==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-AUG-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 23-OCT-11 2LKZ . COMPND 2 MOLECULE: RNA-BINDING PROTEIN 5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Z.SONG,P.WU,J.ZHANG,J.WU,Y.SHI . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7483.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 44.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 18.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 244 0, 0.0 2,-0.3 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 44.8 14.1 18.6 -3.8 2 2 A G - 0 0 62 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.983 360.0 -11.7 158.2-145.6 15.2 18.1 -0.2 3 3 A H - 0 0 174 -2,-0.3 2,-0.3 1,-0.1 0, 0.0 -0.587 66.1-110.7 -89.3 151.7 13.6 17.7 3.2 4 4 A H - 0 0 155 -2,-0.2 -1,-0.1 1,-0.1 0, 0.0 -0.649 11.8-152.7 -83.7 134.5 9.9 18.4 3.9 5 5 A H S S+ 0 0 190 -2,-0.3 2,-0.2 2,-0.0 -1,-0.1 0.434 81.4 6.8 -83.7 0.9 9.1 21.4 6.1 6 6 A H S S- 0 0 85 0, 0.0 2,-0.3 0, 0.0 -2,-0.1 -0.770 82.1 -95.0-155.4-160.5 5.9 19.7 7.2 7 7 A H + 0 0 173 -2,-0.2 -2,-0.0 1,-0.1 3,-0.0 -0.989 35.8 152.4-137.3 145.3 4.0 16.5 7.0 8 8 A H - 0 0 152 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.139 58.7-105.7-156.7 21.1 1.2 15.2 4.8 9 9 A M + 0 0 106 1,-0.1 58,-0.1 57,-0.0 57,-0.1 0.487 40.1 175.3 58.7 147.1 1.5 11.5 4.7 10 10 A D + 0 0 60 1,-0.2 50,-1.1 56,-0.1 2,-0.3 0.129 49.8 78.0-174.0 33.1 3.0 9.6 1.7 11 11 A T E -A 59 0A 17 48,-0.2 81,-1.1 52,-0.0 2,-0.2 -0.991 55.1-150.7-152.7 143.4 3.3 6.0 2.6 12 12 A I E -AB 58 91A 4 46,-2.9 46,-2.4 -2,-0.3 2,-0.3 -0.709 6.9-156.5-112.3 164.7 0.9 3.0 2.9 13 13 A I E -AB 57 90A 22 77,-2.2 77,-1.9 -2,-0.2 2,-0.3 -0.998 10.9-136.1-144.7 138.2 1.0 -0.2 5.0 14 14 A L E -AB 56 89A 17 42,-2.4 42,-1.1 -2,-0.3 2,-0.3 -0.737 20.8-163.8 -95.1 140.8 -0.6 -3.6 4.6 15 15 A R E +AB 55 88A 149 73,-1.1 73,-1.3 -2,-0.3 40,-0.2 -0.929 62.0 21.4-125.5 149.3 -2.2 -5.3 7.6 16 16 A N S S+ 0 0 70 38,-0.8 2,-0.3 -2,-0.3 -1,-0.2 0.977 77.2 174.0 62.2 59.2 -3.3 -8.9 8.2 17 17 A I - 0 0 9 37,-0.6 -1,-0.2 -3,-0.2 69,-0.1 -0.741 30.2-116.5 -99.7 146.8 -0.9 -10.5 5.7 18 18 A A > - 0 0 7 -2,-0.3 3,-1.2 67,-0.1 36,-0.2 -0.392 21.4-118.7 -77.3 157.4 -0.4 -14.3 5.3 19 19 A P T 3 S+ 0 0 59 0, 0.0 -1,-0.1 0, 0.0 27,-0.1 0.409 109.1 70.1 -75.4 3.4 3.0 -16.0 6.0 20 20 A H T 3 S+ 0 0 134 63,-0.1 2,-0.3 31,-0.1 63,-0.0 0.218 74.3 113.1-104.2 12.3 3.0 -17.1 2.4 21 21 A T < - 0 0 12 -3,-1.2 31,-0.4 31,-0.1 2,-0.2 -0.619 42.4-179.8 -87.6 145.6 3.6 -13.6 1.0 22 22 A V > - 0 0 64 -2,-0.3 4,-1.8 29,-0.1 5,-0.2 -0.802 43.5-102.5-135.1 176.3 6.8 -12.6 -0.7 23 23 A V H > S+ 0 0 56 -2,-0.2 4,-1.2 1,-0.2 5,-0.1 0.793 119.8 55.5 -71.6 -28.0 8.4 -9.6 -2.4 24 24 A D H > S+ 0 0 127 2,-0.2 4,-2.3 3,-0.1 5,-0.2 0.895 107.3 48.5 -71.2 -41.2 7.7 -11.0 -5.8 25 25 A S H > S+ 0 0 56 1,-0.2 4,-3.2 2,-0.2 5,-0.3 0.976 110.2 48.8 -63.1 -57.3 3.9 -11.4 -5.1 26 26 A I H X S+ 0 0 21 -4,-1.8 4,-1.8 1,-0.2 -1,-0.2 0.843 111.8 54.0 -51.9 -35.2 3.4 -7.9 -3.8 27 27 A M H < S+ 0 0 55 -4,-1.2 4,-0.3 2,-0.2 3,-0.3 0.981 115.9 34.1 -64.3 -58.9 5.3 -6.6 -6.8 28 28 A T H < S+ 0 0 95 -4,-2.3 -2,-0.2 1,-0.2 3,-0.2 0.752 116.3 59.6 -68.6 -24.3 3.2 -8.3 -9.4 29 29 A A H < S+ 0 0 47 -4,-3.2 -1,-0.2 -5,-0.2 -2,-0.2 0.841 114.2 33.9 -73.0 -34.4 0.1 -7.8 -7.2 30 30 A L S X S+ 0 0 16 -4,-1.8 4,-2.1 -3,-0.3 -1,-0.2 0.290 93.5 97.8-102.5 7.8 0.5 -4.0 -7.2 31 31 A S T 4 S+ 0 0 79 -4,-0.3 3,-0.2 1,-0.2 -2,-0.1 0.955 90.1 36.4 -61.3 -53.4 1.8 -3.9 -10.8 32 32 A P T 4 S+ 0 0 107 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.527 119.1 53.7 -78.2 -4.8 -1.5 -3.0 -12.5 33 33 A Y T 4 S- 0 0 78 1,-0.4 2,-0.3 -3,-0.2 -2,-0.2 0.710 125.4 -45.8 -99.4 -27.0 -2.4 -0.9 -9.5 34 34 A A < - 0 0 28 -4,-2.1 2,-0.5 -3,-0.2 -1,-0.4 -0.975 60.0 -81.7 175.8-180.0 0.7 1.3 -9.5 35 35 A S - 0 0 95 -2,-0.3 26,-0.3 -3,-0.1 2,-0.2 -0.923 40.0-175.6-111.9 130.4 4.5 1.4 -9.7 36 36 A L - 0 0 31 -2,-0.5 2,-0.4 -9,-0.1 24,-0.1 -0.536 15.3-135.4-113.0-179.2 6.8 0.7 -6.7 37 37 A A >> - 0 0 36 22,-0.3 3,-3.2 -2,-0.2 4,-0.6 -0.983 14.5-136.0-145.0 128.9 10.5 0.8 -6.1 38 38 A V G >4 S+ 0 0 113 -2,-0.4 3,-0.8 1,-0.3 -1,-0.1 0.845 112.2 49.7 -48.6 -38.9 12.7 -1.7 -4.3 39 39 A N G 34 S+ 0 0 147 1,-0.2 -1,-0.3 -3,-0.1 3,-0.1 0.380 110.4 52.4 -83.5 5.0 14.4 1.2 -2.5 40 40 A N G <4 S+ 0 0 39 -3,-3.2 19,-1.7 1,-0.1 2,-0.4 0.344 102.9 64.0-118.3 0.9 11.0 2.5 -1.5 41 41 A I E << -C 58 0A 27 -3,-0.8 2,-0.6 -4,-0.6 17,-0.2 -0.993 56.1-168.2-132.3 133.1 9.6 -0.6 0.1 42 42 A R E -C 57 0A 199 15,-0.8 15,-1.2 -2,-0.4 2,-1.0 -0.870 5.7-168.7-122.2 96.9 10.8 -2.5 3.2 43 43 A L - 0 0 41 -2,-0.6 13,-0.1 13,-0.2 -20,-0.1 -0.736 19.6-141.3 -88.8 100.7 9.2 -5.9 3.5 44 44 A I - 0 0 89 -2,-1.0 2,-0.3 11,-0.2 11,-0.2 -0.267 15.5-149.4 -60.0 144.8 10.1 -7.1 7.0 45 45 A K - 0 0 149 7,-0.2 2,-0.3 6,-0.1 7,-0.2 -0.903 0.3-141.2-120.6 149.1 10.9 -10.8 7.3 46 46 A D - 0 0 46 -2,-0.3 5,-0.0 5,-0.3 6,-0.0 -0.786 10.0-146.6-108.9 152.5 10.4 -13.2 10.3 47 47 A K S S+ 0 0 173 -2,-0.3 -1,-0.1 3,-0.2 5,-0.1 0.561 96.5 59.6 -90.4 -10.6 12.6 -16.0 11.4 48 48 A Q S S+ 0 0 173 3,-0.2 -1,-0.1 1,-0.1 5,-0.0 0.958 123.8 15.3 -80.8 -57.8 9.7 -18.1 12.5 49 49 A T S S- 0 0 73 2,-0.4 -2,-0.1 3,-0.0 -1,-0.1 0.146 99.7-122.7-102.5 17.7 7.9 -18.5 9.2 50 50 A Q S S+ 0 0 138 1,-0.1 2,-0.3 -5,-0.1 -3,-0.2 0.784 87.6 78.8 45.9 28.3 10.8 -17.3 7.2 51 51 A Q S S- 0 0 46 1,-0.1 -2,-0.4 -29,-0.0 -5,-0.3 -0.974 97.3 -48.6-156.3 164.6 8.4 -14.7 5.9 52 52 A N - 0 0 3 -31,-0.4 -7,-0.2 -2,-0.3 -31,-0.1 0.083 48.1-127.2 -34.9 143.1 6.7 -11.4 6.9 53 53 A R S S- 0 0 165 2,-0.3 -1,-0.2 -9,-0.1 3,-0.1 0.036 70.9 -69.7 -87.2 28.3 5.2 -11.5 10.4 54 54 A G S S+ 0 0 10 1,-0.3 -38,-0.8 -36,-0.2 -37,-0.6 0.770 112.5 89.2 91.0 29.8 1.9 -10.3 8.9 55 55 A F E +A 15 0A 79 -11,-0.2 2,-0.3 -40,-0.2 -1,-0.3 -0.986 43.8 176.8-157.7 146.7 3.0 -6.8 8.0 56 56 A A E -A 14 0A 6 -42,-1.1 -42,-2.4 -2,-0.3 2,-0.4 -0.982 17.0-143.9-154.0 139.8 4.6 -4.9 5.1 57 57 A F E -AC 13 42A 74 -15,-1.2 -15,-0.8 -2,-0.3 2,-0.4 -0.856 17.4-179.4-108.0 140.9 5.5 -1.2 4.4 58 58 A V E -AC 12 41A 9 -46,-2.4 -46,-2.9 -2,-0.4 2,-0.3 -0.981 6.5-165.9-142.9 128.7 5.3 0.5 1.0 59 59 A Q E -A 11 0A 72 -19,-1.7 -22,-0.3 -2,-0.4 2,-0.2 -0.824 11.3-142.6-112.8 152.2 6.1 4.0 -0.0 60 60 A L - 0 0 5 -50,-1.1 -24,-0.1 -2,-0.3 6,-0.1 -0.665 27.8-109.3-109.5 166.0 5.1 5.8 -3.2 61 61 A S S S+ 0 0 95 -26,-0.3 2,-0.2 -2,-0.2 -1,-0.1 0.862 102.2 15.3 -60.5 -36.9 7.1 8.3 -5.4 62 62 A S S S- 0 0 59 1,-0.1 4,-0.4 -3,-0.0 -2,-0.3 -0.680 79.8-110.3-128.0-178.0 4.7 11.1 -4.2 63 63 A A S >> S+ 0 0 43 -2,-0.2 4,-1.2 2,-0.2 3,-1.1 0.921 114.5 50.1 -81.6 -48.9 2.2 11.8 -1.5 64 64 A M H 3> S+ 0 0 143 1,-0.3 4,-2.9 2,-0.2 5,-0.2 0.878 102.0 64.1 -57.2 -38.9 -0.9 11.8 -3.7 65 65 A D H 3> S+ 0 0 55 1,-0.2 4,-2.4 2,-0.2 -1,-0.3 0.835 98.6 56.6 -54.5 -33.4 0.2 8.5 -5.2 66 66 A A H <> S+ 0 0 1 -3,-1.1 4,-1.5 -4,-0.4 -1,-0.2 0.973 110.4 40.1 -63.5 -56.0 -0.3 7.0 -1.8 67 67 A S H X S+ 0 0 52 -4,-1.2 4,-3.3 1,-0.2 5,-0.3 0.878 113.2 58.2 -60.8 -37.9 -3.9 8.0 -1.4 68 68 A Q H X S+ 0 0 106 -4,-2.9 4,-3.5 1,-0.2 5,-0.3 0.961 107.2 44.3 -56.6 -55.4 -4.5 7.1 -5.0 69 69 A L H X S+ 0 0 9 -4,-2.4 4,-1.5 1,-0.2 -1,-0.2 0.793 117.1 49.2 -60.9 -26.6 -3.4 3.5 -4.6 70 70 A L H X S+ 0 0 4 -4,-1.5 4,-1.3 -5,-0.2 -2,-0.2 0.857 116.9 38.9 -80.5 -36.9 -5.4 3.5 -1.4 71 71 A Q H X S+ 0 0 131 -4,-3.3 4,-0.6 2,-0.2 -2,-0.2 0.763 117.5 51.2 -82.7 -26.6 -8.5 4.9 -3.0 72 72 A I H < S+ 0 0 64 -4,-3.5 4,-0.5 -5,-0.3 -3,-0.2 0.881 115.6 39.9 -76.9 -40.2 -8.0 2.9 -6.2 73 73 A L H < S+ 0 0 14 -4,-1.5 3,-0.4 -5,-0.3 -2,-0.2 0.829 120.1 45.1 -78.0 -33.0 -7.6 -0.4 -4.4 74 74 A Q H < S+ 0 0 117 -4,-1.3 -1,-0.2 1,-0.2 -2,-0.2 0.628 99.5 72.0 -84.4 -13.4 -10.4 0.4 -1.9 75 75 A S S < S+ 0 0 81 -4,-0.6 -1,-0.2 -5,-0.1 -2,-0.2 0.784 79.1 93.1 -70.9 -26.0 -12.6 1.6 -4.7 76 76 A L S S- 0 0 78 -4,-0.5 4,-0.0 -3,-0.4 -3,-0.0 -0.452 80.9-132.5 -69.6 137.6 -13.1 -1.9 -5.8 77 77 A H S S+ 0 0 192 -2,-0.1 -1,-0.1 1,-0.1 0, 0.0 0.960 94.1 59.8 -56.0 -55.9 -16.1 -3.6 -4.4 78 78 A P S S- 0 0 96 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 -0.653 90.9-130.1 -78.4 114.1 -14.3 -6.9 -3.4 79 79 A P - 0 0 96 0, 0.0 2,-0.6 0, 0.0 9,-0.1 0.216 43.6 -68.2 -48.4-176.7 -11.4 -6.0 -0.9 80 80 A L E +D 87 0B 48 7,-1.0 7,-3.8 -4,-0.0 2,-0.4 -0.710 62.9 168.5 -84.5 120.3 -7.9 -7.3 -1.4 81 81 A K E +D 86 0B 143 -2,-0.6 2,-0.3 5,-0.2 5,-0.2 -0.971 6.9 172.8-138.8 123.1 -7.8 -11.1 -1.0 82 82 A I E > -D 85 0B 65 3,-1.2 3,-1.6 -2,-0.4 -64,-0.1 -0.910 56.3 -61.6-126.5 153.3 -5.0 -13.5 -1.9 83 83 A D T 3 S+ 0 0 147 -2,-0.3 -63,-0.1 1,-0.2 -65,-0.1 -0.022 125.9 38.1 -34.5 103.9 -4.5 -17.2 -1.2 84 84 A G T 3 S- 0 0 63 -65,-0.1 2,-0.3 -66,-0.0 -1,-0.2 -0.389 118.2 -43.0 147.5 -62.7 -4.5 -17.1 2.6 85 85 A K E < S-D 82 0B 73 -3,-1.6 -3,-1.2 -69,-0.0 -67,-0.1 -0.976 75.1 -47.0-177.6-178.1 -7.0 -14.6 3.9 86 86 A T E -D 81 0B 81 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.427 49.2-152.1 -71.1 143.2 -8.6 -11.2 3.5 87 87 A I E -D 80 0B 6 -7,-3.8 -7,-1.0 -2,-0.1 2,-0.2 -0.968 10.6-169.3-122.7 133.8 -6.2 -8.2 3.1 88 88 A G E -B 15 0A 33 -73,-1.3 -73,-1.1 -2,-0.4 2,-0.4 -0.620 12.5-134.2-113.5 174.0 -6.8 -4.6 4.1 89 89 A V E +B 14 0A 23 -2,-0.2 2,-0.3 -75,-0.2 -75,-0.2 -0.990 23.2 170.2-133.2 140.3 -5.1 -1.3 3.6 90 90 A D E -B 13 0A 47 -77,-1.9 -77,-2.2 -2,-0.4 3,-0.1 -0.958 32.0-103.4-144.5 161.6 -4.2 1.5 6.0 91 91 A F E -B 12 0A 81 -2,-0.3 2,-0.4 -79,-0.2 -79,-0.2 -0.235 60.9 -65.5 -78.9 172.5 -2.2 4.7 6.1 92 92 A A - 0 0 36 -81,-1.1 2,-0.2 1,-0.0 -1,-0.2 -0.444 61.1-163.7 -62.7 114.8 1.2 5.2 7.8 93 93 A K - 0 0 156 -2,-0.4 2,-0.5 -3,-0.1 -1,-0.0 -0.637 27.6 -94.2-100.4 160.0 0.5 4.7 11.6 94 94 A S 0 0 123 1,-0.3 -1,-0.1 -2,-0.2 -2,-0.0 -0.604 360.0 360.0 -75.9 120.6 2.7 5.6 14.5 95 95 A A 0 0 154 -2,-0.5 -1,-0.3 -3,-0.0 -3,-0.0 0.375 360.0 360.0 65.4 360.0 4.9 2.7 15.5