==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 25-NOV-98 1LOU . COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR D.E.OTZEN,O.KRISTENSEN,M.PROCTOR,M.OLIVEBERG . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6324.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 73 75.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 34 35.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 22.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 137 0, 0.0 2,-0.3 0, 0.0 34,-0.0 0.000 360.0 360.0 360.0 150.5 5.3 8.6 20.3 2 2 A R E -A 67 0A 113 65,-2.0 65,-2.7 2,-0.0 2,-0.4 -0.965 360.0-109.6-149.4 159.6 4.6 6.4 17.3 3 3 A R E +A 66 0A 91 -2,-0.3 90,-2.4 63,-0.2 2,-0.3 -0.764 37.6 174.9-102.8 135.0 6.6 5.1 14.4 4 4 A Y E -AB 65 92A 24 61,-2.8 61,-2.5 -2,-0.4 2,-0.5 -0.904 28.8-130.8-136.4 156.7 6.0 6.4 10.9 5 5 A E E -AB 64 91A 38 86,-3.3 86,-2.5 -2,-0.3 2,-0.5 -0.943 20.6-159.2-109.1 130.6 7.5 6.0 7.4 6 6 A V E -AB 63 90A 7 57,-2.5 57,-1.8 -2,-0.5 2,-0.5 -0.988 4.5-164.1-110.8 120.0 8.1 9.3 5.6 7 7 A N E -AB 62 89A 47 82,-3.2 82,-1.9 -2,-0.5 2,-0.4 -0.908 9.7-173.3-109.1 122.7 8.4 9.0 1.8 8 8 A I E -AB 61 88A 1 53,-2.7 53,-2.9 -2,-0.5 2,-0.5 -0.957 13.6-161.0-121.8 132.1 9.9 12.0 0.1 9 9 A V E -AB 60 87A 2 78,-2.5 77,-3.0 -2,-0.4 78,-1.5 -0.963 17.0-167.3-110.6 133.2 10.3 12.7 -3.6 10 10 A L E -AB 59 85A 0 49,-2.8 49,-2.7 -2,-0.5 75,-0.2 -0.776 37.5 -79.3-117.2 161.4 12.8 15.3 -4.6 11 11 A N > - 0 0 23 73,-2.0 3,-0.7 -2,-0.3 47,-0.1 -0.282 41.6-142.4 -50.9 120.8 13.6 17.2 -7.8 12 12 A P T 3 S+ 0 0 18 0, 0.0 -1,-0.2 0, 0.0 46,-0.1 0.518 89.0 69.6 -65.9 -15.1 15.6 14.7 -9.9 13 13 A N T 3 S+ 0 0 108 46,-0.0 2,-0.2 2,-0.0 -2,-0.1 0.109 70.9 125.9 -94.6 20.7 18.0 17.3 -11.3 14 14 A L < - 0 0 32 -3,-0.7 2,-0.1 70,-0.1 -4,-0.0 -0.584 57.8-124.2 -81.4 148.5 19.9 18.1 -8.1 15 15 A D > - 0 0 103 -2,-0.2 4,-2.6 1,-0.1 3,-0.3 -0.443 34.0-104.8 -70.2 167.2 23.7 18.0 -7.7 16 16 A Q H > S+ 0 0 178 1,-0.3 4,-2.4 2,-0.2 5,-0.2 0.845 123.3 55.9 -65.5 -32.2 25.1 15.9 -4.9 17 17 A S H > S+ 0 0 85 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.912 110.0 41.7 -59.0 -51.4 25.8 19.2 -3.1 18 18 A Q H > S+ 0 0 82 -3,-0.3 4,-2.3 2,-0.2 -2,-0.2 0.883 114.2 53.0 -65.1 -43.0 22.2 20.4 -3.3 19 19 A L H X S+ 0 0 19 -4,-2.6 4,-2.4 2,-0.2 5,-0.2 0.935 107.7 50.7 -57.6 -49.0 20.9 16.9 -2.4 20 20 A A H X S+ 0 0 51 -4,-2.4 4,-1.9 -5,-0.3 -2,-0.2 0.924 109.9 51.4 -58.6 -40.5 23.1 16.7 0.7 21 21 A L H X S+ 0 0 85 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.915 107.9 51.0 -62.6 -47.4 21.7 20.1 1.7 22 22 A E H X S+ 0 0 4 -4,-2.3 4,-2.2 1,-0.2 -1,-0.2 0.889 109.4 50.8 -59.4 -42.1 18.1 19.0 1.3 23 23 A K H X S+ 0 0 57 -4,-2.4 4,-2.3 1,-0.2 -1,-0.2 0.866 109.0 52.5 -63.4 -35.6 18.7 15.9 3.5 24 24 A E H X S+ 0 0 138 -4,-1.9 4,-2.1 -5,-0.2 -2,-0.2 0.900 110.0 47.7 -66.2 -40.4 20.3 18.2 6.1 25 25 A I H X S+ 0 0 37 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.907 110.4 52.6 -63.7 -45.6 17.2 20.4 6.1 26 26 A I H X S+ 0 0 7 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.944 110.5 47.1 -56.6 -51.1 14.9 17.4 6.3 27 27 A Q H X S+ 0 0 65 -4,-2.3 4,-2.5 2,-0.2 -1,-0.2 0.887 111.6 50.2 -57.3 -44.3 16.8 16.0 9.4 28 28 A R H X S+ 0 0 167 -4,-2.1 4,-2.5 1,-0.2 -1,-0.2 0.912 111.8 48.5 -62.4 -43.7 16.8 19.4 11.2 29 29 A A H X S+ 0 0 10 -4,-2.5 4,-1.5 2,-0.2 -2,-0.2 0.944 110.9 50.0 -61.2 -42.2 13.0 19.7 10.6 30 30 A A H ><>S+ 0 0 6 -4,-2.5 5,-2.6 1,-0.2 3,-0.6 0.951 113.2 46.2 -62.5 -46.2 12.3 16.2 11.9 31 31 A E H ><5S+ 0 0 105 -4,-2.5 3,-1.6 1,-0.2 -1,-0.2 0.875 108.5 56.4 -61.0 -36.8 14.4 16.9 15.0 32 32 A N H 3<5S+ 0 0 108 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.747 107.7 48.7 -67.8 -26.3 12.7 20.3 15.5 33 33 A Y T <<5S- 0 0 41 -4,-1.5 -1,-0.3 -3,-0.6 -2,-0.2 0.195 126.9 -97.6 -96.8 13.0 9.3 18.6 15.5 34 34 A G T < 5S+ 0 0 34 -3,-1.6 2,-0.3 1,-0.2 -3,-0.2 0.539 71.7 146.3 87.2 11.0 10.4 15.9 18.0 35 35 A A < - 0 0 7 -5,-2.6 2,-0.6 -6,-0.2 32,-0.2 -0.583 42.4-145.1 -84.4 144.9 11.3 12.9 15.8 36 36 A R E -C 66 0A 127 30,-2.9 30,-2.1 -2,-0.3 2,-0.8 -0.934 21.7-140.1 -99.4 119.4 14.0 10.4 16.4 37 37 A V E +C 65 0A 34 -2,-0.6 28,-0.2 28,-0.2 3,-0.1 -0.766 28.0 173.5 -82.2 110.9 15.3 9.5 12.9 38 38 A E E + 0 0 59 26,-2.8 2,-0.3 -2,-0.8 27,-0.2 0.789 61.4 1.6 -91.3 -28.1 15.9 5.7 13.1 39 39 A K E -C 64 0A 63 25,-1.2 25,-2.3 2,-0.0 2,-0.4 -0.980 54.9-166.1-161.3 142.0 16.8 4.9 9.5 40 40 A V E -C 63 0A 57 -2,-0.3 2,-0.4 23,-0.2 23,-0.2 -0.991 7.9-171.6-131.4 127.4 17.3 6.8 6.2 41 41 A E E -C 62 0A 84 21,-2.9 21,-2.2 -2,-0.4 2,-0.8 -0.981 17.3-147.5-122.3 130.8 17.5 5.1 2.8 42 42 A E E +C 61 0A 80 -2,-0.4 19,-0.2 19,-0.2 -2,-0.0 -0.909 20.4 177.8 -89.3 105.2 18.4 6.9 -0.4 43 43 A L E - 0 0 82 17,-2.0 2,-0.2 -2,-0.8 18,-0.2 0.834 25.2-155.3 -78.7 -38.1 16.3 4.9 -3.0 44 44 A G E +C 60 0A 10 16,-1.6 16,-3.1 2,-0.0 2,-0.3 -0.585 41.7 2.1 97.8-160.4 17.3 7.0 -6.0 45 45 A L E +C 59 0A 105 14,-0.2 2,-0.3 -2,-0.2 14,-0.2 -0.502 61.1 164.0 -77.9 130.0 15.6 7.7 -9.3 46 46 A R E -C 58 0A 138 12,-2.0 12,-2.3 -2,-0.3 2,-0.5 -0.973 41.9-108.0-136.3 155.4 12.1 6.2 -10.1 47 47 A R E -C 57 0A 195 -2,-0.3 10,-0.3 10,-0.2 2,-0.1 -0.703 42.8-127.1 -81.1 126.1 9.4 7.0 -12.7 48 48 A L E - 0 0 14 8,-2.6 -1,-0.1 -2,-0.5 4,-0.0 -0.351 11.5-121.2 -76.5 156.0 6.5 8.7 -10.9 49 49 A A E S+ 0 0 93 1,-0.3 -1,-0.1 -2,-0.1 8,-0.0 0.771 102.9 6.3 -66.4 -27.4 2.9 7.4 -11.2 50 50 A Y E S- 0 0 136 5,-0.1 -1,-0.3 6,-0.0 5,-0.1 -0.960 95.3 -94.1-151.3 146.3 2.1 10.9 -12.6 51 51 A P E - 0 0 60 0, 0.0 2,-0.4 0, 0.0 3,-0.2 -0.253 32.7-158.0 -65.2 142.3 4.4 13.8 -13.5 52 52 A I E > S-C 55 0A 31 3,-2.1 3,-2.2 1,-0.2 5,-0.2 -0.986 78.1 -3.2-124.4 126.9 5.1 16.5 -10.9 53 53 A A T 3 S- 0 0 72 -2,-0.4 -1,-0.2 1,-0.3 33,-0.0 0.926 129.4 -65.0 58.9 37.3 6.2 20.0 -12.0 54 54 A K T 3 S+ 0 0 165 -3,-0.2 -1,-0.3 1,-0.2 0, 0.0 0.636 112.1 118.4 60.8 15.3 6.2 18.5 -15.5 55 55 A D E < - C 0 52A 43 -3,-2.2 -3,-2.1 1,-0.1 -1,-0.2 -0.976 53.7-155.0-110.2 131.5 9.1 16.0 -14.6 56 56 A P E S+ 0 0 63 0, 0.0 -8,-2.6 0, 0.0 2,-0.3 0.450 74.4 51.9 -86.3 -1.1 8.1 12.3 -14.9 57 57 A Q E - C 0 47A 74 -10,-0.3 2,-0.3 -5,-0.2 -10,-0.2 -0.889 61.2-169.9-130.8 168.7 10.7 11.1 -12.5 58 58 A G E - C 0 46A 0 -12,-2.3 -12,-2.0 -2,-0.3 2,-0.6 -0.965 29.4-112.8-149.4 163.0 11.8 12.0 -8.9 59 59 A Y E -AC 10 45A 53 -49,-2.7 -49,-2.8 -2,-0.3 2,-0.4 -0.913 40.6-142.8 -99.6 120.3 14.7 11.2 -6.5 60 60 A F E +AC 9 44A 17 -16,-3.1 -17,-2.0 -2,-0.6 -16,-1.6 -0.734 22.0 178.7 -96.1 139.2 13.3 9.1 -3.7 61 61 A L E -AC 8 42A 1 -53,-2.9 -53,-2.7 -2,-0.4 2,-0.4 -0.925 8.3-163.7-127.5 147.8 14.2 9.2 0.0 62 62 A W E -AC 7 41A 24 -21,-2.2 -21,-2.9 -2,-0.3 2,-0.4 -0.991 5.4-173.6-132.3 137.1 12.7 7.1 2.8 63 63 A Y E -AC 6 40A 9 -57,-1.8 -57,-2.5 -2,-0.4 2,-0.5 -0.992 17.7-151.5-129.6 144.1 12.9 7.6 6.6 64 64 A Q E +AC 5 39A 2 -25,-2.3 -26,-2.8 -2,-0.4 -25,-1.2 -0.954 31.7 174.5-109.1 119.2 11.8 5.6 9.6 65 65 A V E -AC 4 37A 3 -61,-2.5 -61,-2.8 -2,-0.5 2,-0.5 -0.947 30.4-149.9-126.4 149.7 11.0 8.0 12.4 66 66 A E E +AC 3 36A 45 -30,-2.1 -30,-2.9 -2,-0.4 -63,-0.2 -0.988 43.1 140.1-111.8 119.3 9.6 7.8 16.0 67 67 A M E -A 2 0A 2 -65,-2.7 -65,-2.0 -2,-0.5 2,-0.2 -0.987 57.0 -71.8-155.5 168.5 7.7 11.0 16.9 68 68 A P > - 0 0 24 0, 0.0 3,-1.9 0, 0.0 4,-0.4 -0.436 37.4-137.2 -68.2 132.1 4.7 12.4 18.6 69 69 A E G > S+ 0 0 118 1,-0.3 3,-1.1 -2,-0.2 4,-0.5 0.828 100.0 63.5 -56.7 -33.8 1.5 11.8 16.6 70 70 A D G 3 S+ 0 0 116 1,-0.2 -1,-0.3 2,-0.1 4,-0.2 0.567 105.1 45.7 -71.9 -8.9 0.2 15.3 17.2 71 71 A R G <> S+ 0 0 92 -3,-1.9 4,-2.1 2,-0.1 -1,-0.2 0.371 84.2 92.9-107.5 -5.6 3.1 16.9 15.3 72 72 A V H <> S+ 0 0 19 -3,-1.1 4,-2.5 -4,-0.4 5,-0.2 0.935 86.3 48.3 -59.9 -45.9 3.2 14.6 12.2 73 73 A N H > S+ 0 0 105 -4,-0.5 4,-2.1 1,-0.2 -1,-0.2 0.905 109.9 52.5 -64.1 -36.6 1.0 16.9 10.1 74 74 A D H > S+ 0 0 70 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.891 109.4 50.2 -65.7 -39.1 3.0 20.0 11.0 75 75 A L H X S+ 0 0 6 -4,-2.1 4,-2.9 2,-0.2 5,-0.2 0.950 109.1 50.3 -63.0 -47.4 6.2 18.2 9.9 76 76 A A H X S+ 0 0 5 -4,-2.5 4,-1.8 1,-0.2 -2,-0.2 0.930 112.0 48.9 -55.9 -40.8 4.7 17.2 6.6 77 77 A R H X S+ 0 0 145 -4,-2.1 4,-0.7 1,-0.2 -1,-0.2 0.910 110.0 50.5 -65.1 -43.6 3.6 20.7 6.0 78 78 A E H >< S+ 0 0 81 -4,-2.5 3,-0.8 1,-0.2 -1,-0.2 0.904 111.5 49.4 -62.8 -38.7 7.0 22.1 6.8 79 79 A L H >< S+ 0 0 9 -4,-2.9 3,-1.1 1,-0.2 -1,-0.2 0.826 104.2 58.4 -67.7 -36.3 8.7 19.6 4.4 80 80 A R H 3< S+ 0 0 126 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.575 92.1 69.4 -70.4 -13.1 6.4 20.4 1.5 81 81 A I T << S+ 0 0 117 -3,-0.8 2,-0.3 -4,-0.7 -1,-0.2 0.488 72.7 96.6 -83.2 -10.6 7.3 24.1 1.4 82 82 A R S X S- 0 0 90 -3,-1.1 3,-1.4 -4,-0.2 -60,-0.0 -0.708 78.1-133.6 -75.7 140.3 10.9 23.6 0.2 83 83 A D T 3 S+ 0 0 157 -2,-0.3 -1,-0.1 1,-0.3 -3,-0.0 0.790 102.0 54.9 -69.7 -29.8 10.8 24.0 -3.6 84 84 A N T 3 S+ 0 0 35 -74,-0.1 -73,-2.0 -73,-0.1 2,-0.7 0.476 85.7 91.5 -77.9 -8.7 12.9 20.9 -4.3 85 85 A V E < +B 10 0A 13 -3,-1.4 -75,-0.3 -75,-0.2 3,-0.1 -0.868 50.8 175.6 -86.7 117.5 10.5 18.6 -2.4 86 86 A R E + 0 0 55 -77,-3.0 2,-0.3 -2,-0.7 -76,-0.2 0.691 63.1 6.2 -94.9 -28.4 7.9 17.4 -5.0 87 87 A R E -B 9 0A 56 -78,-1.5 -78,-2.5 -35,-0.1 2,-0.4 -0.971 54.5-170.6-157.6 140.3 5.9 15.0 -2.8 88 88 A V E +B 8 0A 9 -2,-0.3 2,-0.4 -80,-0.2 -80,-0.2 -1.000 9.2 174.8-130.9 132.5 5.7 13.9 0.8 89 89 A M E -B 7 0A 93 -82,-1.9 -82,-3.2 -2,-0.4 2,-0.5 -0.982 9.4-165.7-139.1 132.1 3.6 10.9 2.1 90 90 A V E +B 6 0A 40 -2,-0.4 2,-0.3 -84,-0.2 -84,-0.2 -0.947 11.7 173.9-119.6 130.3 3.6 9.8 5.7 91 91 A V E -B 5 0A 55 -86,-2.5 -86,-3.3 -2,-0.5 2,-0.2 -0.956 38.7 -97.0-131.4 156.9 2.2 6.4 6.7 92 92 A K E -B 4 0A 123 -2,-0.3 -88,-0.3 -88,-0.2 2,-0.1 -0.461 45.8-109.0 -68.5 140.6 2.2 4.5 10.0 93 93 A S + 0 0 19 -90,-2.4 -90,-0.1 -2,-0.2 -1,-0.1 -0.429 39.3 173.4 -73.9 129.1 5.0 1.9 10.2 94 94 A Q S S+ 0 0 170 1,-0.1 -1,-0.2 -3,-0.1 -2,-0.0 0.655 78.0 22.9-101.0 -40.9 3.5 -1.6 10.0 95 95 A E S S- 0 0 170 2,-0.0 -1,-0.1 0, 0.0 2,-0.0 -0.751 86.6-161.0-131.4 74.3 6.8 -3.7 9.8 96 96 A P 0 0 72 0, 0.0 -91,-0.0 0, 0.0 -32,-0.0 -0.288 360.0 360.0 -63.7 152.0 9.5 -1.6 11.4 97 97 A F 0 0 163 -58,-0.0 -59,-0.0 -2,-0.0 -33,-0.0 -0.653 360.0 360.0 -80.3 360.0 13.2 -2.1 10.9