==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-JAN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 18-NOV-11 2LLZ . COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YJDK; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR D.LORD,W.PETI,R.PAGE . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6483.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 66.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 19.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 23.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 121 0, 0.0 2,-2.3 0, 0.0 3,-0.4 0.000 360.0 360.0 360.0 152.1 2.1 2.8 -7.3 2 2 A H + 0 0 177 1,-0.2 4,-0.3 3,-0.0 0, 0.0 -0.497 360.0 142.9 -80.3 74.4 -0.4 1.7 -9.9 3 3 A M + 0 0 164 -2,-2.3 -1,-0.2 2,-0.1 2,-0.1 0.703 59.0 79.6 -76.2 -24.8 1.9 -0.3 -12.1 4 4 A E S S+ 0 0 152 -3,-0.4 2,-1.2 1,-0.2 0, 0.0 -0.412 83.5 36.6 -82.9 156.7 -1.0 -2.6 -12.4 5 5 A G S > S+ 0 0 47 -2,-0.1 3,-0.7 1,-0.1 2,-0.5 -0.514 115.8 57.1 96.6 -58.0 -3.8 -1.8 -14.8 6 6 A K T 3 S+ 0 0 104 -2,-1.2 3,-0.1 -4,-0.3 -2,-0.1 -0.358 75.3 93.8-102.6 47.5 -1.5 -0.4 -17.2 7 7 A N T 3 S+ 0 0 109 -2,-0.5 2,-0.7 1,-0.1 -1,-0.3 0.225 73.5 78.3-107.9 -0.4 0.5 -3.5 -17.4 8 8 A K < - 0 0 132 -3,-0.7 2,-0.7 54,-0.0 -1,-0.1 -0.871 65.7-174.0-114.6 85.7 -1.7 -4.2 -20.4 9 9 A F - 0 0 126 -2,-0.7 53,-0.2 -3,-0.1 52,-0.2 -0.817 14.9-159.2 -84.4 119.1 -0.4 -2.2 -23.3 10 10 A N - 0 0 63 51,-0.7 2,-0.4 -2,-0.7 53,-0.1 0.036 12.1-117.2 -88.8-168.7 -2.9 -2.7 -26.0 11 11 A T + 0 0 62 49,-0.1 80,-1.7 51,-0.1 81,-0.3 -0.965 31.4 176.0-141.7 122.1 -2.5 -2.2 -29.7 12 12 A Y E -AB 59 90A 38 47,-3.0 47,-2.2 -2,-0.4 2,-0.4 -0.811 18.5-144.0-120.3 164.5 -4.4 0.3 -31.8 13 13 A V E -AB 58 89A 0 76,-3.8 76,-2.8 -2,-0.3 2,-0.5 -0.973 10.0-153.5-128.2 139.2 -4.4 1.4 -35.4 14 14 A V E -AB 57 88A 0 43,-2.9 43,-1.6 -2,-0.4 2,-0.7 -0.972 1.1-158.6-120.0 127.8 -5.0 4.9 -36.6 15 15 A S E -AB 56 87A 18 72,-2.9 72,-2.4 -2,-0.5 2,-0.4 -0.921 13.0-157.1-107.0 110.4 -6.4 5.7 -39.9 16 16 A F E - B 0 86A 1 39,-2.0 2,-0.5 -2,-0.7 70,-0.2 -0.729 3.2-160.1 -91.7 139.9 -5.6 9.2 -41.1 17 17 A D E + B 0 85A 108 68,-2.2 68,-2.4 -2,-0.4 38,-0.0 -0.986 32.1 127.9-120.2 130.1 -7.7 11.0 -43.7 18 18 A Y - 0 0 48 -2,-0.5 2,-0.1 66,-0.2 66,-0.1 -0.916 57.3 -97.2-175.0 144.6 -6.3 13.8 -45.5 19 19 A P > - 0 0 67 0, 0.0 3,-2.1 0, 0.0 64,-0.0 -0.459 36.3-116.9 -71.0 151.4 -5.8 14.9 -49.1 20 20 A S G > S+ 0 0 102 1,-0.3 3,-1.8 2,-0.2 4,-0.3 0.675 107.5 77.7 -66.3 -17.2 -2.4 14.3 -50.7 21 21 A S G 3 S+ 0 0 102 1,-0.3 -1,-0.3 2,-0.1 3,-0.3 0.742 94.7 51.2 -63.2 -20.6 -1.8 18.0 -51.1 22 22 A Y G <> S+ 0 0 76 -3,-2.1 4,-2.5 1,-0.2 3,-0.5 0.255 75.7 103.9-102.0 15.2 -1.0 18.0 -47.4 23 23 A S H <> S+ 0 0 42 -3,-1.8 4,-1.6 1,-0.2 -1,-0.2 0.941 79.6 53.6 -62.5 -41.0 1.5 15.2 -47.5 24 24 A S H 4 S+ 0 0 85 -4,-0.3 -1,-0.2 -3,-0.3 4,-0.1 0.775 114.5 43.1 -63.0 -26.2 4.4 17.6 -47.2 25 25 A V H >> S+ 0 0 25 -3,-0.5 3,-1.4 1,-0.2 4,-0.8 0.834 109.2 56.4 -85.3 -36.4 2.8 19.0 -44.1 26 26 A F H 3X S+ 0 0 3 -4,-2.5 4,-2.7 1,-0.3 5,-0.2 0.720 86.2 78.9 -74.8 -19.9 1.9 15.7 -42.8 27 27 A L H 3X S+ 0 0 76 -4,-1.6 4,-1.3 1,-0.2 -1,-0.3 0.764 93.3 53.4 -60.8 -21.6 5.5 14.6 -42.9 28 28 A R H <> S+ 0 0 133 -3,-1.4 4,-1.5 2,-0.2 -1,-0.2 0.969 108.8 46.5 -74.8 -50.2 5.8 16.6 -39.7 29 29 A L H X S+ 0 0 2 -4,-0.8 4,-1.7 1,-0.2 -2,-0.2 0.818 110.5 53.9 -62.5 -33.8 3.0 14.8 -38.0 30 30 A R H X S+ 0 0 79 -4,-2.7 4,-1.7 1,-0.2 -1,-0.2 0.909 106.1 51.9 -70.7 -37.4 4.4 11.4 -39.1 31 31 A S H X S+ 0 0 70 -4,-1.3 4,-0.7 -5,-0.2 -1,-0.2 0.815 107.6 53.8 -67.3 -28.6 7.7 12.3 -37.6 32 32 A L H X S+ 0 0 25 -4,-1.5 4,-1.6 2,-0.2 -1,-0.2 0.876 102.9 58.0 -70.3 -38.9 5.7 13.1 -34.4 33 33 A M H <>S+ 0 0 1 -4,-1.7 5,-1.6 1,-0.3 3,-0.2 0.929 110.2 40.9 -56.0 -50.2 4.1 9.6 -34.5 34 34 A Y H <5S+ 0 0 81 -4,-1.7 -1,-0.3 1,-0.3 -2,-0.2 0.615 109.4 59.1 -79.1 -15.8 7.4 7.8 -34.4 35 35 A D H <5S+ 0 0 129 -4,-0.7 -1,-0.3 -5,-0.2 -2,-0.2 0.777 114.7 43.9 -76.4 -27.7 8.7 10.2 -31.9 36 36 A M T <5S- 0 0 32 -4,-1.6 -3,-0.1 -3,-0.2 23,-0.0 0.061 122.3 -71.3 -92.5-154.3 5.7 9.0 -29.8 37 37 A N T 5S+ 0 0 103 -2,-0.0 23,-0.8 2,-0.0 -3,-0.2 0.410 90.2 117.4 -90.5 0.6 4.7 5.4 -29.4 38 38 A F E < -C 59 0A 7 -5,-1.6 2,-0.3 21,-0.2 21,-0.3 -0.323 45.2-162.1 -68.7 154.1 3.3 4.9 -33.0 39 39 A S E -C 58 0A 54 19,-2.8 19,-1.7 1,-0.1 3,-0.1 -0.863 27.7-137.8-134.4 167.9 4.9 2.3 -35.3 40 40 A S S S+ 0 0 29 -2,-0.3 12,-2.8 17,-0.2 13,-0.6 0.593 89.5 47.5 -98.3 -21.4 5.0 1.4 -39.0 41 41 A I E +D 51 0B 77 10,-0.2 2,-0.3 11,-0.1 10,-0.2 -0.946 56.4 160.6-125.2 145.1 4.7 -2.4 -38.6 42 42 A V E -D 50 0B 22 8,-1.6 8,-3.2 -2,-0.4 2,-0.3 -0.945 41.6-103.0-155.7 148.4 2.3 -4.5 -36.5 43 43 A A E -D 49 0B 52 -2,-0.3 -2,-0.0 6,-0.3 2,-0.0 -0.578 33.4-137.9 -77.4 140.2 1.3 -8.1 -36.8 44 44 A D - 0 0 13 4,-2.2 -1,-0.1 -2,-0.3 48,-0.1 -0.045 38.3 -83.4 -79.7-169.5 -2.0 -9.0 -38.3 45 45 A E S S+ 0 0 123 1,-0.2 -2,-0.1 46,-0.1 -1,-0.1 0.688 131.9 49.7 -74.9 -17.6 -4.4 -11.6 -37.1 46 46 A Y S S- 0 0 99 2,-0.1 -1,-0.2 0, 0.0 -3,-0.1 0.866 124.3-103.6 -85.5 -39.6 -2.5 -14.3 -38.9 47 47 A G S S+ 0 0 45 1,-0.3 -2,-0.1 -5,-0.1 -4,-0.1 0.476 72.1 139.7 126.7 16.9 0.7 -13.1 -37.4 48 48 A I - 0 0 84 1,-0.0 -4,-2.2 -6,-0.0 2,-0.9 -0.757 57.0-120.9 -94.9 128.6 2.3 -11.3 -40.3 49 49 A P E -D 43 0B 90 0, 0.0 -6,-0.3 0, 0.0 2,-0.3 -0.580 39.9-163.7 -65.8 101.6 4.2 -8.0 -39.6 50 50 A R E -D 42 0B 58 -8,-3.2 -8,-1.6 -2,-0.9 2,-0.4 -0.650 16.9-125.1 -90.9 148.0 2.3 -5.7 -41.8 51 51 A Q E -D 41 0B 109 -2,-0.3 -10,-0.2 -10,-0.2 5,-0.1 -0.730 17.0-170.8 -88.7 141.3 3.4 -2.3 -42.9 52 52 A L >> + 0 0 0 -12,-2.8 2,-3.3 -2,-0.4 3,-1.4 0.611 50.1 115.6-104.9 -17.1 0.9 0.4 -42.1 53 53 A N T 34 + 0 0 61 -13,-0.6 4,-0.1 1,-0.3 -1,-0.1 -0.217 59.7 72.4 -65.0 57.6 2.7 3.1 -44.1 54 54 A E T 34 S- 0 0 143 -2,-3.3 -1,-0.3 2,-0.5 -2,-0.1 0.424 127.7 -41.6-122.1 -55.2 -0.0 3.6 -46.6 55 55 A N T <4 S+ 0 0 64 -3,-1.4 -39,-2.0 1,-0.2 2,-0.2 0.411 118.7 60.3-156.8 -33.4 -2.6 5.4 -44.6 56 56 A S E < -A 15 0A 0 -4,-1.1 -2,-0.5 -41,-0.2 2,-0.3 -0.609 53.6-170.2-108.8 167.9 -2.9 3.8 -41.1 57 57 A F E -A 14 0A 4 -43,-1.6 -43,-2.9 -2,-0.2 2,-0.3 -0.922 14.0-129.9-147.1 170.3 -0.4 3.4 -38.3 58 58 A A E -AC 13 39A 2 -19,-1.7 -19,-2.8 -2,-0.3 2,-0.3 -0.831 13.8-169.1-127.7 163.8 -0.3 1.4 -35.0 59 59 A I E -AC 12 38A 4 -47,-2.2 -47,-3.0 -2,-0.3 -21,-0.2 -0.981 25.3-140.0-153.9 142.3 0.5 2.1 -31.4 60 60 A T + 0 0 64 -23,-0.8 -49,-0.1 -2,-0.3 -22,-0.1 0.031 60.3 132.4 -90.5 30.1 1.0 -0.0 -28.3 61 61 A T - 0 0 18 -52,-0.2 -51,-0.7 1,-0.1 -2,-0.1 -0.216 48.6-156.8 -80.7 168.9 -0.9 2.4 -26.1 62 62 A S + 0 0 22 -53,-0.2 -1,-0.1 2,-0.1 3,-0.1 0.212 61.0 104.5-127.9 6.8 -3.6 1.5 -23.6 63 63 A L S S- 0 0 40 1,-0.2 2,-0.1 -53,-0.1 -53,-0.1 -0.246 80.5 -81.0 -77.9 178.6 -5.4 4.8 -23.4 64 64 A A >> - 0 0 52 1,-0.1 4,-2.3 -2,-0.1 3,-0.9 -0.361 35.2-107.3 -86.3 167.3 -8.6 5.4 -25.1 65 65 A A H 3> S+ 0 0 33 1,-0.3 4,-2.2 2,-0.2 5,-0.1 0.915 121.0 45.6 -56.5 -47.6 -9.3 6.1 -28.8 66 66 A S H 3> S+ 0 0 78 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.653 109.0 58.2 -76.0 -9.6 -10.2 9.7 -28.2 67 67 A E H <> S+ 0 0 106 -3,-0.9 4,-2.4 2,-0.2 -1,-0.2 0.896 104.8 49.0 -83.2 -41.6 -7.2 10.0 -26.0 68 68 A I H X S+ 0 0 0 -4,-2.3 4,-2.4 1,-0.2 -2,-0.2 0.929 110.7 53.4 -58.4 -44.7 -4.9 8.9 -28.9 69 69 A E H X S+ 0 0 52 -4,-2.2 4,-3.1 1,-0.2 5,-0.2 0.931 108.1 47.8 -53.6 -49.7 -6.7 11.5 -30.9 70 70 A D H X S+ 0 0 103 -4,-1.7 4,-1.9 1,-0.2 -1,-0.2 0.900 109.9 54.1 -63.4 -39.9 -6.1 14.3 -28.4 71 71 A L H X S+ 0 0 56 -4,-2.4 4,-0.6 1,-0.2 -1,-0.2 0.937 114.8 39.5 -55.8 -50.3 -2.4 13.3 -28.2 72 72 A I H >< S+ 0 0 0 -4,-2.4 3,-1.1 1,-0.2 4,-0.4 0.919 113.6 53.1 -70.4 -43.4 -2.0 13.5 -32.0 73 73 A R H >< S+ 0 0 109 -4,-3.1 3,-0.6 1,-0.3 -1,-0.2 0.767 105.0 54.6 -71.4 -21.7 -4.1 16.6 -32.4 74 74 A L H >< S+ 0 0 80 -4,-1.9 3,-0.7 -5,-0.2 -1,-0.3 0.683 102.4 59.1 -82.5 -14.0 -2.1 18.5 -29.8 75 75 A K G XX S+ 0 0 56 -3,-1.1 3,-1.4 -4,-0.6 4,-0.8 0.522 84.1 81.1 -87.0 -3.9 1.0 17.7 -31.8 76 76 A C G <4 S+ 0 0 27 -3,-0.6 -1,-0.2 -4,-0.4 -2,-0.2 0.604 74.9 74.7 -75.1 -10.4 -0.6 19.5 -34.7 77 77 A L G <4 S+ 0 0 151 -3,-0.7 -1,-0.3 1,-0.2 -2,-0.1 0.632 92.7 54.9 -75.0 -14.6 0.6 22.6 -33.0 78 78 A D T <4 S+ 0 0 98 -3,-1.4 -2,-0.2 -4,-0.0 -1,-0.2 0.905 101.6 63.8 -81.4 -47.5 4.1 21.6 -34.3 79 79 A L S < S- 0 0 7 -4,-0.8 3,-0.1 1,-0.1 -53,-0.1 -0.264 89.9-117.6 -75.7 160.6 3.1 21.4 -37.9 80 80 A P S S- 0 0 101 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.994 73.6 -48.7 -61.0 -76.3 1.8 24.4 -40.0 81 81 A D + 0 0 109 -59,-0.1 2,-0.3 -3,-0.0 -56,-0.1 -0.919 57.2 163.1-167.2 137.4 -1.7 23.3 -40.8 82 82 A I - 0 0 6 -2,-0.3 2,-1.4 -3,-0.1 -3,-0.0 -0.899 33.5-134.6-158.3 123.2 -3.5 20.3 -42.2 83 83 A D + 0 0 117 -2,-0.3 2,-0.3 -64,-0.0 -61,-0.1 -0.725 45.8 161.6 -77.4 92.9 -7.2 19.3 -42.1 84 84 A F - 0 0 4 -2,-1.4 2,-0.4 -66,-0.1 -66,-0.2 -0.853 26.8-161.7-113.3 156.4 -6.8 15.8 -41.2 85 85 A D E -B 17 0A 98 -68,-2.4 -68,-2.2 -2,-0.3 2,-0.3 -0.990 13.1-164.3-137.1 122.8 -9.4 13.5 -39.7 86 86 A L E -B 16 0A 8 -2,-0.4 2,-0.5 -70,-0.2 -70,-0.2 -0.840 12.2-156.2-114.9 152.3 -8.3 10.3 -38.0 87 87 A N E -B 15 0A 87 -72,-2.4 -72,-2.9 -2,-0.3 2,-0.4 -0.984 12.2-153.7-123.3 115.5 -10.1 7.2 -36.9 88 88 A I E +B 14 0A 15 -2,-0.5 2,-0.3 -74,-0.2 -74,-0.2 -0.713 25.9 157.5 -84.4 139.5 -8.7 5.2 -34.1 89 89 A M E -B 13 0A 17 -76,-2.8 -76,-3.8 -2,-0.4 2,-0.2 -0.942 45.1 -92.3-149.5 163.1 -9.5 1.6 -34.1 90 90 A T E > -B 12 0A 47 -2,-0.3 4,-1.0 -78,-0.3 3,-0.3 -0.530 38.6-112.6 -75.0 153.4 -7.9 -1.5 -32.6 91 91 A V H >> S+ 0 0 9 -80,-1.7 4,-2.4 1,-0.2 3,-0.5 0.877 119.8 53.6 -52.2 -39.8 -5.4 -3.4 -34.7 92 92 A D H 3> S+ 0 0 103 -81,-0.3 4,-1.3 1,-0.3 -1,-0.2 0.901 106.5 52.6 -63.8 -37.1 -7.9 -6.3 -34.9 93 93 A D H 34 S+ 0 0 62 -3,-0.3 -1,-0.3 1,-0.2 -2,-0.2 0.677 110.5 50.8 -72.8 -19.0 -10.5 -4.0 -36.1 94 94 A Y H XX S+ 0 0 4 -4,-1.0 3,-2.3 -3,-0.5 4,-1.4 0.957 108.8 43.8 -83.2 -58.0 -8.2 -2.9 -38.7 95 95 A F H 3< S+ 0 0 10 -4,-2.4 -2,-0.2 1,-0.3 -3,-0.1 0.680 100.2 71.2 -66.8 -19.1 -7.0 -6.1 -40.3 96 96 A R T 3< S+ 0 0 149 -4,-1.3 -1,-0.3 -5,-0.3 -2,-0.1 0.655 106.0 40.6 -68.7 -15.4 -10.5 -7.4 -40.3 97 97 A Q T <4 S+ 0 0 90 -3,-2.3 2,-0.6 1,-0.2 -2,-0.2 0.799 117.2 49.2 -95.5 -42.6 -11.1 -4.9 -43.1 98 98 A F S < S- 0 0 95 -4,-1.4 -1,-0.2 1,-0.0 -4,-0.0 -0.894 81.2-164.8-107.8 114.5 -7.8 -5.4 -45.0 99 99 A Y 0 0 163 -2,-0.6 -3,-0.1 1,-0.2 -2,-0.1 -0.003 360.0 360.0 -92.1-172.3 -7.0 -8.9 -45.6 100 100 A K 0 0 194 -5,-0.0 -1,-0.2 -56,-0.0 -5,-0.0 -0.174 360.0 360.0 -39.3 360.0 -4.0 -11.1 -46.6