==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=17-JUN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 15-NOV-11 2LLM . COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.D.NADEZHDIN,O.V.BOCHAROVA,E.V.BOCHAROV,A.S.ARSENIEV . 43 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4277.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 32 74.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 67.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 105 0, 0.0 3,-0.4 0, 0.0 2,-0.1 0.000 360.0 360.0 360.0 77.5 -0.3 30.0 -4.3 2 2 A S + 0 0 107 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.360 360.0 35.5 -86.2 169.0 -0.7 30.1 -8.0 3 3 A Q S S+ 0 0 143 -2,-0.1 4,-0.5 1,-0.1 -1,-0.2 0.805 83.6 116.4 58.0 29.7 1.5 28.4 -10.6 4 4 A K S > S+ 0 0 148 -3,-0.4 4,-1.2 3,-0.1 -2,-0.1 0.705 72.0 45.7 -97.3 -26.5 1.9 25.5 -8.1 5 5 A L H > S+ 0 0 124 2,-0.2 4,-2.0 3,-0.1 5,-0.1 0.923 113.2 46.7 -81.7 -49.6 0.2 22.9 -10.2 6 6 A V H > S+ 0 0 91 2,-0.2 4,-3.2 3,-0.2 5,-0.3 0.942 114.9 47.5 -57.7 -51.0 1.9 23.6 -13.5 7 7 A F H > S+ 0 0 150 -4,-0.5 4,-2.7 1,-0.2 5,-0.3 0.973 115.9 42.0 -54.9 -61.5 5.4 23.8 -12.0 8 8 A F H X>S+ 0 0 126 -4,-1.2 4,-1.7 1,-0.2 5,-0.9 0.797 116.4 54.2 -57.2 -28.9 5.1 20.6 -9.9 9 9 A A H <5S+ 0 0 51 -4,-2.0 -2,-0.2 2,-0.2 -1,-0.2 0.984 110.8 39.8 -69.6 -60.8 3.4 19.0 -13.0 10 10 A E H <5S+ 0 0 164 -4,-3.2 -2,-0.2 1,-0.2 -3,-0.2 0.875 121.6 45.8 -56.7 -39.4 6.2 19.8 -15.6 11 11 A D H <5S- 0 0 99 -4,-2.7 -1,-0.2 -5,-0.3 -2,-0.2 0.837 94.4-150.5 -72.9 -34.0 8.8 18.9 -12.9 12 12 A V T ><5 - 0 0 107 -4,-1.7 3,-0.6 -5,-0.3 4,-0.4 0.880 38.9-100.6 64.2 39.1 6.9 15.8 -11.9 13 13 A G T 3 < - 0 0 20 -5,-0.9 -4,-0.0 1,-0.2 2,-0.0 -0.251 61.6 -62.4 52.3-125.6 8.2 16.0 -8.4 14 14 A S T 3 S- 0 0 104 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 -0.432 90.4 -52.5-159.3 74.6 11.1 13.6 -7.9 15 15 A N S <> S+ 0 0 120 -3,-0.6 4,-1.0 3,-0.1 -2,-0.1 0.780 92.8 138.3 60.9 26.7 10.3 9.9 -8.3 16 16 A K H >> + 0 0 137 -4,-0.4 4,-1.2 1,-0.2 3,-0.9 0.969 65.4 51.5 -66.0 -55.4 7.5 10.5 -5.8 17 17 A G H 3> S+ 0 0 52 1,-0.2 4,-2.6 -5,-0.2 5,-0.2 0.810 100.0 68.0 -52.2 -31.6 4.8 8.4 -7.6 18 18 A A H 3> S+ 0 0 42 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.933 96.3 52.1 -54.3 -50.7 7.4 5.6 -7.7 19 19 A I H