-158.5 -84.5 121.9 -3.9 2.4 12.5 35 35 A P T 3 S+ 0 0 98 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.693 93.4 55.5 -71.1 -17.4 -2.6 4.5 15.5 36 36 A E T 3 S+ 0 0 95 2,-0.1 2,-1.2 5,-0.0 5,-0.1 0.551 75.9 104.9 -93.9 -12.5 1.0 3.9 14.3 37 37 A L < + 0 0 19 -3,-0.7 -5,-0.3 -7,-0.2 2,-0.2 -0.614 55.0 136.9 -76.9 94.9 0.5 5.3 10.7 38 38 A D > - 0 0 115 -2,-1.2 4,-2.0 -7,-0.1 5,-0.2 -0.547 63.0 -65.4-132.5-168.8 2.3 8.7 11.2 39 39 A S H >> S+ 0 0 83 2,-0.2 4,-1.3 1,-0.2 3,-0.7 0.956 128.0 21.2 -56.1 -72.9 4.8 11.1 9.3 40 40 A M H 3> S+ 0 0 149 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.745 120.4 66.4 -70.5 -21.1 8.2 9.2 9.0 41 41 A A H 3> S+ 0 0 23 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.815 98.7 49.2 -68.4 -34.6 6.1 6.0 9.5 42 42 A V H S+ 0 0 36 -4,-2.0 5,-0.9 2,-0.2 4,-0.7 0.895 112.1 48.6 -56.8 -45.9 9.4 -0.9 -2.9 51 51 A E H ><5S+ 0 0 125 -4,-1.9 3,-0.7 2,-0.2 -2,-0.2 0.979 115.5 38.0 -59.1 -64.1 11.7 -3.5 -1.2 52 52 A Y H 3<5S+ 0 0 140 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.796 123.0 40.8 -67.0 -37.5 9.3 -6.6 -1.1 53 53 A F H 3<5S- 0 0 26 -4,-2.1 -1,-0.3 -5,-0.3 -2,-0.2 0.486 101.5-135.2 -91.6 -6.0 7.6 -6.0 -4.4 54 54 A D T <<5 + 0 0 146 -4,-0.7 2,-0.2 -3,-0.7 -3,-0.2 0.765 69.6 94.0 63.1 34.6 10.9 -5.1 -6.1 55 55 A F S > - 0 0 82 -2,-0.4 3,-1.6 1,-0.1 4,-0.9 -0.413 14.2-127.9 -71.8 143.7 5.7 7.0 -8.8 59 59 A D G >4 S+ 0 0 129 1,-0.3 3,-0.7 2,-0.2 -1,-0.1 0.873 107.7 58.4 -57.7 -41.6 5.8 10.2 -6.6 60 60 A D G 34 S+ 0 0 150 1,-0.2 -1,-0.3 3,-0.0 -2,-0.1 0.403 111.5 42.2 -75.6 1.4 2.9 11.8 -8.5 61 61 A E G <4 S+ 0 0 54 -3,-1.6 2,-0.7 2,-0.0 -1,-0.2 0.435 92.0 93.1-120.9 -11.1 0.6 8.8 -7.5 62 62 A I << + 0 0 47 -4,-0.9 2,-0.2 -3,-0.7 3,-0.0 -0.798 55.7 144.0 -82.4 113.9 1.8 8.5 -3.9 63 63 A S >> - 0 0 66 -2,-0.7 4,-0.6 1,-0.1 3,-0.6 -0.825 67.8-101.1-136.1 175.1 -0.7 10.5 -1.8 64 64 A A G >4 S+ 0 0 54 -2,-0.2 3,-0.8 1,-0.2 -33,-0.2 0.850 124.5 61.7 -64.5 -33.7 -2.4 10.4 1.7 65 65 A Q G >4 S+ 0 0 132 1,-0.2 3,-0.8 2,-0.2 4,-0.3 0.690 92.9 65.1 -64.9 -21.4 -5.4 9.1 -0.3 66 66 A T G <4 S+ 0 0 8 -3,-0.6 3,-0.4 1,-0.2 -1,-0.2 0.867 104.0 44.4 -68.1 -36.7 -3.2 6.1 -1.4 67 67 A F G << S+ 0 0 10 -3,-0.8 -36,-2.2 -4,-0.6 -37,-0.4 0.197 81.5 105.9 -95.7 16.6 -3.0 4.9 2.3 68 68 A E S < S+ 0 0 94 -3,-0.8 -38,-1.8 -38,-0.2 2,-0.3 0.918 92.8 0.2 -61.9 -46.7 -6.8 5.5 3.0 69 69 A T B > -A 29 0A 26 -3,-0.4 4,-1.4 -40,-0.3 3,-0.4 -0.926 69.6-113.6-139.5 163.4 -7.5 1.7 2.9 70 70 A L H > S+ 0 0 0 -42,-2.1 4,-2.3 -44,-0.5 -44,-0.2 0.803 117.9 58.7 -64.9 -31.0 -5.6 -1.6 2.4 71 71 A G H > S+ 0 0 10 -45,-2.7 4,-2.4 -43,-0.4 -1,-0.2 0.783 99.7 57.3 -70.7 -29.5 -7.6 -2.1 -0.9 72 72 A S H > S+ 0 0 19 -3,-0.4 4,-2.6 -46,-0.4 -2,-0.2 0.963 110.9 41.1 -64.1 -52.9 -6.2 1.2 -2.1 73 73 A L H X S+ 0 0 7 -4,-1.4 4,-2.5 2,-0.2 5,-0.3 0.907 115.9 51.7 -59.3 -45.4 -2.5 -0.0 -1.7 74 74 A A H X S+ 0 0 0 -4,-2.3 4,-1.8 2,-0.2 -71,-0.3 0.914 112.2 45.4 -58.6 -46.4 -3.4 -3.5 -3.1 75 75 A L H X S+ 0 0 63 -4,-2.4 4,-1.2 2,-0.2 -2,-0.2 0.955 113.2 49.9 -61.0 -53.5 -5.1 -1.9 -6.2 76 76 A F H >X S+ 0 0 67 -4,-2.6 4,-1.9 1,-0.2 3,-0.8 0.910 114.0 42.9 -55.3 -52.7 -2.2 0.5 -6.8 77 77 A V H 3X S+ 0 0 3 -4,-2.5 4,-2.2 1,-0.2 -1,-0.2 0.846 112.7 54.8 -65.3 -32.1 0.6 -2.1 -6.6 78 78 A E H 3< S+ 0 0 35 -4,-1.8 -1,-0.2 -5,-0.3 -2,-0.2 0.675 109.1 48.1 -75.3 -18.7 -1.6 -4.6 -8.7 79 79 A H H