==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-MAR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 08-JAN-12 2LNZ . COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN MDY2; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR J.W.CHARTRON,D.G.VANDERVELDE,M.RAO,W.M.CLEMONS JR. . 80 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5277.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 76.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 173 A Q 0 0 103 0, 0.0 2,-1.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 136.4 13.1 7.8 -3.5 2 174 A E + 0 0 187 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.685 360.0 136.6 -99.4 80.4 13.8 5.0 -6.0 3 175 A L - 0 0 27 -2,-1.2 2,-0.5 65,-0.1 62,-0.0 -0.989 41.5-148.7-132.1 135.3 11.4 2.4 -4.7 4 176 A T - 0 0 110 -2,-0.4 65,-0.1 2,-0.0 -2,-0.0 -0.886 10.2-156.6-106.9 133.0 9.0 0.1 -6.5 5 177 A V - 0 0 8 -2,-0.5 2,-1.6 64,-0.0 3,-0.2 -0.908 20.3-127.1-109.7 130.9 5.7 -1.0 -5.0 6 178 A P > + 0 0 14 0, 0.0 4,-2.4 0, 0.0 5,-0.2 -0.581 33.7 172.1 -76.0 89.2 3.9 -4.2 -6.1 7 179 A W H > S+ 0 0 61 -2,-1.6 4,-2.1 2,-0.2 5,-0.1 0.770 75.8 55.8 -71.4 -26.1 0.5 -2.7 -6.8 8 180 A D H > S+ 0 0 121 2,-0.2 4,-1.8 -3,-0.2 -1,-0.2 0.952 111.6 41.3 -68.4 -49.6 -0.7 -5.9 -8.2 9 181 A D H > S+ 0 0 78 1,-0.2 4,-1.9 2,-0.2 -2,-0.2 0.877 115.9 50.7 -67.0 -38.2 0.1 -7.9 -5.1 10 182 A I H X S+ 0 0 0 -4,-2.4 4,-2.8 2,-0.2 5,-0.3 0.908 107.8 52.5 -66.8 -40.9 -1.2 -5.2 -2.9 11 183 A E H X S+ 0 0 81 -4,-2.1 4,-1.8 1,-0.2 -1,-0.2 0.874 109.9 49.8 -61.3 -36.3 -4.5 -5.0 -4.9 12 184 A A H X S+ 0 0 49 -4,-1.8 4,-2.1 2,-0.2 -1,-0.2 0.870 110.7 49.7 -69.1 -35.6 -4.7 -8.8 -4.3 13 185 A L H X S+ 0 0 29 -4,-1.9 4,-2.5 2,-0.2 -2,-0.2 0.921 115.1 42.0 -68.5 -45.0 -4.1 -8.3 -0.6 14 186 A L H X S+ 0 0 0 -4,-2.8 4,-2.2 2,-0.2 -1,-0.2 0.776 110.7 58.4 -72.6 -27.0 -6.7 -5.6 -0.3 15 187 A K H < S+ 0 0 77 -4,-1.8 -2,-0.2 -5,-0.3 5,-0.2 0.918 112.8 39.0 -65.8 -45.0 -9.0 -7.6 -2.6 16 188 A N H >< S+ 0 0 107 -4,-2.1 3,-1.4 1,-0.2 -2,-0.2 0.874 115.2 53.6 -68.2 -40.4 -8.8 -10.5 -0.0 17 189 A N H 3< S+ 0 0 61 -4,-2.5 -2,-0.2 1,-0.3 -1,-0.2 0.850 115.1 40.4 -64.5 -34.6 -8.9 -8.0 2.8 18 190 A F T >< S+ 0 0 29 -4,-2.2 2,-4.4 -5,-0.1 3,-0.6 -0.277 75.1 166.5-111.3 32.5 -12.1 -6.5 1.4 19 191 A E T < S+ 0 0 157 -3,-1.4 -3,-0.1 1,-0.2 -4,-0.1 -0.133 81.6 25.1 -33.2 40.9 -13.6 -9.9 0.4 20 192 A N T 3 S+ 0 0 137 -2,-4.4 2,-1.0 -5,-0.2 -1,-0.2 0.066 112.4 64.7-176.4 -46.6 -16.9 -8.1 -0.1 21 193 A D X> + 0 0 88 -3,-0.6 4,-1.8 1,-0.2 3,-0.5 -0.696 46.1 162.7-104.2 82.0 -16.2 -4.5 -0.9 22 194 A Q H 3> S+ 0 0 91 -2,-1.0 4,-2.3 1,-0.3 -1,-0.2 0.847 80.4 61.2 -65.6 -33.8 -14.4 -4.4 -4.2 23 195 A A H 3> S+ 0 0 61 1,-0.2 4,-2.2 2,-0.2 -1,-0.3 0.827 104.0 49.3 -57.5 -32.6 -15.3 -0.8 -4.3 24 196 A A H <> S+ 0 0 7 -3,-0.5 4,-2.7 2,-0.2 5,-0.3 0.873 104.9 56.8 -77.1 -37.1 -13.3 -0.4 -1.2 25 197 A V H X S+ 0 0 6 -4,-1.8 4,-2.2 -7,-0.2 -2,-0.2 0.915 110.1 47.3 -54.9 -43.4 -10.4 -2.3 -2.7 26 198 A R H X S+ 0 0 163 -4,-2.3 4,-2.9 2,-0.2 5,-0.3 0.976 112.1 47.1 -60.2 -57.5 -10.5 0.4 -5.4 27 199 A Q H X S+ 0 0 79 -4,-2.2 4,-1.5 1,-0.2 -2,-0.2 0.845 114.9 46.3 -58.7 -37.0 -10.7 3.3 -3.1 28 200 A V H X S+ 0 0 0 -4,-2.7 4,-2.2 2,-0.2 -1,-0.2 0.908 114.6 46.4 -75.2 -39.3 -7.8 2.0 -0.9 29 201 A M H X S+ 0 0 5 -4,-2.2 4,-2.2 -5,-0.3 -2,-0.2 0.888 114.1 47.9 -68.8 -38.1 -5.6 1.1 -3.8 30 202 A E H X S+ 0 0 102 -4,-2.9 4,-2.2 2,-0.2 -1,-0.2 0.808 113.5 47.7 -74.8 -28.1 -6.2 4.5 -5.5 31 203 A R H X S+ 0 0 23 -4,-1.5 4,-2.6 -5,-0.3 -2,-0.2 0.844 111.5 50.5 -80.3 -35.5 -5.6 6.3 -2.3 32 204 A L H X S+ 0 0 0 -4,-2.2 4,-1.9 2,-0.2 -2,-0.2 0.902 115.2 43.5 -63.0 -42.5 -2.4 4.3 -1.7 33 205 A Q H X S+ 0 0 89 -4,-2.2 4,-1.8 2,-0.2 -2,-0.2 0.927 116.2 46.0 -70.9 -46.0 -1.2 5.1 -5.2 34 206 A K H X S+ 0 0 122 -4,-2.2 4,-1.3 1,-0.2 -2,-0.2 0.942 114.3 48.9 -60.2 -48.7 -2.2 8.8 -5.0 35 207 A G H X S+ 0 0 0 -4,-2.6 4,-2.9 1,-0.2 -1,-0.2 0.855 106.5 56.2 -58.9 -37.7 -0.6 9.1 -1.6 36 208 A W H < S+ 0 0 30 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.887 109.6 46.7 -59.8 -38.2 2.5 7.4 -3.0 37 209 A S H < S+ 0 0 68 -4,-1.8 3,-0.3 -3,-0.2 -1,-0.2 0.710 115.7 46.2 -76.0 -22.1 2.5 10.2 -5.6 38 210 A L H < S+ 0 0 76 -4,-1.3 -2,-0.2 1,-0.2 -1,-0.2 0.816 108.0 54.3 -87.7 -34.2 1.9 12.8 -2.9 39 211 A A < 0 0 9 -4,-2.9 -1,-0.2 33,-0.2 -2,-0.1 0.159 360.0 360.0 -89.4 17.9 4.5 11.5 -0.4 40 212 A K 0 0 182 -3,-0.3 -3,-0.0 -5,-0.1 -4,-0.0 -0.649 360.0 360.0 -74.4 360.0 7.3 11.6 -2.9 41 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 42 173 B Q 0 0 100 0, 0.0 2,-1.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 136.6 -13.0 7.9 3.4 43 174 B E + 0 0 190 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.686 360.0 136.6 -99.5 80.3 -13.6 5.2 6.0 44 175 B L - 0 0 27 -2,-1.2 2,-0.5 -17,-0.1 -20,-0.0 -0.988 41.5-148.8-132.0 135.5 -11.2 2.5 4.8 45 176 B T - 0 0 110 -2,-0.4 -17,-0.1 2,-0.0 -2,-0.0 -0.890 10.1-156.6-106.9 132.9 -8.7 0.3 6.8 46 177 B V - 0 0 7 -2,-0.5 2,-1.6 -18,-0.0 3,-0.2 -0.909 20.4-127.0-109.8 130.7 -5.5 -0.8 5.3 47 178 B P > + 0 0 15 0, 0.0 4,-2.4 0, 0.0 5,-0.2 -0.582 33.7 172.2 -75.6 89.2 -3.6 -3.9 6.5 48 179 B W H > S+ 0 0 62 -2,-1.6 4,-2.1 2,-0.2 5,-0.1 0.775 75.8 55.8 -71.3 -26.2 -0.2 -2.4 7.1 49 180 B D H > S+ 0 0 123 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.952 111.6 41.3 -68.3 -49.5 1.0 -5.6 8.7 50 181 B D H > S+ 0 0 78 1,-0.2 4,-1.9 2,-0.2 -2,-0.2 0.871 115.9 50.7 -67.1 -38.3 0.2 -7.7 5.7 51 182 B I H X S+ 0 0 0 -4,-2.4 4,-2.8 2,-0.2 5,-0.3 0.909 107.8 52.5 -66.7 -41.0 1.5 -5.0 3.4 52 183 B E H X S+ 0 0 80 -4,-2.1 4,-1.8 1,-0.2 -2,-0.2 0.875 109.9 49.9 -61.3 -36.2 4.7 -4.8 5.3 53 184 B A H X S+ 0 0 50 -4,-1.8 4,-2.2 2,-0.2 -1,-0.2 0.872 110.7 49.7 -69.1 -35.8 5.0 -8.5 5.0 54 185 B L H X S+ 0 0 29 -4,-1.9 4,-2.5 2,-0.2 -2,-0.2 0.921 115.1 42.0 -68.3 -45.1 4.4 -8.2 1.2 55 186 B L H X S+ 0 0 0 -4,-2.8 4,-2.2 2,-0.2 -1,-0.2 0.775 110.7 58.4 -72.6 -27.0 7.0 -5.5 0.8 56 187 B K H < S+ 0 0 76 -4,-1.8 5,-0.2 -5,-0.3 -2,-0.2 0.925 112.8 38.9 -65.6 -45.4 9.3 -7.4 3.2 57 188 B N H >< S+ 0 0 108 -4,-2.2 3,-1.5 1,-0.2 -2,-0.2 0.875 115.1 53.7 -68.0 -40.5 9.1 -10.3 0.7 58 189 B N H 3< S+ 0 0 61 -4,-2.5 -2,-0.2 1,-0.3 -1,-0.2 0.846 115.2 40.3 -64.4 -34.3 9.2 -8.0 -2.2 59 190 B F T >< S+ 0 0 30 -4,-2.2 2,-4.5 -5,-0.1 3,-0.6 -0.273 75.1 166.6-111.5 32.2 12.4 -6.4 -0.9 60 191 B E T < S+ 0 0 156 -3,-1.5 -3,-0.1 1,-0.2 -4,-0.1 -0.131 81.6 25.4 -33.2 41.1 13.9 -9.8 0.3 61 192 B N T 3 S+ 0 0 136 -2,-4.5 2,-1.0 -5,-0.2 -1,-0.2 0.067 112.4 64.5-176.3 -46.9 17.2 -8.0 0.7 62 193 B D <> + 0 0 88 -3,-0.6 4,-1.8 1,-0.2 3,-0.5 -0.700 46.0 162.6-104.0 82.0 16.5 -4.3 1.3 63 194 B Q H > S+ 0 0 90 -2,-1.0 4,-2.3 1,-0.3 -1,-0.2 0.847 80.5 61.2 -65.7 -33.8 14.6 -4.1 4.6 64 195 B A H > S+ 0 0 62 1,-0.2 4,-2.3 2,-0.2 -1,-0.3 0.832 104.1 49.2 -57.5 -32.6 15.5 -0.4 4.6 65 196 B A H > S+ 0 0 7 -3,-0.5 4,-2.7 2,-0.2 5,-0.3 0.872 104.9 56.8 -77.0 -37.2 13.5 -0.2 1.4 66 197 B V H X S+ 0 0 6 -4,-1.8 4,-2.2 -7,-0.2 -2,-0.2 0.915 110.1 47.3 -55.0 -43.5 10.7 -2.1 3.1 67 198 B R H X S+ 0 0 164 -4,-2.3 4,-2.9 2,-0.2 5,-0.3 0.975 112.0 47.2 -60.2 -57.5 10.7 0.7 5.6 68 199 B Q H X S+ 0 0 80 -4,-2.3 4,-1.5 1,-0.2 -2,-0.2 0.847 114.9 46.2 -58.6 -37.0 10.9 3.5 3.2 69 200 B V H X S+ 0 0 0 -4,-2.7 4,-2.2 2,-0.2 -1,-0.2 0.907 114.6 46.5 -75.3 -39.4 8.1 2.1 1.0 70 201 B M H X S+ 0 0 5 -4,-2.2 4,-2.2 -5,-0.3 -2,-0.2 0.890 114.1 47.8 -68.7 -38.2 5.8 1.4 4.0 71 202 B E H X S+ 0 0 101 -4,-2.9 4,-2.2 2,-0.2 -1,-0.2 0.807 113.4 47.7 -74.8 -28.1 6.4 4.8 5.6 72 203 B R H X S+ 0 0 23 -4,-1.5 4,-2.6 -5,-0.3 -2,-0.2 0.845 111.5 50.5 -80.3 -35.6 5.7 6.5 2.2 73 204 B L H X S+ 0 0 0 -4,-2.2 4,-1.9 2,-0.2 -2,-0.2 0.901 115.3 43.5 -63.0 -42.6 2.6 4.4 1.7 74 205 B Q H X S+ 0 0 87 -4,-2.2 4,-1.9 2,-0.2 -2,-0.2 0.927 116.2 46.0 -70.9 -46.0 1.4 5.4 5.2 75 206 B K H X S+ 0 0 122 -4,-2.2 4,-1.3 1,-0.2 -2,-0.2 0.942 114.4 48.8 -60.0 -48.9 2.4 9.0 4.9 76 207 B G H X S+ 0 0 0 -4,-2.6 4,-2.9 1,-0.2 -1,-0.2 0.852 106.5 56.3 -59.0 -37.6 0.8 9.1 1.5 77 208 B W H < S+ 0 0 31 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.889 109.6 46.6 -59.8 -38.4 -2.3 7.5 2.9 78 209 B S H < S+ 0 0 68 -4,-1.9 3,-0.3 1,-0.2 -2,-0.2 0.712 115.7 46.2 -75.8 -22.1 -2.4 10.4 5.4 79 210 B L H < S+ 0 0 75 -4,-1.3 -2,-0.2 1,-0.2 -1,-0.2 0.816 108.0 54.3 -87.8 -34.2 -1.8 12.9 2.5 80 211 B A < 0 0 9 -4,-2.9 -1,-0.2 -49,-0.2 -2,-0.1 0.168 360.0 360.0 -89.3 17.3 -4.4 11.5 0.1 81 212 B K 0 0 184 -3,-0.3 -3,-0.0 -5,-0.1 -4,-0.0 -0.651 360.0 360.0 -74.0 360.0 -7.2 11.7 2.6