==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 02-MAY-02 1LN4 . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YHBY; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR G.J.OSTHEIMER,A.BARKAN,B.W.MATTHEWS . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6017.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 70.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 13.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 34.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 79 0, 0.0 2,-0.6 0, 0.0 73,-0.5 0.000 360.0 360.0 360.0 126.3 38.5 12.6 8.1 2 2 A D + 0 0 142 71,-0.1 2,-0.3 73,-0.0 71,-0.1 -0.894 360.0 175.9-110.5 124.3 40.9 11.3 10.6 3 3 A L - 0 0 28 -2,-0.6 71,-0.0 71,-0.2 2,-0.0 -0.770 34.0 -93.9-116.5 164.4 43.5 13.6 12.1 4 4 A S > - 0 0 37 -2,-0.3 4,-3.5 1,-0.1 5,-0.2 -0.281 32.3-110.7 -76.3 166.9 46.0 13.0 14.8 5 5 A T H > S+ 0 0 103 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.896 121.9 55.1 -60.4 -40.4 45.5 13.8 18.4 6 6 A K H > S+ 0 0 119 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.960 110.4 44.9 -57.7 -49.4 48.1 16.5 18.0 7 7 A Q H > S+ 0 0 21 1,-0.2 4,-2.5 2,-0.2 -2,-0.2 0.940 114.1 49.4 -59.6 -48.9 46.1 17.9 15.1 8 8 A K H X S+ 0 0 50 -4,-3.5 4,-2.9 1,-0.2 5,-0.2 0.918 108.1 52.9 -61.0 -39.2 42.9 17.7 17.0 9 9 A Q H X S+ 0 0 109 -4,-3.2 4,-1.9 -5,-0.2 -1,-0.2 0.922 108.9 50.1 -63.4 -37.3 44.3 19.3 20.1 10 10 A H H X S+ 0 0 67 -4,-2.0 4,-1.9 -5,-0.2 5,-0.2 0.962 112.6 46.9 -61.9 -49.0 45.5 22.2 18.1 11 11 A L H X S+ 0 0 0 -4,-2.5 4,-1.9 1,-0.2 -2,-0.2 0.917 106.5 58.1 -61.5 -38.7 42.0 22.6 16.5 12 12 A K H X S+ 0 0 87 -4,-2.9 4,-1.3 1,-0.2 -1,-0.2 0.919 106.0 50.6 -58.3 -40.2 40.3 22.3 19.8 13 13 A G H < S+ 0 0 49 -4,-1.9 -1,-0.2 1,-0.2 3,-0.2 0.906 108.4 49.6 -67.7 -36.9 42.2 25.3 21.0 14 14 A L H < S+ 0 0 59 -4,-1.9 4,-0.2 1,-0.2 -1,-0.2 0.827 110.0 55.9 -70.6 -26.3 41.4 27.4 18.0 15 15 A A H >< S+ 0 0 1 -4,-1.9 3,-2.2 -5,-0.2 -1,-0.2 0.790 80.4 85.6 -77.8 -25.7 37.8 26.5 18.6 16 16 A H T 3< S+ 0 0 157 -4,-1.3 -1,-0.2 1,-0.3 -2,-0.1 0.891 92.1 46.8 -40.7 -53.2 37.3 27.6 22.2 17 17 A P T 3 S+ 0 0 100 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.652 92.6 100.6 -69.9 -15.2 36.4 31.1 21.3 18 18 A L < - 0 0 64 -3,-2.2 29,-0.1 -4,-0.2 -3,-0.0 -0.384 62.2-143.7 -74.2 154.2 34.0 30.3 18.5 19 19 A K - 0 0 178 -2,-0.1 29,-0.4 1,-0.1 -1,-0.0 -0.808 38.8 -86.9-107.6 154.1 30.2 30.4 19.0 20 20 A P - 0 0 63 0, 0.0 29,-0.2 0, 0.0 3,-0.1 -0.328 33.2-168.8 -63.4 140.0 28.1 27.7 17.2 21 21 A V S S+ 0 0 71 27,-2.3 2,-0.4 1,-0.2 28,-0.2 0.528 71.0 40.2-107.7 -9.2 27.0 28.5 13.7 22 22 A V E -a 49 0A 11 26,-1.1 28,-2.6 2,-0.0 2,-0.5 -0.998 61.8-155.3-142.0 137.3 24.5 25.8 13.2 23 23 A L E -a 50 0A 117 -2,-0.4 2,-0.6 26,-0.2 28,-0.2 -0.950 10.8-159.3-109.2 123.0 21.9 24.2 15.5 24 24 A L E -a 51 0A 1 26,-3.7 28,-3.0 -2,-0.5 29,-0.2 -0.926 23.8-140.9-101.6 117.4 21.0 20.6 14.5 25 25 A G > - 0 0 32 -2,-0.6 3,-2.3 3,-0.3 28,-0.2 -0.149 25.0 -96.8 -79.3 177.1 17.6 19.9 16.1 26 26 A S T 3 S+ 0 0 98 1,-0.3 3,-0.1 26,-0.2 -1,-0.1 0.688 117.0 76.5 -65.5 -13.7 16.1 16.9 17.8 27 27 A N T 3 S- 0 0 153 1,-0.2 -1,-0.3 26,-0.0 2,-0.2 0.735 100.6-144.7 -67.5 -15.6 14.5 16.1 14.4 28 28 A G < - 0 0 14 -3,-2.3 2,-1.8 1,-0.1 -3,-0.3 -0.475 44.0 -5.1 97.0-161.4 18.1 14.9 13.5 29 29 A L S S+ 0 0 53 -2,-0.2 2,-0.1 -3,-0.1 -1,-0.1 -0.519 72.1 171.0 -79.4 83.6 20.3 14.9 10.5 30 30 A T > - 0 0 66 -2,-1.8 4,-2.6 1,-0.1 5,-0.2 -0.466 46.9-112.0 -87.7 166.4 18.0 16.2 7.8 31 31 A E H > S+ 0 0 174 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.895 117.5 56.1 -64.0 -35.2 19.1 17.1 4.4 32 32 A G H > S+ 0 0 55 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.938 110.3 43.0 -63.6 -45.1 18.4 20.8 5.1 33 33 A V H > S+ 0 0 18 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.904 111.7 55.8 -68.9 -35.7 20.7 20.8 8.2 34 34 A L H X S+ 0 0 25 -4,-2.6 4,-2.3 1,-0.2 -2,-0.2 0.941 107.1 49.8 -58.7 -43.6 23.4 18.9 6.3 35 35 A A H X S+ 0 0 56 -4,-2.5 4,-2.1 1,-0.2 -1,-0.2 0.881 109.6 50.5 -64.3 -33.9 23.3 21.5 3.6 36 36 A E H X S+ 0 0 99 -4,-1.7 4,-2.4 2,-0.2 -1,-0.2 0.900 107.6 52.9 -70.5 -37.0 23.8 24.3 6.2 37 37 A I H X S+ 0 0 0 -4,-2.6 4,-2.8 2,-0.2 5,-0.3 0.931 107.7 53.8 -62.1 -41.8 26.7 22.4 7.8 38 38 A E H X S+ 0 0 64 -4,-2.3 4,-2.6 -5,-0.2 5,-0.2 0.956 109.4 46.5 -57.9 -48.9 28.3 22.3 4.2 39 39 A Q H X S+ 0 0 127 -4,-2.1 4,-1.8 1,-0.2 -1,-0.2 0.910 112.3 50.3 -62.2 -38.3 27.9 26.0 3.8 40 40 A A H X S+ 0 0 5 -4,-2.4 4,-2.6 2,-0.2 5,-0.4 0.930 110.8 48.7 -66.2 -42.4 29.4 26.7 7.3 41 41 A L H X S+ 0 0 0 -4,-2.8 4,-2.6 1,-0.2 -2,-0.2 0.916 111.2 51.5 -62.3 -42.2 32.4 24.4 6.6 42 42 A E H < S+ 0 0 99 -4,-2.6 -1,-0.2 -5,-0.3 -2,-0.2 0.864 114.8 42.5 -64.9 -33.8 32.9 26.2 3.3 43 43 A H H < S+ 0 0 120 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.842 135.3 9.9 -82.4 -32.9 32.9 29.5 4.8 44 44 A H H < S- 0 0 75 -4,-2.6 2,-2.5 -5,-0.2 -3,-0.2 0.616 71.9-149.9-122.8 -13.7 34.9 28.9 8.0 45 45 A E S < S+ 0 0 0 -4,-2.6 41,-1.9 -5,-0.4 2,-0.6 -0.258 85.1 58.5 69.9 -52.1 36.6 25.4 7.8 46 46 A L E S+ B 0 85A 8 -2,-2.5 2,-0.3 39,-0.2 39,-0.2 -0.946 75.3 159.2-110.7 119.5 36.5 25.1 11.7 47 47 A I E - B 0 84A 3 37,-2.7 37,-2.6 -2,-0.6 2,-0.4 -0.928 39.4-129.0-139.9 166.9 33.0 25.3 13.2 48 48 A K E - B 0 83A 29 -29,-0.4 -27,-2.3 -2,-0.3 -26,-1.1 -0.948 20.4-169.3-112.5 129.1 30.8 24.5 16.2 49 49 A V E -aB 22 82A 0 33,-2.6 33,-2.9 -2,-0.4 2,-0.5 -0.989 15.5-143.2-120.3 120.0 27.5 22.6 15.5 50 50 A K E -aB 23 81A 83 -28,-2.6 -26,-3.7 -2,-0.5 2,-0.6 -0.746 13.3-155.5 -86.6 128.0 25.1 22.4 18.5 51 51 A I E -a 24 0A 1 29,-3.4 -26,-0.2 -2,-0.5 -25,-0.1 -0.922 3.3-154.2-108.8 119.4 23.2 19.1 18.6 52 52 A A + 0 0 33 -28,-3.0 -26,-0.2 -2,-0.6 -27,-0.1 0.831 59.2 100.4 -66.3 -35.9 19.9 19.1 20.4 53 53 A T - 0 0 27 -28,-0.2 -2,-0.1 -29,-0.2 -29,-0.0 -0.195 51.2-162.6 -57.7 144.7 19.5 15.6 21.5 54 54 A E + 0 0 156 -28,-0.0 2,-0.8 5,-0.0 -1,-0.1 0.394 64.8 101.7-100.7 -3.6 20.4 14.5 25.1 55 55 A D > - 0 0 77 1,-0.2 4,-2.5 2,-0.0 5,-0.3 -0.750 63.5-153.0 -85.9 113.0 20.6 10.9 24.1 56 56 A R H > S+ 0 0 155 -2,-0.8 4,-2.7 1,-0.2 5,-0.2 0.911 91.2 49.0 -52.6 -47.8 24.3 9.8 23.8 57 57 A E H > S+ 0 0 134 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.951 112.7 46.6 -62.6 -40.9 23.8 7.1 21.3 58 58 A T H > S+ 0 0 58 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.922 110.1 53.2 -64.9 -42.9 21.7 9.1 19.0 59 59 A K H X S+ 0 0 22 -4,-2.5 4,-2.7 1,-0.2 -1,-0.2 0.923 109.0 53.4 -58.9 -39.9 24.1 12.0 19.2 60 60 A T H X S+ 0 0 44 -4,-2.7 4,-2.8 -5,-0.3 -1,-0.2 0.928 106.9 47.7 -60.0 -46.9 26.8 9.5 18.2 61 61 A L H X S+ 0 0 99 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.886 111.4 52.0 -63.7 -36.6 25.1 8.2 15.2 62 62 A I H X S+ 0 0 19 -4,-2.1 4,-2.5 2,-0.2 -2,-0.2 0.944 110.4 48.0 -65.1 -47.6 24.4 11.7 14.0 63 63 A V H X S+ 0 0 8 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.922 110.6 51.3 -61.8 -41.2 28.0 12.7 14.4 64 64 A E H X S+ 0 0 97 -4,-2.8 4,-2.4 1,-0.2 -1,-0.2 0.905 110.7 48.9 -61.9 -38.5 29.2 9.6 12.6 65 65 A A H X S+ 0 0 19 -4,-2.0 4,-2.6 -5,-0.2 5,-0.3 0.907 108.7 52.1 -68.9 -40.0 26.9 10.3 9.7 66 66 A I H X S+ 0 0 0 -4,-2.5 4,-2.7 2,-0.2 6,-0.5 0.929 109.8 50.3 -60.9 -42.6 28.0 13.9 9.4 67 67 A V H X S+ 0 0 30 -4,-2.3 4,-2.3 1,-0.2 5,-0.3 0.960 113.6 44.8 -61.0 -48.0 31.6 12.8 9.3 68 68 A R H < S+ 0 0 180 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.885 116.6 44.1 -64.1 -41.1 31.0 10.3 6.5 69 69 A E H < S+ 0 0 129 -4,-2.6 -1,-0.2 -5,-0.2 -2,-0.2 0.862 123.8 32.7 -74.4 -36.9 28.8 12.5 4.4 70 70 A T H < S- 0 0 10 -4,-2.7 -2,-0.2 -5,-0.3 -3,-0.2 0.688 91.5-132.0 -92.4 -20.2 30.9 15.7 4.6 71 71 A G < + 0 0 37 -4,-2.3 -4,-0.1 -5,-0.3 -3,-0.1 0.609 61.1 138.8 77.4 9.9 34.4 14.3 4.9 72 72 A A - 0 0 0 -6,-0.5 2,-0.4 -5,-0.3 -1,-0.2 -0.367 55.2-113.8 -80.9 166.2 35.0 16.7 7.8 73 73 A C E -C 85 0A 0 12,-3.0 12,-1.9 -3,-0.1 2,-1.1 -0.869 16.2-128.9-103.5 138.9 37.0 15.5 10.9 74 74 A N E -C 84 0A 51 -73,-0.5 10,-0.2 -2,-0.4 -71,-0.2 -0.715 27.6-177.7 -82.3 102.5 35.2 15.2 14.3 75 75 A V E - 0 0 10 8,-2.2 2,-0.3 -2,-1.1 -1,-0.2 0.933 62.4 -40.9 -68.7 -44.1 37.7 17.3 16.4 76 76 A Q E -C 83 0A 79 7,-1.2 7,-2.8 -3,-0.2 2,-0.6 -0.904 44.2-125.2-178.5 152.5 35.7 16.6 19.5 77 77 A V E -C 82 0A 23 -2,-0.3 2,-0.6 5,-0.2 5,-0.2 -0.953 28.0-174.9-105.9 118.5 32.3 16.4 20.9 78 78 A I E > -C 81 0A 79 3,-3.7 3,-2.3 -2,-0.6 2,-0.3 -0.883 59.7 -60.5-120.0 97.0 31.9 18.8 24.0 79 79 A G T 3 S- 0 0 54 -2,-0.6 -28,-0.0 1,-0.3 0, 0.0 -0.534 121.3 -15.6 67.8-128.5 28.6 18.4 25.6 80 80 A K T 3 S+ 0 0 67 -2,-0.3 -29,-3.4 -3,-0.1 2,-0.6 0.391 121.2 96.3 -86.6 1.3 26.0 19.2 22.9 81 81 A T E < -BC 50 78A 26 -3,-2.3 -3,-3.7 -31,-0.2 2,-0.5 -0.853 56.2-162.8-103.5 125.1 28.6 20.9 20.8 82 82 A L E -BC 49 77A 0 -33,-2.9 -33,-2.6 -2,-0.6 2,-0.6 -0.850 9.1-152.7 -98.7 126.9 30.4 19.1 17.9 83 83 A V E -BC 48 76A 0 -7,-2.8 -8,-2.2 -2,-0.5 -7,-1.2 -0.889 21.3-177.2-101.8 123.7 33.6 20.8 16.7 84 84 A L E -BC 47 74A 0 -37,-2.6 -37,-2.7 -2,-0.6 2,-0.4 -0.949 11.1-167.5-123.3 144.6 34.2 19.9 13.0 85 85 A Y E +BC 46 73A 1 -12,-1.9 -12,-3.0 -2,-0.4 -39,-0.2 -0.997 15.9 156.7-135.1 135.2 37.0 20.8 10.7 86 86 A R - 0 0 32 -41,-1.9 -14,-0.1 -2,-0.4 -2,-0.0 -0.930 34.1-127.5-151.4 126.8 37.3 20.5 6.9 87 87 A P - 0 0 41 0, 0.0 2,-0.3 0, 0.0 -42,-0.1 -0.303 14.5-154.4 -77.8 161.8 39.7 22.5 4.8 88 88 A T > - 0 0 21 -44,-0.1 3,-1.9 -45,-0.0 4,-0.1 -0.794 40.8 -94.6-120.7 168.4 39.0 24.6 1.7 89 89 A K T 3 S+ 0 0 219 1,-0.3 -1,-0.0 -2,-0.3 0, 0.0 0.880 124.6 60.3 -53.7 -39.2 41.3 25.6 -1.1 90 90 A E T 3 S- 0 0 139 1,-0.1 -1,-0.3 -3,-0.0 0, 0.0 0.684 95.0-143.8 -64.7 -19.2 42.0 28.8 0.8 91 91 A R < + 0 0 129 -3,-1.9 -2,-0.1 1,-0.1 -1,-0.1 0.989 30.1 171.1 54.7 62.2 43.3 27.1 3.9 92 92 A K + 0 0 93 -4,-0.1 2,-0.3 2,-0.1 -1,-0.1 0.899 55.6 63.9 -70.0 -36.8 41.9 29.5 6.4 93 93 A I S S- 0 0 38 1,-0.1 2,-0.1 0, 0.0 -82,-0.0 -0.716 79.8-125.6 -96.8 141.3 42.8 27.4 9.5 94 94 A S + 0 0 62 -2,-0.3 -80,-0.1 -84,-0.1 -1,-0.1 -0.277 28.7 178.0 -77.2 163.8 46.2 26.5 10.8 95 95 A L - 0 0 35 -2,-0.1 2,-0.2 -85,-0.0 -88,-0.1 -0.954 35.0-113.6-164.1 143.8 47.3 23.0 11.4 96 96 A P - 0 0 34 0, 0.0 2,-0.4 0, 0.0 -89,-0.0 -0.582 44.4-133.4 -73.6 140.7 50.4 21.0 12.6 97 97 A L 0 0 141 -2,-0.2 -2,-0.0 -90,-0.0 0, 0.0 -0.858 360.0 360.0-106.0 136.8 51.5 19.0 9.6 98 98 A E 0 0 139 -2,-0.4 0, 0.0 -94,-0.0 0, 0.0 -0.754 360.0 360.0-120.6 360.0 52.4 15.3 9.8