==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 02-MAY-02 1LMS . COMPND 2 MOLECULE: CYTOCHROME C, ISO-1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR M.ASSFALG,I.BERTINI,A.DOLFI,P.TURANO,A.G.MAUK,F.I.ROSELL, . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7167.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 48.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 21.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 9 A L >> 0 0 85 0, 0.0 4,-3.1 0, 0.0 3,-2.9 0.000 360.0 360.0 360.0 -83.2 2.6 -5.8 11.3 2 10 A F H 3> + 0 0 32 1,-0.3 4,-1.4 2,-0.2 8,-0.1 0.863 360.0 74.9 -43.6 -47.4 0.8 -2.9 9.5 3 11 A K H 34 S+ 0 0 167 1,-0.2 -1,-0.3 2,-0.1 4,-0.1 0.615 121.6 5.6 -26.1 -41.7 0.5 -1.3 13.1 4 12 A T H <4 S+ 0 0 96 -3,-2.9 3,-0.3 3,-0.1 4,-0.3 0.612 127.4 61.0-127.4 -34.7 4.2 -0.4 12.9 5 13 A R H < S- 0 0 87 -4,-3.1 -3,-0.2 1,-0.2 -2,-0.1 0.979 130.3 -2.6 -49.3 -65.5 5.4 -1.3 9.4 6 14 A C S < S+ 0 0 29 -4,-1.4 -1,-0.2 -5,-0.2 -3,-0.1 -0.452 101.8 99.9-144.9 51.2 3.1 1.0 7.5 7 15 A L + 0 0 82 -3,-0.3 14,-0.2 -6,-0.1 -4,-0.1 0.673 64.8 78.8-103.6 -37.8 0.8 2.8 9.9 8 16 A Q S S+ 0 0 117 -4,-0.3 12,-0.1 1,-0.2 13,-0.1 0.863 117.7 8.8 -45.5 -54.9 2.7 6.1 10.1 9 17 A C S S+ 0 0 67 11,-0.2 12,-1.4 10,-0.1 11,-0.2 0.914 122.4 64.9 -83.2 -69.5 1.2 7.3 6.8 10 18 A H - 0 0 35 10,-0.2 2,-0.2 1,-0.1 13,-0.2 0.111 53.7-165.9 -54.3 164.9 -1.4 4.8 5.9 11 19 A T - 0 0 40 11,-0.2 13,-1.3 1,-0.1 14,-0.3 -0.789 15.5-160.7-131.7-167.4 -4.6 3.7 7.3 12 20 A V S S+ 0 0 64 1,-0.5 2,-0.2 11,-0.3 13,-0.1 0.483 75.2 5.8-136.4 -34.8 -7.0 0.8 6.7 13 21 A E S S+ 0 0 109 1,-0.2 -1,-0.5 11,-0.0 3,-0.4 -0.766 89.7 38.3-129.3 175.5 -10.3 2.1 8.1 14 22 A K S S- 0 0 169 -2,-0.2 2,-2.8 1,-0.2 -1,-0.2 0.945 94.6 -12.9 70.1 114.7 -12.0 5.1 9.6 15 23 A G - 0 0 76 1,-0.2 -1,-0.2 2,-0.1 0, 0.0 -0.288 52.9-161.1 74.0 -62.1 -12.2 8.9 9.1 16 24 A G + 0 0 37 -2,-2.8 -1,-0.2 -3,-0.4 -2,-0.1 0.848 34.3 156.7 39.8 45.8 -9.2 9.4 6.9 17 25 A P + 0 0 116 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 0.774 44.4 13.8 -60.7 -36.6 -9.4 13.0 8.0 18 26 A H S S- 0 0 142 3,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.395 91.2 -25.6-128.4-178.7 -6.0 14.3 7.5 19 27 A K S S+ 0 0 162 -2,-0.1 -10,-0.1 3,-0.0 0, 0.0 0.355 84.6 57.6 27.1 -86.4 -2.5 14.3 6.2 20 28 A V S S- 0 0 76 1,-0.3 -10,-0.2 -11,-0.2 -11,-0.2 0.882 94.0 -31.4-101.2-124.0 -1.1 11.2 5.5 21 29 A G - 0 0 10 -12,-1.4 -1,-0.3 -14,-0.2 3,-0.1 -0.902 63.7-138.0 -88.1 119.0 -1.3 7.9 3.5 22 30 A P - 0 0 28 0, 0.0 -11,-0.2 0, 0.0 -13,-0.0 -0.348 36.2 -75.9 -75.4 165.4 -5.0 7.3 3.1 23 31 A N - 0 0 34 -13,-0.2 -11,-0.3 1,-0.1 14,-0.2 -0.311 26.3-148.8 -71.8 147.7 -6.2 3.9 3.6 24 32 A L + 0 0 49 -13,-1.3 2,-1.1 1,-0.1 -12,-0.1 0.850 22.2 178.9 -81.9 -36.5 -5.7 1.1 1.0 25 33 A H + 0 0 93 -14,-0.3 2,-0.1 -13,-0.1 -1,-0.1 0.174 68.7 9.9 61.6 -19.6 -9.0 -0.7 1.9 26 34 A G - 0 0 4 -2,-1.1 65,-0.0 68,-0.1 61,-0.0 -0.455 49.6-175.8 165.9 110.4 -8.4 -3.4 -0.9 27 35 A I + 0 0 13 -2,-0.1 2,-0.4 60,-0.1 -2,-0.1 -0.209 63.1 97.5-111.4 35.9 -5.4 -4.2 -3.1 28 36 A F S S- 0 0 46 1,-0.1 24,-0.3 24,-0.1 -1,-0.1 -0.803 105.2 -4.7-135.9 80.6 -7.1 -7.0 -5.1 29 37 A G S S+ 0 0 39 22,-2.5 2,-0.3 -2,-0.4 23,-0.2 0.769 98.2 144.5 87.7 38.0 -8.4 -5.5 -8.4 30 38 A R E -A 51 0A 58 21,-2.4 21,-3.3 19,-0.0 2,-0.5 -0.695 42.7-145.8 -94.2 156.2 -7.3 -1.9 -7.4 31 39 A H E -A 50 0A 90 1,-0.3 19,-0.2 -2,-0.3 18,-0.2 -0.978 59.2 -47.6-124.3 114.0 -6.0 0.6 -10.0 32 40 A S S S- 0 0 2 17,-2.9 2,-1.4 -2,-0.5 -1,-0.3 0.197 104.3 -30.1 56.0-178.2 -3.4 2.9 -8.5 33 41 A G S S+ 0 0 15 -3,-0.1 2,-0.4 7,-0.0 7,-0.2 -0.647 85.6 161.9 -57.8 91.1 -3.6 4.7 -5.3 34 42 A Q + 0 0 102 -2,-1.4 2,-0.3 -10,-0.1 -3,-0.1 -0.878 13.1 98.6-131.5 109.5 -7.4 5.0 -5.5 35 43 A A S S- 0 0 22 -2,-0.4 -11,-0.1 2,-0.1 -10,-0.0 -0.874 91.0 -58.6-150.2-169.3 -9.6 5.8 -2.5 36 44 A E S S+ 0 0 206 -2,-0.3 2,-0.1 -13,-0.1 -2,-0.0 0.301 99.8 115.3 -63.8 9.4 -11.3 8.8 -0.9 37 45 A G - 0 0 21 -14,-0.2 -2,-0.1 1,-0.1 -16,-0.0 -0.350 56.5-160.0 -55.2 163.7 -7.8 10.2 -0.7 38 46 A Y + 0 0 179 -2,-0.1 3,-0.4 -4,-0.1 -1,-0.1 0.470 67.2 96.7-108.7 -9.7 -7.5 13.3 -2.9 39 47 A S + 0 0 55 1,-0.3 -5,-0.1 2,-0.1 -3,-0.0 0.510 46.3 82.1 -99.5 -20.3 -3.9 13.0 -3.0 40 48 A Y > + 0 0 41 1,-0.2 2,-1.7 -7,-0.2 3,-1.3 0.248 59.2 144.3 -58.6 7.7 -2.9 11.2 -6.2 41 49 A T T 3 + 0 0 78 -3,-0.4 -1,-0.2 1,-0.2 -2,-0.1 0.128 69.4 21.6 -37.9 10.7 -3.3 14.8 -7.7 42 50 A D T 3 S- 0 0 154 -2,-1.7 -1,-0.2 -3,-0.0 2,-0.1 0.169 125.4 -6.0-179.0 44.5 -0.3 14.5 -10.2 43 51 A A S X> S+ 0 0 65 -3,-1.3 3,-1.8 0, 0.0 4,-1.7 -0.493 102.4 57.5 179.7 -96.5 0.8 10.9 -11.2 44 52 A N H 3>>S+ 0 0 42 1,-0.3 4,-2.3 2,-0.2 5,-0.9 0.715 107.3 51.0 -39.1 -47.3 -0.2 7.4 -10.0 45 53 A I H 345S+ 0 0 71 -5,-0.5 -1,-0.3 2,-0.2 -4,-0.1 0.860 110.8 49.3 -61.3 -39.1 -3.9 7.6 -10.8 46 54 A K H <45S+ 0 0 191 -3,-1.8 -2,-0.2 -6,-0.3 -1,-0.2 0.866 112.0 48.6 -67.9 -39.1 -3.2 8.8 -14.4 47 55 A K H <5S- 0 0 153 -4,-1.7 -2,-0.2 2,-0.1 -1,-0.2 0.854 96.8-154.6 -65.0 -39.5 -0.8 5.9 -14.7 48 56 A N T <5 - 0 0 94 -4,-2.3 2,-0.5 -5,-0.2 -3,-0.2 0.883 9.8-157.5 66.9 45.1 -3.6 3.7 -13.3 49 57 A V < - 0 0 16 -5,-0.9 -17,-2.9 -18,-0.2 -1,-0.2 -0.335 14.1-126.3 -66.2 107.3 -1.2 1.0 -12.0 50 58 A L E -A 31 0A 68 -2,-0.5 2,-0.5 -19,-0.2 -19,-0.2 -0.309 19.3-163.4 -59.6 130.0 -3.1 -2.3 -11.7 51 59 A W E +A 30 0A 27 -21,-3.3 -22,-2.5 -19,-0.1 -21,-2.4 -0.863 59.1 90.5-119.2 87.9 -3.0 -4.0 -8.2 52 60 A D S S+ 0 0 97 -2,-0.5 2,-0.2 -24,-0.3 -24,-0.1 -0.428 75.5 65.1-176.6 82.2 -4.2 -7.7 -8.6 53 61 A E S S- 0 0 80 1,-0.1 -2,-0.1 -2,-0.1 14,-0.0 -0.546 82.4 -78.0-169.8-153.3 -1.0 -9.6 -9.3 54 62 A N S >> S+ 0 0 116 -2,-0.2 4,-1.4 3,-0.1 3,-0.8 0.465 108.3 59.3-149.0 -57.0 2.4 -11.2 -8.9 55 63 A N H 3> S+ 0 0 87 1,-0.3 4,-3.2 2,-0.2 5,-0.2 0.911 105.0 56.8 -54.5 -40.5 4.9 -8.3 -9.3 56 64 A M H 3> S+ 0 0 14 2,-0.2 4,-3.1 1,-0.2 5,-0.5 0.804 96.6 63.0 -55.0 -36.5 3.0 -6.7 -6.3 57 65 A S H <> S+ 0 0 42 -3,-0.8 4,-2.3 2,-0.2 -2,-0.2 0.986 113.0 34.4 -58.0 -53.6 3.8 -9.9 -4.3 58 66 A E H X S+ 0 0 141 -4,-1.4 4,-2.7 2,-0.2 -2,-0.2 0.954 119.6 50.6 -59.5 -54.1 7.5 -9.0 -4.7 59 67 A Y H <>S+ 0 0 64 -4,-3.2 6,-1.9 1,-0.3 5,-0.7 0.842 119.4 35.9 -61.0 -40.2 7.1 -5.2 -4.6 60 68 A L H <5S+ 0 0 32 -4,-3.1 -1,-0.3 4,-0.2 23,-0.2 0.814 111.1 62.4 -76.4 -39.2 5.0 -5.3 -1.4 61 69 A T H <5S+ 0 0 44 -4,-2.3 22,-0.4 -5,-0.5 21,-0.3 0.939 104.6 56.7 -51.3 -48.7 7.0 -8.2 0.1 62 70 A N T ><5S- 0 0 95 -4,-2.7 2,-2.6 -5,-0.1 3,-1.0 -0.514 107.1-102.6 -77.3 153.8 10.0 -5.9 0.0 63 71 A P T 3 5S+ 0 0 20 0, 0.0 12,-0.5 0, 0.0 11,-0.4 -0.462 103.7 88.9 -69.2 71.5 10.1 -2.6 1.8 64 72 A A T 3 < - 0 0 13 -2,-2.6 -4,-0.2 -5,-0.7 -5,-0.1 0.524 65.6-163.3-141.6 -40.1 9.5 -0.9 -1.6 65 73 A K < + 0 0 93 -6,-1.9 -5,-0.2 -3,-1.0 7,-0.1 0.896 44.0 116.8 46.3 68.5 5.7 -0.7 -2.1 66 74 A Y > - 0 0 112 -11,-0.1 3,-1.4 5,-0.1 4,-0.4 -0.449 39.0-178.9-169.1 90.4 5.5 -0.1 -5.9 67 75 A I T 3 S+ 0 0 25 1,-0.2 -1,-0.1 2,-0.1 -17,-0.1 0.817 82.3 76.4 -43.7 -35.5 4.0 -2.2 -8.7 68 76 A P T 3 S- 0 0 52 0, 0.0 -1,-0.2 0, 0.0 -18,-0.0 0.324 116.3 -88.7 -81.8 14.4 5.2 0.5 -11.2 69 77 A G S < S+ 0 0 45 -3,-1.4 2,-0.3 1,-0.2 -2,-0.1 0.428 79.1 81.5 132.3 -7.9 8.9 -0.4 -11.3 70 78 A T - 0 0 79 -4,-0.4 -1,-0.2 -6,-0.1 0, 0.0 -0.905 48.5 -3.5-149.9 148.3 11.0 1.3 -8.6 71 79 A A - 0 0 68 -2,-0.3 -5,-0.1 1,-0.1 -6,-0.1 0.091 24.4-140.2 67.2-164.7 12.7 2.2 -5.4 72 80 A M > + 0 0 128 -7,-0.1 3,-1.8 -8,-0.1 2,-1.4 0.485 48.3 119.1-172.5 -61.7 13.1 1.6 -1.8 73 81 A A T 3 + 0 0 84 1,-0.3 -9,-0.1 2,-0.2 -2,-0.0 0.206 42.8 110.1 -72.7 29.1 13.5 4.2 1.0 74 82 A F T 3 S- 0 0 72 -2,-1.4 -1,-0.3 -11,-0.4 -10,-0.1 0.845 98.7-133.0 -56.6 -27.1 10.4 3.2 3.0 75 83 A G < - 0 0 47 -3,-1.8 -2,-0.2 -12,-0.5 3,-0.1 0.631 39.6 -13.4 114.5 31.6 13.7 2.6 4.3 76 84 A G S S+ 0 0 53 1,-0.4 2,-0.2 -4,-0.3 -1,-0.1 0.651 74.0 124.8 109.0 27.1 15.6 -0.3 5.9 77 85 A L + 0 0 32 -14,-0.1 -1,-0.4 1,-0.0 -2,-0.1 -0.295 36.1 173.6 -62.6 175.7 13.1 -2.7 6.9 78 86 A K + 0 0 137 -2,-0.2 2,-0.1 -3,-0.1 -1,-0.0 0.529 21.0 109.7-155.5 -43.9 14.4 -5.7 5.1 79 87 A K > - 0 0 114 -17,-0.1 3,-0.6 0, 0.0 -2,-0.0 -0.359 59.9 -69.2-123.4 163.6 12.8 -8.8 5.7 80 88 A E T 3 S- 0 0 143 1,-0.2 4,-0.0 -2,-0.1 -19,-0.0 0.273 90.7 -29.0 35.8-100.2 10.9 -12.0 5.7 81 89 A K T 3> S+ 0 0 126 2,-0.1 4,-0.8 3,-0.0 -1,-0.2 -0.129 71.9 128.4-172.9 38.4 7.2 -11.7 5.5 82 90 A D H <> S+ 0 0 16 -3,-0.6 4,-2.2 -21,-0.3 -80,-0.2 0.922 83.6 55.6 -79.2 -46.8 5.4 -8.7 7.0 83 91 A R H > S+ 0 0 31 -22,-0.4 4,-3.3 -23,-0.2 5,-0.4 0.848 98.0 65.1 -45.1 -44.8 3.4 -8.0 3.9 84 92 A N H > S+ 0 0 74 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.959 108.6 36.9 -51.1 -59.0 2.1 -11.6 3.9 85 93 A D H X S+ 0 0 72 -4,-0.8 4,-2.9 2,-0.2 -1,-0.2 0.898 117.2 53.8 -57.5 -46.9 0.1 -11.1 7.1 86 94 A L H X S+ 0 0 27 -4,-2.2 4,-2.9 2,-0.2 -2,-0.2 0.967 111.2 43.4 -53.3 -58.8 -0.8 -7.5 6.1 87 95 A I H X S+ 0 0 23 -4,-3.3 4,-3.0 1,-0.2 -2,-0.2 0.889 112.6 55.7 -57.1 -38.8 -2.3 -8.6 2.7 88 96 A T H X S+ 0 0 78 -4,-2.5 4,-2.7 -5,-0.4 -2,-0.2 0.951 108.8 46.7 -52.2 -51.9 -4.0 -11.5 4.7 89 97 A Y H X S+ 0 0 180 -4,-2.9 4,-2.5 2,-0.2 -2,-0.2 0.933 112.2 49.4 -58.4 -49.1 -5.6 -8.9 7.0 90 98 A L H X S+ 0 0 5 -4,-2.9 4,-3.3 2,-0.2 5,-0.5 0.919 108.6 54.3 -57.5 -43.8 -6.7 -6.8 4.0 91 99 A K H X S+ 0 0 79 -4,-3.0 4,-2.3 1,-0.2 -2,-0.2 0.976 111.7 44.0 -51.2 -57.4 -8.1 -10.0 2.4 92 100 A K H < S+ 0 0 181 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.824 119.4 43.3 -55.6 -39.1 -10.2 -10.6 5.6 93 101 A A H < S+ 0 0 71 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.873 129.0 25.1 -71.4 -43.5 -11.2 -6.9 5.7 94 102 A T H < 0 0 48 -4,-3.3 -3,-0.2 -5,-0.2 -2,-0.2 0.892 360.0 360.0 -88.7 -58.2 -11.9 -6.5 1.9 95 103 A E < 0 0 173 -4,-2.3 -3,-0.2 -5,-0.5 -4,-0.1 0.327 360.0 360.0 -80.6 360.0 -12.8 -9.9 0.5