==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN/RNA 03-MAY-02 1LNG . COMPND 2 MOLECULE: 7S.S SRP RNA; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; . AUTHOR T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5540.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 59.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 23.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 61 0, 0.0 65,-2.0 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 146.0 19.6 -0.7 29.0 2 2 A I E -A 65 0A 57 63,-0.2 2,-0.6 61,-0.0 63,-0.2 -0.861 360.0-162.3-109.8 141.5 20.9 -3.5 31.1 3 3 A I E -A 64 0A 1 61,-2.6 61,-2.3 -2,-0.4 3,-0.0 -0.963 6.4-163.9-120.2 116.6 19.0 -6.2 32.9 4 4 A W > - 0 0 34 -2,-0.6 3,-1.9 59,-0.2 4,-0.3 -0.806 23.3-132.6 -94.9 138.1 20.8 -8.0 35.5 5 5 A P G >> S+ 0 0 10 0, 0.0 3,-1.8 0, 0.0 4,-0.7 0.840 104.9 68.3 -56.4 -38.6 19.2 -11.3 36.7 6 6 A S G 34 S+ 0 0 2 1,-0.3 3,-0.4 2,-0.2 6,-0.1 0.769 84.5 73.5 -51.7 -26.2 19.7 -10.2 40.3 7 7 A Y G <4 S+ 0 0 21 -3,-1.9 12,-2.9 1,-0.2 13,-1.2 0.825 112.8 23.2 -58.6 -32.2 17.0 -7.5 39.7 8 8 A I T <4 S+ 0 0 0 -3,-1.8 18,-2.6 -4,-0.3 2,-0.8 0.266 88.8 128.4-121.5 6.2 14.3 -10.1 39.7 9 9 A D B >< -c 26 0B 10 -4,-0.7 3,-1.5 -3,-0.4 18,-0.2 -0.571 44.5-159.2 -69.9 110.4 15.9 -12.9 41.7 10 10 A K T 3 S+ 0 0 72 16,-1.5 17,-0.2 -2,-0.8 -1,-0.2 0.739 90.5 62.8 -57.6 -28.9 13.5 -13.9 44.5 11 11 A K T 3 S+ 0 0 120 15,-0.3 -1,-0.3 2,-0.0 2,-0.2 0.787 94.1 77.4 -71.0 -21.5 16.5 -15.4 46.4 12 12 A K S < S- 0 0 20 -3,-1.5 2,-0.1 -6,-0.1 5,-0.0 -0.587 74.4-136.3 -93.9 147.7 18.1 -12.0 46.7 13 13 A S > - 0 0 55 -2,-0.2 5,-2.1 1,-0.1 3,-0.1 -0.380 35.1 -99.6 -84.3 174.2 17.2 -9.3 49.0 14 14 A R T > 5S+ 0 0 128 3,-0.2 3,-3.4 1,-0.2 -1,-0.1 0.968 122.8 57.2 -60.3 -49.6 17.0 -5.7 47.9 15 15 A R T 3 5S+ 0 0 179 1,-0.3 -1,-0.2 2,-0.2 -3,-0.0 0.865 104.8 54.8 -49.4 -37.1 20.4 -4.7 49.2 16 16 A E T 3 5S- 0 0 84 -3,-0.1 -1,-0.3 1,-0.1 -2,-0.2 0.334 135.7 -82.6 -79.3 5.7 21.8 -7.6 47.0 17 17 A G T < 5S+ 0 0 3 -3,-3.4 2,-0.2 1,-0.3 -3,-0.2 0.354 77.1 145.3 116.3 -9.2 20.1 -6.0 43.9 18 18 A R < + 0 0 19 -5,-2.1 -1,-0.3 1,-0.2 -11,-0.2 -0.483 15.3 173.8 -68.5 132.9 16.5 -7.1 43.8 19 19 A K + 0 0 75 -12,-2.9 -1,-0.2 -2,-0.2 -11,-0.2 0.399 56.0 79.0-115.7 -3.4 14.4 -4.3 42.3 20 20 A V S S- 0 0 0 -13,-1.2 5,-0.1 -11,-0.1 53,-0.0 -0.855 85.2-109.3-115.8 141.4 11.1 -6.2 42.2 21 21 A P >> - 0 0 32 0, 0.0 3,-1.6 0, 0.0 4,-1.5 -0.182 39.1-101.7 -66.8 162.8 8.8 -6.9 45.1 22 22 A E T 34 S+ 0 0 86 1,-0.3 3,-0.3 2,-0.2 -12,-0.1 0.886 115.0 58.6 -56.6 -46.0 8.6 -10.5 46.3 23 23 A E T 34 S+ 0 0 146 1,-0.2 -1,-0.3 3,-0.0 -13,-0.0 0.611 114.0 37.5 -65.7 -7.3 5.3 -11.6 44.7 24 24 A L T <4 S+ 0 0 26 -3,-1.6 -1,-0.2 2,-0.0 -2,-0.2 0.611 93.0 110.0-110.1 -21.9 6.6 -10.8 41.1 25 25 A A < - 0 0 1 -4,-1.5 2,-0.5 -3,-0.3 -16,-0.2 -0.171 61.3-136.9 -61.3 148.8 10.2 -12.0 41.6 26 26 A I B -c 9 0B 24 -18,-2.6 -16,-1.5 4,-0.0 2,-0.4 -0.911 17.1-122.0-108.5 129.1 11.4 -15.2 40.0 27 27 A E S S- 0 0 113 -2,-0.5 -18,-0.1 1,-0.3 -19,-0.0 -0.565 91.1 -14.6 -71.8 126.3 13.6 -17.7 41.8 28 28 A K S S- 0 0 141 -2,-0.4 -1,-0.3 1,-0.1 2,-0.1 0.949 92.7-148.2 40.7 70.6 16.9 -18.2 40.0 29 29 A P - 0 0 17 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.333 1.8-129.8 -71.7 145.3 15.7 -16.5 36.8 30 30 A S > - 0 0 31 1,-0.1 4,-2.9 -2,-0.1 3,-0.4 -0.745 8.0-141.7-101.5 140.0 17.0 -17.5 33.4 31 31 A L H > S+ 0 0 3 -2,-0.4 4,-3.1 1,-0.2 5,-0.2 0.852 107.0 61.7 -60.4 -32.2 18.3 -15.2 30.8 32 32 A K H > S+ 0 0 127 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.893 108.7 41.0 -58.5 -45.0 16.5 -17.5 28.3 33 33 A D H > S+ 0 0 65 -3,-0.4 4,-2.6 2,-0.2 5,-0.2 0.897 114.3 52.7 -68.6 -42.2 13.2 -16.6 30.0 34 34 A I H X S+ 0 0 0 -4,-2.9 4,-1.8 1,-0.2 -2,-0.2 0.954 111.9 45.6 -62.0 -44.0 14.2 -12.9 30.3 35 35 A E H X S+ 0 0 49 -4,-3.1 4,-1.8 2,-0.2 -1,-0.2 0.911 111.4 52.0 -61.4 -45.1 15.1 -12.8 26.6 36 36 A K H X S+ 0 0 104 -4,-1.8 4,-2.1 -5,-0.2 3,-0.2 0.943 110.1 49.3 -60.4 -45.2 11.8 -14.6 25.6 37 37 A A H X S+ 0 0 0 -4,-2.6 4,-0.9 1,-0.2 -1,-0.2 0.884 109.5 51.5 -60.1 -41.2 9.7 -12.1 27.6 38 38 A L H <>S+ 0 0 0 -4,-1.8 5,-2.0 -5,-0.2 -1,-0.2 0.822 108.2 51.3 -68.0 -32.3 11.4 -9.1 26.1 39 39 A K H ><5S+ 0 0 106 -4,-1.8 3,-2.3 1,-0.2 -1,-0.2 0.894 103.3 58.2 -72.5 -39.3 10.8 -10.3 22.6 40 40 A K H 3<5S+ 0 0 149 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.799 103.7 56.1 -57.1 -26.9 7.2 -10.8 23.4 41 41 A L T 3<5S- 0 0 57 -4,-0.9 -1,-0.3 -5,-0.2 -2,-0.2 0.338 123.5-104.5 -88.9 5.2 7.3 -7.1 24.2 42 42 A G T < 5S+ 0 0 69 -3,-2.3 -3,-0.2 1,-0.3 -2,-0.1 0.455 79.5 126.2 89.9 3.8 8.6 -6.1 20.8 43 43 A L < - 0 0 34 -5,-2.0 -1,-0.3 23,-0.0 25,-0.1 -0.311 62.3-123.1 -94.0 170.4 12.2 -5.4 21.9 44 44 A E - 0 0 150 23,-0.3 23,-0.3 -2,-0.1 -5,-0.1 -0.713 33.7-170.9-115.5 83.9 15.6 -6.7 20.6 45 45 A P - 0 0 13 0, 0.0 2,-0.3 0, 0.0 21,-0.2 -0.298 6.8-162.5 -72.3 155.8 17.3 -8.3 23.6 46 46 A K E -B 65 0A 84 19,-1.4 19,-2.4 2,-0.0 2,-0.3 -0.973 11.7-140.8-141.6 122.0 20.9 -9.5 23.4 47 47 A I E -B 64 0A 50 -2,-0.3 2,-0.4 17,-0.2 17,-0.2 -0.617 12.9-171.1 -86.8 141.1 22.3 -11.9 25.9 48 48 A Y E > +B 63 0A 87 15,-3.0 15,-2.1 -2,-0.3 3,-0.5 -0.887 4.8 179.2-129.2 103.1 25.8 -11.5 27.3 49 49 A R T 3 S+ 0 0 130 -2,-0.4 13,-0.1 13,-0.3 -1,-0.1 0.692 73.1 67.4 -77.0 -18.7 26.7 -14.6 29.3 50 50 A D T 3 S+ 0 0 114 11,-0.1 -1,-0.2 13,-0.1 12,-0.1 0.780 79.0 101.9 -73.7 -25.4 30.2 -13.5 30.2 51 51 A K < - 0 0 118 -3,-0.5 11,-2.7 12,-0.1 2,-0.4 -0.225 52.0-159.1 -73.0 144.9 29.1 -10.5 32.4 52 52 A R - 0 0 119 9,-0.2 5,-0.2 8,-0.2 8,-0.1 -0.960 19.0-124.6-123.9 140.9 29.1 -10.5 36.2 53 53 A Y > - 0 0 16 6,-0.5 3,-2.4 3,-0.4 6,-0.3 -0.707 19.9-135.3 -85.9 124.5 27.2 -8.2 38.6 54 54 A P G > S+ 0 0 96 0, 0.0 3,-1.3 0, 0.0 -1,-0.1 0.792 103.9 63.9 -54.4 -33.4 29.5 -6.4 41.0 55 55 A R G 3 S+ 0 0 114 1,-0.3 3,-0.1 2,-0.1 -38,-0.0 0.766 123.0 21.9 -63.8 -23.0 27.3 -7.0 43.9 56 56 A Q G X S+ 0 0 5 -3,-2.4 3,-1.6 3,-0.1 -3,-0.4 -0.523 78.2 163.4-134.5 61.0 28.1 -10.8 43.2 57 57 A H T < S+ 0 0 119 -3,-1.3 -2,-0.1 1,-0.3 -1,-0.1 0.724 73.2 56.6 -57.7 -23.4 31.3 -10.5 41.3 58 58 A W T 3 S+ 0 0 167 -4,-0.1 2,-0.8 1,-0.1 -1,-0.3 0.735 91.4 83.3 -78.2 -21.3 32.2 -14.2 41.8 59 59 A E S < S- 0 0 71 -3,-1.6 2,-2.5 -6,-0.3 -6,-0.5 -0.724 71.7-148.6 -93.3 105.3 28.9 -15.4 40.3 60 60 A I + 0 0 116 -2,-0.8 -8,-0.2 1,-0.2 -9,-0.1 -0.374 41.7 148.0 -71.3 73.0 29.0 -15.6 36.4 61 61 A C - 0 0 23 -2,-2.5 -1,-0.2 -5,-0.2 -30,-0.2 0.720 38.6-149.8 -82.2 -26.8 25.3 -14.7 35.9 62 62 A G - 0 0 0 -11,-2.7 2,-0.3 -3,-0.2 -13,-0.3 -0.195 10.2-126.5 78.0-177.7 25.4 -12.8 32.6 63 63 A C E - B 0 48A 1 -15,-2.1 -15,-3.0 -59,-0.1 2,-0.4 -0.971 4.5-117.8-157.7 169.3 23.0 -10.0 31.6 64 64 A V E -AB 3 47A 0 -61,-2.3 -61,-2.6 -2,-0.3 2,-0.5 -0.961 18.9-161.4-117.6 127.4 20.6 -8.8 28.9 65 65 A E E +AB 2 46A 83 -19,-2.4 -19,-1.4 -2,-0.4 2,-0.3 -0.929 19.4 162.4-107.0 130.0 21.1 -5.6 27.0 66 66 A V - 0 0 0 -65,-2.0 2,-0.7 -2,-0.5 -2,-0.0 -0.975 41.9-117.8-146.1 138.3 18.0 -4.1 25.2 67 67 A D + 0 0 109 -23,-0.3 2,-0.4 -2,-0.3 -23,-0.3 -0.655 48.5 163.1 -77.5 115.6 17.5 -0.6 23.8 68 68 A Y - 0 0 64 -2,-0.7 4,-0.1 2,-0.1 -2,-0.1 -0.999 29.5-175.4-138.7 140.0 14.6 0.7 25.8 69 69 A K + 0 0 174 -2,-0.4 3,-0.1 2,-0.1 2,-0.1 0.335 61.5 83.3-117.5 7.7 13.4 4.3 26.3 70 70 A G S S- 0 0 36 1,-0.2 2,-0.3 2,-0.1 -2,-0.1 -0.204 97.2 -50.7 -97.8-168.7 10.6 3.7 28.8 71 71 A N > - 0 0 93 1,-0.1 4,-1.5 -2,-0.1 -1,-0.2 -0.487 46.8-151.9 -67.2 127.4 10.6 3.4 32.6 72 72 A K H > S+ 0 0 66 -2,-0.3 4,-2.2 2,-0.2 3,-0.2 0.948 91.4 46.8 -68.4 -53.3 13.1 0.7 33.6 73 73 A L H > S+ 0 0 55 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.907 112.3 52.7 -55.1 -44.4 11.5 -0.5 36.9 74 74 A Q H > S+ 0 0 103 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.839 106.1 52.0 -64.9 -34.8 8.2 -0.8 35.1 75 75 A L H X S+ 0 0 4 -4,-1.5 4,-3.0 2,-0.2 -1,-0.2 0.917 109.0 52.3 -65.2 -38.4 9.7 -2.9 32.3 76 76 A L H X S+ 0 0 2 -4,-2.2 4,-2.1 1,-0.2 -2,-0.2 0.899 108.0 50.7 -65.4 -37.1 11.1 -5.2 35.0 77 77 A K H X S+ 0 0 72 -4,-2.2 4,-1.9 2,-0.2 -1,-0.2 0.910 112.2 47.2 -66.2 -36.7 7.7 -5.5 36.5 78 78 A E H X S+ 0 0 99 -4,-1.8 4,-2.6 2,-0.2 -2,-0.2 0.912 108.6 53.8 -70.3 -44.7 6.2 -6.4 33.1 79 79 A I H X S+ 0 0 0 -4,-3.0 4,-2.7 1,-0.2 -1,-0.2 0.917 109.9 49.2 -50.6 -49.7 9.0 -8.9 32.3 80 80 A C H X S+ 0 0 0 -4,-2.1 4,-2.9 1,-0.2 -1,-0.2 0.918 109.8 49.5 -60.5 -47.0 8.2 -10.7 35.6 81 81 A K H < S+ 0 0 131 -4,-1.9 -1,-0.2 2,-0.2 -2,-0.2 0.886 111.9 49.9 -60.7 -41.2 4.4 -10.8 35.0 82 82 A I H >< S+ 0 0 24 -4,-2.6 3,-2.0 2,-0.2 4,-0.3 0.983 112.1 47.3 -59.8 -55.6 5.1 -12.3 31.5 83 83 A I H >< S+ 0 0 19 -4,-2.7 3,-1.1 1,-0.3 -2,-0.2 0.917 113.1 46.3 -53.4 -50.0 7.4 -14.9 32.8 84 84 A K T 3< S+ 0 0 105 -4,-2.9 -1,-0.3 1,-0.2 -2,-0.2 0.487 110.8 61.7 -69.4 1.4 5.1 -16.0 35.7 85 85 A G T < + 0 0 52 -3,-2.0 2,-0.4 -5,-0.2 -1,-0.2 0.326 60.5 126.7-116.4 7.3 2.3 -16.0 33.0 86 86 A K < 0 0 91 -3,-1.1 -3,-0.0 -4,-0.3 -4,-0.0 -0.562 360.0 360.0 -65.9 119.8 3.3 -18.6 30.4 87 87 A N 0 0 234 -2,-0.4 -1,-0.1 0, 0.0 0, 0.0 0.936 360.0 360.0 -46.0 360.0 0.2 -20.8 30.2