==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-OCT-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 23-NOV-11 2LM7 . COMPND 2 MOLECULE: OUTER CAPSID GLYCOPROTEIN VP7; . SOURCE 2 ORGANISM_SCIENTIFIC: ROTAVIRUS A; . AUTHOR S.ELAID,S.LIBERSOU,M.OULDALI,N.MORELLET,J.LEPAULT,S.BOUAZIZ . 61 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6579.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 70.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 57.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 266 A S >> 0 0 116 0, 0.0 5,-1.7 0, 0.0 4,-0.9 0.000 360.0 360.0 360.0 123.0 24.5 -12.9 -2.8 2 267 A D T 45 - 0 0 139 3,-0.2 2,-2.2 2,-0.2 4,-0.1 0.052 360.0 -35.4 64.7-178.6 26.3 -10.2 -0.7 3 268 A V T 45S- 0 0 136 1,-0.2 -1,-0.1 2,-0.1 0, 0.0 -0.508 117.9 -50.1 -77.0 78.2 27.3 -10.7 2.9 4 269 A L T 45S+ 0 0 137 -2,-2.2 3,-0.3 2,-0.2 -1,-0.2 0.815 103.6 130.8 60.0 33.4 24.3 -12.7 4.0 5 270 A D T <5S+ 0 0 109 -4,-0.9 2,-0.7 1,-0.3 -3,-0.2 0.915 76.0 33.9 -77.5 -47.3 22.0 -10.1 2.4 6 271 A I S - 0 0 121 -2,-2.3 4,-1.3 1,-0.1 3,-0.2 -0.776 59.5-135.1-106.1 146.0 1.6 -22.4 -3.4 16 281 A T H > S+ 0 0 90 -2,-0.3 4,-3.0 1,-0.2 5,-0.2 0.741 97.5 74.0 -69.1 -23.2 -1.4 -20.2 -4.1 17 282 A E H > S+ 0 0 107 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.967 102.2 35.9 -53.9 -62.0 -1.6 -19.2 -0.4 18 283 A R H > S+ 0 0 130 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.885 117.9 53.2 -62.3 -39.8 1.5 -16.9 -0.4 19 284 A M H X S+ 0 0 100 -4,-1.3 4,-2.0 1,-0.2 -1,-0.2 0.900 109.1 48.2 -63.8 -41.1 0.6 -15.6 -3.9 20 285 A M H X S+ 0 0 101 -4,-3.0 4,-1.8 1,-0.2 -1,-0.2 0.791 107.5 57.2 -71.2 -27.0 -2.9 -14.7 -2.8 21 286 A R H X S+ 0 0 131 -4,-1.6 4,-2.6 -5,-0.2 -1,-0.2 0.870 105.6 49.7 -69.4 -36.9 -1.5 -13.0 0.2 22 287 A I H X S+ 0 0 103 -4,-1.8 4,-1.9 2,-0.2 -2,-0.2 0.916 110.7 50.0 -65.7 -41.3 0.6 -10.8 -2.1 23 288 A N H X S+ 0 0 83 -4,-2.0 4,-1.3 1,-0.2 -2,-0.2 0.865 113.2 46.7 -61.0 -36.6 -2.5 -10.1 -4.1 24 289 A W H X S+ 0 0 111 -4,-1.8 4,-2.7 1,-0.2 -2,-0.2 0.861 110.2 52.2 -75.5 -35.7 -4.2 -9.2 -0.8 25 290 A K H X S+ 0 0 102 -4,-2.6 4,-2.5 2,-0.2 -2,-0.2 0.794 103.4 59.4 -69.7 -29.4 -1.3 -7.1 0.4 26 291 A K H X S+ 0 0 139 -4,-1.9 4,-1.6 2,-0.2 -1,-0.2 0.925 112.5 38.0 -64.0 -44.3 -1.5 -5.2 -2.9 27 292 A W H X S+ 0 0 167 -4,-1.3 4,-2.0 2,-0.2 -2,-0.2 0.909 116.7 52.6 -69.8 -42.0 -5.0 -4.2 -2.1 28 293 A W H X S+ 0 0 115 -4,-2.7 4,-1.1 1,-0.2 -2,-0.2 0.841 109.5 49.1 -64.4 -34.6 -4.2 -3.7 1.6 29 294 A Q H X S+ 0 0 116 -4,-2.5 4,-0.8 2,-0.2 3,-0.2 0.913 114.1 43.4 -74.1 -41.1 -1.2 -1.4 0.7 30 295 A V H X S+ 0 0 63 -4,-1.6 4,-2.7 1,-0.2 5,-0.2 0.778 105.7 65.1 -75.8 -23.5 -3.2 0.8 -1.6 31 296 A F H X S+ 0 0 102 -4,-2.0 4,-0.8 1,-0.2 -1,-0.2 0.875 109.2 38.0 -64.1 -37.6 -6.1 0.8 0.8 32 297 A Y H X S+ 0 0 133 -4,-1.1 4,-2.0 -3,-0.2 -1,-0.2 0.618 112.4 60.6 -87.0 -13.3 -3.9 2.6 3.3 33 298 A T H X S+ 0 0 81 -4,-0.8 4,-2.6 2,-0.2 -2,-0.2 0.879 101.5 50.8 -77.6 -39.5 -2.4 4.6 0.4 34 299 A V H X S+ 0 0 86 -4,-2.7 4,-1.6 2,-0.2 -2,-0.2 0.849 113.0 48.0 -65.7 -32.8 -5.8 6.1 -0.5 35 300 A V H X S+ 0 0 79 -4,-0.8 4,-2.8 -5,-0.2 -2,-0.2 0.934 111.2 48.8 -68.9 -47.6 -6.1 7.1 3.1 36 301 A D H X S+ 0 0 87 -4,-2.0 4,-2.3 1,-0.2 -2,-0.2 0.848 106.7 58.5 -61.2 -35.2 -2.6 8.6 3.2 37 302 A Y H X S+ 0 0 147 -4,-2.6 4,-1.4 2,-0.2 -1,-0.2 0.945 110.6 40.6 -58.8 -50.0 -3.5 10.5 0.0 38 303 A V H X S+ 0 0 78 -4,-1.6 4,-1.5 1,-0.2 -2,-0.2 0.896 112.6 56.1 -65.9 -39.8 -6.4 12.2 1.8 39 304 A N H X S+ 0 0 76 -4,-2.8 4,-1.4 1,-0.2 -1,-0.2 0.858 104.3 54.3 -58.6 -36.3 -4.3 12.6 4.9 40 305 A Q H X S+ 0 0 107 -4,-2.3 4,-2.7 2,-0.2 -1,-0.2 0.864 103.3 54.7 -66.8 -37.0 -1.7 14.4 2.7 41 306 A I H X S+ 0 0 59 -4,-1.4 4,-1.8 1,-0.2 -1,-0.2 0.843 106.4 52.9 -63.5 -31.3 -4.5 16.8 1.6 42 307 A I H X S+ 0 0 93 -4,-1.5 4,-0.6 2,-0.2 -1,-0.2 0.821 108.7 48.7 -74.0 -31.3 -5.0 17.5 5.3 43 308 A Q H >X S+ 0 0 99 -4,-1.4 4,-1.0 2,-0.2 3,-0.9 0.896 110.4 50.9 -70.4 -42.0 -1.3 18.2 5.6 44 309 A L H 3X S+ 0 0 96 -4,-2.7 4,-2.4 1,-0.3 3,-0.4 0.854 100.5 64.8 -61.0 -35.4 -1.6 20.5 2.6 45 310 A M H 3< S+ 0 0 99 -4,-1.8 -1,-0.3 1,-0.2 5,-0.2 0.784 98.9 54.1 -57.8 -29.1 -4.6 22.1 4.4 46 311 A S H << S+ 0 0 84 -3,-0.9 3,-0.4 -4,-0.6 -1,-0.2 0.855 113.6 39.3 -76.3 -35.4 -2.1 23.3 7.0 47 312 A K H < S+ 0 0 146 -4,-1.0 2,-0.4 -3,-0.4 -2,-0.2 0.703 117.8 51.8 -85.6 -22.4 0.2 25.0 4.5 48 313 A R S < S- 0 0 155 -4,-2.4 -1,-0.3 -5,-0.2 6,-0.1 -0.582 89.8-154.9-112.6 65.3 -2.8 26.2 2.5 49 314 A S S S+ 0 0 98 -2,-0.4 -3,-0.1 -3,-0.4 3,-0.1 -0.089 74.9 26.3 -43.4 132.9 -4.8 27.9 5.3 50 315 A R S S- 0 0 197 -5,-0.2 3,-0.4 1,-0.1 -1,-0.1 0.988 70.0-178.9 68.3 77.2 -8.5 28.0 4.5 51 316 A S > + 0 0 12 1,-0.2 4,-3.2 2,-0.1 5,-0.4 -0.143 39.8 121.8-100.2 37.9 -8.7 25.1 2.1 52 317 A L H > S+ 0 0 119 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.938 80.5 40.2 -66.6 -47.2 -12.4 25.5 1.4 53 318 A N H 4 S+ 0 0 102 -3,-0.4 -1,-0.2 2,-0.2 7,-0.2 0.730 119.0 50.7 -72.7 -22.6 -12.0 25.9 -2.4 54 319 A S H >4 S+ 0 0 59 -6,-0.1 3,-1.1 -4,-0.1 -2,-0.2 0.939 113.2 39.8 -80.9 -51.4 -9.4 23.1 -2.2 55 320 A A H 3< S+ 0 0 61 -4,-3.2 3,-0.4 1,-0.3 -2,-0.2 0.844 116.8 52.2 -68.9 -33.0 -11.3 20.4 -0.3 56 321 A A T >X + 0 0 37 -4,-1.7 3,-1.1 -5,-0.4 4,-1.0 -0.153 67.1 134.0 -94.4 39.1 -14.4 21.3 -2.2 57 322 A F H <> + 0 0 107 -3,-1.1 4,-3.1 1,-0.3 -1,-0.2 0.658 61.2 74.4 -63.0 -14.3 -12.6 20.9 -5.5 58 323 A Y H 34 S+ 0 0 174 -3,-0.4 -1,-0.3 1,-0.2 -2,-0.1 0.939 102.3 36.1 -60.2 -49.4 -15.7 18.9 -6.5 59 324 A Y H <4 S+ 0 0 205 -3,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.615 117.2 56.5 -81.0 -14.5 -17.8 22.1 -6.8 60 325 A R H < 0 0 143 -4,-1.0 -2,-0.2 -7,-0.2 -1,-0.2 0.942 360.0 360.0 -78.1 -53.1 -14.8 23.9 -8.2 61 326 A V < 0 0 173 -4,-3.1 -1,-0.1 -5,-0.1 -2,-0.1 -0.116 360.0 360.0 37.8 360.0 -14.1 21.5 -11.1