==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-JUN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/CELL CYCLE 29-JAN-12 2LP0 . COMPND 2 MOLECULE: HOMEOBOX PROTEIN HOX-C9; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.LIU,B.ZHOU,Z.XU,G.ZHU . 80 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6691.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 57.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 42.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 17 A T 0 0 58 0, 0.0 75,-0.0 0, 0.0 7,-0.0 0.000 360.0 360.0 360.0 108.3 6.7 5.2 -6.4 2 18 A R + 0 0 212 4,-0.1 2,-0.5 5,-0.1 4,-0.1 0.032 360.0 94.0-120.1 23.4 10.5 5.0 -6.7 3 19 A K S S- 0 0 150 2,-0.2 2,-1.7 3,-0.1 70,-0.1 -0.965 107.0 -47.2-122.9 113.8 11.2 6.4 -3.2 4 20 A K S S+ 0 0 86 -2,-0.5 68,-0.0 68,-0.0 65,-0.0 -0.482 119.3 74.5 69.5 -86.8 11.7 3.9 -0.3 5 21 A R S S- 0 0 4 -2,-1.7 66,-0.2 1,-0.1 -2,-0.2 -0.201 96.0 -98.9 -58.1 144.2 8.7 1.7 -1.0 6 22 A C - 0 0 56 64,-0.5 2,-0.6 65,-0.3 -1,-0.1 -0.399 42.0-101.8 -67.3 140.6 8.9 -0.7 -3.9 7 23 A P - 0 0 56 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.535 38.1-136.4 -68.1 110.3 7.1 0.4 -7.1 8 24 A Y - 0 0 39 -2,-0.6 -3,-0.0 1,-0.1 2,-0.0 -0.430 18.2-121.8 -69.7 140.6 3.8 -1.4 -7.3 9 25 A T > - 0 0 91 -2,-0.1 4,-2.8 1,-0.1 5,-0.2 -0.181 26.3-102.0 -75.1 171.9 2.9 -2.9 -10.7 10 26 A K H > S+ 0 0 178 2,-0.2 4,-3.4 1,-0.2 5,-0.2 0.948 122.4 49.5 -61.3 -49.7 -0.3 -2.0 -12.6 11 27 A Y H > S+ 0 0 177 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.901 114.0 46.0 -56.0 -45.0 -2.1 -5.2 -11.6 12 28 A Q H > S+ 0 0 28 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.947 115.6 45.0 -64.2 -50.1 -1.2 -4.6 -7.9 13 29 A T H X S+ 0 0 35 -4,-2.8 4,-2.7 1,-0.2 -2,-0.2 0.910 113.0 51.4 -61.3 -44.1 -2.2 -1.0 -8.0 14 30 A L H X S+ 0 0 106 -4,-3.4 4,-3.1 -5,-0.2 5,-0.2 0.925 111.4 46.7 -60.9 -46.6 -5.4 -1.7 -9.9 15 31 A E H X S+ 0 0 56 -4,-2.3 4,-2.9 -5,-0.2 5,-0.2 0.953 115.7 44.7 -61.4 -50.2 -6.5 -4.4 -7.5 16 32 A L H X S+ 0 0 0 -4,-2.4 4,-2.1 1,-0.2 -1,-0.2 0.872 115.1 50.2 -61.7 -38.1 -5.8 -2.3 -4.4 17 33 A E H X S+ 0 0 59 -4,-2.7 4,-2.5 -5,-0.2 -2,-0.2 0.943 113.9 42.6 -65.8 -49.7 -7.4 0.6 -6.0 18 34 A K H X S+ 0 0 122 -4,-3.1 4,-2.8 2,-0.2 5,-0.3 0.915 114.6 50.8 -65.4 -43.3 -10.6 -1.2 -7.0 19 35 A E H X S+ 0 0 38 -4,-2.9 4,-3.2 -5,-0.2 -1,-0.2 0.915 114.7 42.8 -61.5 -44.4 -10.8 -3.0 -3.6 20 36 A F H < S+ 0 0 19 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.884 116.3 47.7 -70.2 -39.8 -10.4 0.2 -1.6 21 37 A L H < S+ 0 0 113 -4,-2.5 3,-0.3 -5,-0.2 -2,-0.2 0.894 121.0 37.6 -67.5 -39.8 -12.8 2.2 -3.9 22 38 A F H < S+ 0 0 153 -4,-2.8 2,-0.5 1,-0.3 -2,-0.2 0.935 133.0 23.9 -75.9 -49.4 -15.4 -0.6 -3.7 23 39 A N < - 0 0 47 -4,-3.2 -1,-0.3 -5,-0.3 -2,-0.1 -0.888 62.8-173.3-124.6 96.0 -14.9 -1.6 -0.1 24 40 A M S S+ 0 0 133 -2,-0.5 2,-0.4 -3,-0.3 -1,-0.1 0.725 79.5 41.8 -59.3 -23.5 -13.4 1.3 1.9 25 41 A Y S S- 0 0 193 -6,-0.1 2,-0.3 -3,-0.1 -1,-0.0 -0.957 70.4-173.5-128.8 148.7 -13.1 -1.2 4.8 26 42 A L - 0 0 19 -2,-0.4 2,-0.2 4,-0.0 -2,-0.0 -0.863 21.7-112.6-134.8 167.5 -12.0 -4.8 4.9 27 43 A T > - 0 0 77 -2,-0.3 4,-2.6 1,-0.1 5,-0.2 -0.464 33.2-105.5 -96.6 170.6 -11.9 -7.7 7.3 28 44 A R H > S+ 0 0 209 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.943 120.5 41.8 -60.8 -51.5 -8.8 -9.4 8.7 29 45 A D H > S+ 0 0 114 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.897 115.1 50.4 -64.8 -42.7 -9.2 -12.5 6.6 30 46 A R H > S+ 0 0 104 2,-0.2 4,-3.0 1,-0.2 5,-0.2 0.914 111.9 47.8 -63.0 -42.4 -10.0 -10.6 3.5 31 47 A R H X S+ 0 0 56 -4,-2.6 4,-2.6 1,-0.2 -2,-0.2 0.907 112.7 48.9 -64.3 -41.4 -7.0 -8.3 4.0 32 48 A Y H X S+ 0 0 96 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.882 112.6 49.1 -64.9 -38.0 -4.8 -11.4 4.6 33 49 A E H X S+ 0 0 115 -4,-2.6 4,-3.3 2,-0.2 5,-0.2 0.948 111.5 47.1 -66.1 -51.0 -6.3 -12.9 1.4 34 50 A V H X S+ 0 0 11 -4,-3.0 4,-2.0 1,-0.2 -2,-0.2 0.919 115.4 47.0 -56.0 -44.9 -5.7 -9.8 -0.7 35 51 A A H <>S+ 0 0 0 -4,-2.6 5,-3.2 2,-0.2 -1,-0.2 0.903 112.3 50.2 -63.2 -42.1 -2.2 -9.6 0.7 36 52 A R H ><5S+ 0 0 172 -4,-2.7 3,-1.6 3,-0.2 -2,-0.2 0.920 109.6 50.2 -62.0 -46.9 -1.7 -13.3 0.1 37 53 A V H 3<5S+ 0 0 95 -4,-3.3 -1,-0.2 1,-0.3 -2,-0.2 0.868 111.0 49.4 -59.8 -36.4 -2.9 -13.0 -3.5 38 54 A L T 3<5S- 0 0 25 -4,-2.0 -1,-0.3 -5,-0.2 -2,-0.2 0.395 113.8-122.6 -84.4 3.1 -0.5 -10.1 -3.9 39 55 A N T < 5S+ 0 0 144 -3,-1.6 2,-0.2 1,-0.2 -3,-0.2 0.857 77.6 102.2 57.1 38.0 2.3 -12.3 -2.5 40 56 A L S > - 0 0 83 -2,-0.2 4,-0.9 -3,-0.1 3,-0.8 -0.434 37.1-113.2 -88.2 164.2 2.1 -8.9 3.9 42 58 A E H 3> S+ 0 0 64 1,-0.3 4,-3.1 2,-0.2 3,-0.3 0.819 116.9 66.5 -64.6 -30.1 -1.1 -7.6 5.3 43 59 A R H 3> S+ 0 0 113 1,-0.2 4,-2.9 2,-0.2 5,-0.4 0.849 92.2 60.4 -58.7 -35.9 0.9 -4.5 6.2 44 60 A Q H <> S+ 0 0 1 -3,-0.8 4,-1.5 1,-0.2 -1,-0.2 0.913 113.0 36.7 -60.0 -41.6 1.3 -3.8 2.5 45 61 A V H X S+ 0 0 0 -4,-0.9 4,-2.3 -3,-0.3 5,-0.2 0.923 116.3 52.7 -76.3 -46.2 -2.5 -3.6 2.1 46 62 A K H X S+ 0 0 117 -4,-3.1 4,-1.4 1,-0.2 -2,-0.2 0.907 116.1 39.4 -56.4 -47.1 -3.1 -1.9 5.4 47 63 A I H X S+ 0 0 31 -4,-2.9 4,-3.1 2,-0.2 -1,-0.2 0.837 111.0 58.1 -75.5 -33.8 -0.6 0.9 4.7 48 64 A W H X S+ 0 0 10 -4,-1.5 4,-1.7 -5,-0.4 -2,-0.2 0.926 108.6 46.2 -62.4 -42.7 -1.5 1.2 1.0 49 65 A F H X S+ 0 0 14 -4,-2.3 4,-1.4 1,-0.2 -1,-0.2 0.889 116.3 44.6 -66.2 -39.7 -5.1 2.0 2.0 50 66 A Q H X S+ 0 0 82 -4,-1.4 4,-2.9 -5,-0.2 5,-0.2 0.865 108.9 56.9 -72.1 -37.1 -4.0 4.4 4.6 51 67 A N H X S+ 0 0 3 -4,-3.1 4,-1.9 1,-0.2 -2,-0.2 0.856 104.5 53.8 -62.2 -35.6 -1.4 6.0 2.3 52 68 A R H X S+ 0 0 72 -4,-1.7 4,-1.4 2,-0.2 -1,-0.2 0.921 110.8 45.3 -64.5 -44.5 -4.3 6.7 -0.1 53 69 A R H X S+ 0 0 91 -4,-1.4 4,-2.1 2,-0.2 3,-0.3 0.927 113.7 48.3 -65.1 -46.2 -6.2 8.5 2.6 54 70 A M H X>S+ 0 0 35 -4,-2.9 4,-3.0 1,-0.2 5,-0.6 0.835 109.8 54.1 -64.3 -30.4 -3.1 10.4 3.7 55 71 A K H <5S+ 0 0 67 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.815 109.2 48.3 -72.2 -30.7 -2.4 11.3 0.1 56 72 A M H <5S+ 0 0 134 -4,-1.4 -2,-0.2 -3,-0.3 -1,-0.2 0.846 119.1 38.6 -75.9 -37.9 -5.9 12.7 -0.2 57 73 A K H <5S+ 0 0 155 -4,-2.1 3,-0.5 -5,-0.1 -2,-0.2 0.932 129.5 26.1 -79.3 -52.0 -5.6 14.7 3.0 58 74 A K T <5S+ 0 0 65 -4,-3.0 2,-1.8 1,-0.2 -3,-0.2 0.985 130.7 35.0 -77.6 -68.8 -2.0 15.9 2.7 59 75 A M < 0 0 82 -5,-0.6 -1,-0.2 22,-0.1 -2,-0.1 -0.307 360.0 360.0 -84.1 53.9 -1.2 16.0 -1.0 60 76 A N 0 0 185 -2,-1.8 -4,-0.1 -3,-0.5 -3,-0.1 -0.287 360.0 360.0 -58.7 360.0 -4.8 17.0 -1.8 61 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 62 171 B N 0 0 220 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 13.4 19.1 -13.1 -2.8 63 172 B Q - 0 0 91 1,-0.0 0, 0.0 2,-0.0 0, 0.0 -0.978 360.0-151.2-152.8 162.0 18.9 -11.4 0.6 64 173 B E S S+ 0 0 186 -2,-0.3 -1,-0.0 2,-0.1 0, 0.0 -0.018 75.0 92.1-125.0 26.4 16.6 -10.8 3.6 65 174 B F + 0 0 180 1,-0.1 3,-0.0 2,-0.1 -2,-0.0 0.935 45.9 102.6 -81.2 -80.7 17.9 -7.4 4.6 66 175 B D S S- 0 0 77 1,-0.1 2,-0.2 4,-0.1 -2,-0.1 -0.103 84.1 -96.8 36.8-107.4 15.7 -4.8 2.9 67 176 B S >> - 0 0 41 1,-0.0 3,-1.5 0, 0.0 4,-0.9 -0.746 12.2-110.0 165.8 149.1 13.4 -3.7 5.7 68 177 B E T 34 S+ 0 0 142 1,-0.3 4,-0.1 -2,-0.2 -2,-0.1 0.644 126.8 36.8 -67.2 -13.2 9.9 -4.5 7.0 69 178 B E T 34 S+ 0 0 66 2,-0.1 -1,-0.3 1,-0.1 5,-0.1 0.169 96.9 83.7-122.0 11.0 9.0 -1.0 5.8 70 179 B E T <4 S+ 0 0 59 -3,-1.5 -64,-0.5 1,-0.1 3,-0.3 0.843 100.9 35.9 -81.9 -36.0 11.1 -1.1 2.7 71 180 B T S < S+ 0 0 51 -4,-0.9 2,-0.4 1,-0.3 -65,-0.3 0.733 131.4 35.4 -84.8 -25.9 8.5 -3.0 0.8 72 181 B V S S+ 0 0 3 -5,-0.2 -1,-0.3 -67,-0.1 2,-0.3 -0.780 76.5 174.0-133.5 85.8 5.8 -1.0 2.6 73 182 B E - 0 0 12 -2,-0.4 3,-0.2 -3,-0.3 -3,-0.1 -0.668 17.7-164.0 -91.5 149.2 6.8 2.6 3.4 74 183 B D S S+ 0 0 71 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.0 -0.354 72.8 74.1-129.3 51.1 4.4 5.0 4.9 75 184 B S + 0 0 70 3,-0.0 3,-0.2 0, 0.0 -1,-0.1 0.193 53.4 110.4-144.2 12.2 6.0 8.4 4.2 76 185 B L S S+ 0 0 40 1,-0.2 2,-0.8 -3,-0.2 3,-0.2 0.762 79.1 56.7 -62.7 -26.0 5.4 8.8 0.5 77 186 B V + 0 0 2 1,-0.2 -1,-0.2 -19,-0.0 -19,-0.1 -0.743 59.5 136.3-110.2 81.7 3.0 11.6 1.4 78 187 B E + 0 0 132 -2,-0.8 2,-1.0 -3,-0.2 -1,-0.2 0.634 43.2 99.3 -97.6 -18.7 5.1 14.1 3.4 79 188 B D + 0 0 67 -3,-0.2 -1,-0.0 1,-0.2 -3,-0.0 -0.590 39.7 160.8 -75.1 100.9 3.7 17.1 1.6 80 189 B S 0 0 58 -2,-1.0 -20,-0.3 1,-0.1 -1,-0.2 0.948 360.0 360.0 -83.4 -60.6 1.1 18.5 4.0 81 190 B E 0 0 224 -22,-0.1 -1,-0.1 0, 0.0 -22,-0.1 -0.263 360.0 360.0 47.4 360.0 0.7 22.1 2.8