==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=17-JUN-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 02-FEB-12 2LP6 . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L35AE; . SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; . AUTHOR D.A.SNYDER,J.M.ARAMINI,B.YU,Y.J.HUANG,R.XIAO,J.R.CORT,R.SHAS . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6009.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 74.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 39 42.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 17 18.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 193 0, 0.0 87,-2.8 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 132.7 -13.4 5.9 0.8 2 2 A R E -A 87 0A 158 85,-0.2 2,-0.4 41,-0.0 85,-0.2 -0.999 360.0-147.9-125.1 127.6 -11.1 3.1 -0.5 3 3 A I E -A 86 0A 23 83,-2.0 83,-2.7 -2,-0.4 2,-0.4 -0.804 13.6-132.4 -97.1 132.6 -8.2 4.0 -2.9 4 4 A K E +A 85 0A 122 -2,-0.4 23,-1.9 81,-0.2 24,-0.7 -0.705 34.0 171.0 -89.4 129.6 -7.1 1.5 -5.5 5 5 A G E -AB 84 26A 0 79,-1.6 79,-1.9 -2,-0.4 2,-0.5 -0.895 30.1-129.0-136.6 165.0 -3.3 0.9 -5.8 6 6 A V E -AB 83 25A 22 19,-2.0 19,-2.4 -2,-0.3 2,-0.9 -0.977 22.1-130.5-118.6 120.6 -0.8 -1.4 -7.5 7 7 A V E + B 0 24A 0 75,-2.7 74,-2.2 -2,-0.5 75,-0.3 -0.609 26.3 179.4 -68.9 102.9 2.0 -3.2 -5.5 8 8 A L E - 0 0 83 15,-2.4 2,-0.3 -2,-0.9 -1,-0.2 0.837 66.5 -6.1 -70.2 -37.3 5.1 -2.3 -7.5 9 9 A S E - B 0 23A 52 14,-1.2 14,-2.2 -3,-0.1 2,-0.3 -0.981 59.7-140.5-157.0 158.1 7.4 -4.2 -5.1 10 10 A Y E - B 0 22A 40 -2,-0.3 2,-0.4 12,-0.2 12,-0.3 -0.824 8.9-153.6-117.0 162.2 7.6 -6.0 -1.7 11 11 A R E - B 0 21A 139 10,-2.4 10,-1.7 -2,-0.3 2,-0.5 -0.987 21.0-125.7-135.4 128.3 10.3 -6.1 1.0 12 12 A R - 0 0 201 -2,-0.4 2,-0.9 8,-0.2 8,-0.1 -0.631 26.7-124.4 -74.0 121.3 10.8 -9.0 3.4 13 13 A S + 0 0 12 -2,-0.5 7,-0.1 1,-0.2 -1,-0.1 -0.591 36.5 170.4 -69.5 101.1 10.6 -7.8 7.0 14 14 A K + 0 0 147 -2,-0.9 -1,-0.2 5,-0.1 4,-0.1 0.408 50.7 100.2 -88.6 -2.4 13.9 -9.0 8.5 15 15 A E S S- 0 0 73 2,-0.3 -2,-0.0 4,-0.1 0, 0.0 -0.134 92.1-105.8 -76.8 173.5 13.1 -6.9 11.6 16 16 A N S S+ 0 0 164 1,-0.2 2,-1.4 2,-0.1 -1,-0.1 0.914 115.5 67.8 -64.0 -44.9 11.7 -8.1 15.0 17 17 A Q S S- 0 0 144 2,-0.1 2,-1.5 1,-0.1 -2,-0.3 -0.675 84.7-153.9 -76.5 89.2 8.4 -6.6 14.0 18 18 A H + 0 0 122 -2,-1.4 2,-0.4 -4,-0.1 -2,-0.1 -0.584 36.1 149.6 -70.7 88.0 7.6 -9.0 11.1 19 19 A N - 0 0 34 -2,-1.5 53,-0.2 55,-0.1 2,-0.2 -0.942 48.4-126.4-127.4 105.7 5.4 -6.6 9.0 20 20 A N E - C 0 71A 10 51,-0.9 51,-1.8 -2,-0.4 2,-0.2 -0.335 27.5-148.7 -63.1 118.8 5.6 -7.2 5.3 21 21 A V E -BC 11 70A 5 -10,-1.7 -10,-2.4 49,-0.2 2,-0.3 -0.597 16.7-175.9 -90.3 149.4 6.5 -3.9 3.5 22 22 A M E -BC 10 69A 0 47,-1.1 47,-1.5 -12,-0.3 2,-1.0 -0.989 30.4-130.9-149.3 140.9 5.3 -3.0 0.0 23 23 A I E -BC 9 68A 30 -14,-2.2 -15,-2.4 -2,-0.3 -14,-1.2 -0.824 37.1-170.8 -86.3 98.0 5.9 -0.1 -2.4 24 24 A I E -BC 7 67A 0 43,-2.7 43,-1.2 -2,-1.0 -17,-0.2 -0.821 16.9-158.6 -95.0 133.2 2.2 0.7 -3.4 25 25 A K E -B 6 0A 80 -19,-2.4 -19,-2.0 -2,-0.4 2,-0.4 -0.922 16.5-147.5-107.6 97.0 1.5 3.1 -6.3 26 26 A P E -B 5 0A 0 0, 0.0 -21,-0.3 0, 0.0 3,-0.2 -0.586 5.3-145.0 -68.5 122.4 -2.2 4.3 -5.6 27 27 A L S S+ 0 0 81 -23,-1.9 -22,-0.1 -2,-0.4 3,-0.1 0.765 101.4 41.3 -58.6 -29.6 -3.8 5.0 -9.1 28 28 A D S S+ 0 0 107 -24,-0.7 2,-0.8 1,-0.2 -1,-0.2 0.733 107.0 67.4 -88.5 -28.5 -5.7 8.0 -7.6 29 29 A V + 0 0 3 -25,-0.2 -1,-0.2 -3,-0.2 38,-0.1 -0.837 45.7 142.6-104.8 99.7 -2.8 9.4 -5.5 30 30 A N + 0 0 95 -2,-0.8 2,-0.3 -5,-0.1 35,-0.2 0.170 56.1 79.9-119.4 12.1 0.0 10.7 -7.8 31 31 A S S > S- 0 0 47 34,-0.2 4,-1.3 33,-0.1 33,-0.1 -0.926 76.8-131.5-122.4 149.1 0.9 13.7 -5.5 32 32 A R H > S+ 0 0 140 -2,-0.3 4,-2.2 31,-0.3 5,-0.1 0.845 108.3 53.5 -63.9 -36.9 3.0 13.9 -2.3 33 33 A E H > S+ 0 0 137 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.932 108.2 48.0 -65.3 -48.7 0.3 15.8 -0.4 34 34 A E H 4 S+ 0 0 78 1,-0.2 -1,-0.2 2,-0.2 -2,-0.2 0.770 116.8 45.2 -63.2 -30.4 -2.5 13.3 -1.2 35 35 A A H >< S+ 0 0 0 -4,-1.3 3,-1.2 2,-0.1 -1,-0.2 0.822 107.7 56.5 -79.7 -36.2 -0.1 10.5 -0.0 36 36 A S H >< S+ 0 0 74 -4,-2.2 3,-0.9 1,-0.3 -2,-0.2 0.755 101.7 56.0 -73.4 -27.5 1.1 12.3 3.1 37 37 A K T 3< S+ 0 0 141 -4,-1.5 -1,-0.3 1,-0.2 -2,-0.1 0.448 99.1 64.8 -82.1 -1.2 -2.5 12.7 4.4 38 38 A L T X + 0 0 3 -3,-1.2 3,-2.1 -5,-0.1 2,-0.6 0.349 68.3 126.3 -98.6 2.0 -2.8 8.8 4.1 39 39 A I T < S+ 0 0 60 -3,-0.9 19,-0.2 1,-0.3 -3,-0.0 -0.516 81.3 18.5 -67.9 109.6 -0.1 8.2 6.9 40 40 A G T 3 S+ 0 0 6 17,-1.2 -1,-0.3 -2,-0.6 18,-0.1 0.141 93.7 135.6 114.9 -15.8 -1.8 5.9 9.3 41 41 A R < - 0 0 24 -3,-2.1 16,-1.6 16,-0.2 2,-0.6 -0.323 59.7-109.6 -70.9 152.9 -4.6 4.7 6.9 42 42 A L E -DE 56 87A 56 45,-1.2 45,-2.7 14,-0.2 2,-0.4 -0.708 28.5-159.7 -94.9 114.6 -5.4 1.0 6.7 43 43 A V E -DE 55 86A 0 12,-1.4 12,-1.8 -2,-0.6 2,-0.7 -0.813 3.6-154.7 -97.7 131.4 -4.4 -0.8 3.5 44 44 A L E -DE 54 85A 43 41,-2.2 41,-1.7 -2,-0.4 2,-0.4 -0.909 16.7-178.3-107.7 101.3 -6.2 -4.1 2.6 45 45 A W E -DE 53 84A 0 8,-2.0 8,-2.1 -2,-0.7 2,-0.9 -0.867 26.1-130.6-100.2 140.8 -3.9 -6.3 0.4 46 46 A K E -D 52 0A 108 37,-0.7 6,-0.2 -2,-0.4 37,-0.1 -0.796 25.4-149.4 -91.7 101.1 -5.1 -9.7 -0.9 47 47 A S > - 0 0 2 4,-2.8 3,-1.9 -2,-0.9 4,-0.5 -0.379 24.2-116.5 -65.0 150.6 -2.4 -12.2 -0.2 48 48 A P T 3 S+ 0 0 85 0, 0.0 -1,-0.1 0, 0.0 29,-0.1 0.695 114.1 73.1 -57.5 -19.4 -1.8 -15.3 -2.6 49 49 A S T 3 S- 0 0 87 2,-0.2 3,-0.1 1,-0.1 28,-0.0 0.537 120.5-107.6 -71.8 -8.6 -2.8 -17.4 0.5 50 50 A G S < S+ 0 0 56 -3,-1.9 2,-0.3 1,-0.3 -1,-0.1 0.812 82.7 118.7 81.2 32.8 -6.5 -16.1 0.0 51 51 A K - 0 0 118 -4,-0.5 -4,-2.8 -6,-0.0 2,-0.8 -0.959 64.5-129.9-128.0 146.1 -6.4 -13.8 3.0 52 52 A I E -D 46 0A 113 -2,-0.3 -6,-0.2 -6,-0.2 2,-0.2 -0.859 27.9-155.4 -99.4 100.1 -6.8 -10.0 3.2 53 53 A L E -D 45 0A 3 -8,-2.1 -8,-2.0 -2,-0.8 2,-0.4 -0.564 8.0-136.6 -75.0 137.3 -3.9 -8.7 5.3 54 54 A K E +D 44 0A 83 -2,-0.2 18,-1.3 -10,-0.2 19,-0.5 -0.806 30.9 172.0 -96.9 139.3 -4.4 -5.3 7.0 55 55 A G E -DF 43 71A 4 -12,-1.8 -12,-1.4 -2,-0.4 2,-0.4 -0.805 26.1-127.6-140.8 177.4 -1.5 -2.8 6.9 56 56 A K E -DF 42 70A 111 14,-1.7 14,-2.3 -2,-0.2 2,-0.9 -0.996 22.3-123.7-139.3 126.7 -0.5 0.8 7.7 57 57 A I E + F 0 69A 1 -16,-1.6 -17,-1.2 -19,-0.4 12,-0.3 -0.612 33.8 174.8 -68.8 103.5 1.1 3.5 5.5 58 58 A V E - 0 0 71 10,-1.7 2,-0.3 -2,-0.9 -1,-0.2 0.832 63.7 -12.0 -83.8 -35.2 4.2 4.3 7.6 59 59 A R E - F 0 68A 176 9,-1.3 9,-2.1 -21,-0.1 -1,-0.3 -0.973 67.7-117.2-164.0 153.7 5.8 6.7 5.1 60 60 A V E - F 0 67A 21 -2,-0.3 2,-0.5 7,-0.2 7,-0.2 -0.395 22.2-123.9 -91.6 170.5 5.4 7.8 1.5 61 61 A H E > - F 0 66A 83 5,-2.7 5,-0.7 -2,-0.1 3,-0.4 -0.947 59.1 -61.0-122.8 103.7 7.9 7.5 -1.4 62 62 A G T 5S- 0 0 42 -2,-0.5 3,-0.2 1,-0.2 -1,-0.1 -0.133 85.5 -52.1 65.1-150.6 8.8 10.8 -3.2 63 63 A T T 5S+ 0 0 94 1,-0.1 -31,-0.3 -3,-0.1 -1,-0.2 0.495 114.1 92.2 -98.5 -9.9 6.2 13.0 -4.9 64 64 A K T 5S- 0 0 152 -3,-0.4 -2,-0.1 -33,-0.1 -1,-0.1 0.549 98.2-121.2 -62.1 -12.5 4.8 10.2 -7.1 65 65 A G T 5 + 0 0 0 1,-0.3 2,-0.4 -4,-0.3 -34,-0.2 0.420 61.5 151.4 82.3 -1.3 2.2 9.5 -4.3 66 66 A A E < - F 0 61A 3 -5,-0.7 -5,-2.7 -41,-0.2 -1,-0.3 -0.506 32.8-152.7 -65.5 119.4 3.5 6.0 -4.0 67 67 A V E -CF 24 60A 0 -43,-1.2 -43,-2.7 -2,-0.4 2,-0.6 -0.694 7.6-141.4-101.6 148.3 2.8 4.9 -0.4 68 68 A R E -CF 23 59A 73 -9,-2.1 -10,-1.7 -2,-0.3 -9,-1.3 -0.945 23.0-171.7-113.7 113.7 4.8 2.3 1.7 69 69 A A E -CF 22 57A 0 -47,-1.5 -47,-1.1 -2,-0.6 2,-0.5 -0.888 16.5-152.6-114.6 134.3 2.7 0.1 4.0 70 70 A R E -CF 21 56A 47 -14,-2.3 -14,-1.7 -2,-0.4 2,-0.5 -0.936 19.6-143.4-102.6 123.3 3.8 -2.4 6.7 71 71 A F E > -CF 20 55A 0 -51,-1.8 3,-1.7 -2,-0.5 -51,-0.9 -0.800 7.6-138.5 -99.0 126.9 1.2 -5.2 7.2 72 72 A E T 3 S+ 0 0 95 -18,-1.3 -1,-0.1 -2,-0.5 -17,-0.1 0.761 101.4 55.3 -50.3 -38.1 0.6 -6.6 10.7 73 73 A K T 3 S- 0 0 121 -19,-0.5 -1,-0.3 -53,-0.1 -54,-0.1 0.730 89.6-151.2 -75.4 -24.8 0.4 -10.3 9.6 74 74 A G < + 0 0 21 -3,-1.7 -61,-0.1 1,-0.2 -55,-0.1 0.706 35.2 159.8 63.8 24.8 3.9 -10.1 7.9 75 75 A L - 0 0 73 -55,-0.1 -1,-0.2 1,-0.1 -4,-0.1 -0.604 36.3-123.0 -86.6 136.3 2.9 -12.8 5.4 76 76 A P + 0 0 114 0, 0.0 -1,-0.1 0, 0.0 -56,-0.0 -0.082 37.0 157.1 -71.1 174.3 4.9 -13.1 2.1 77 77 A G - 0 0 29 -30,-0.1 -67,-0.0 -29,-0.1 -30,-0.0 0.268 26.1-161.6-158.8 -65.8 3.4 -12.9 -1.4 78 78 A Q + 0 0 169 1,-0.1 2,-0.1 -30,-0.0 -68,-0.0 0.767 42.5 144.4 60.3 31.8 5.7 -11.9 -4.4 79 79 A A > - 0 0 31 -70,-0.0 3,-1.5 2,-0.0 -72,-0.1 -0.103 33.7-170.7 -88.3 31.6 2.4 -11.2 -6.2 80 80 A L T 3 S+ 0 0 108 1,-0.3 -72,-0.2 -2,-0.1 -71,-0.1 0.014 70.1 28.0 -35.7 111.1 4.1 -8.1 -8.0 81 81 A G T 3 S+ 0 0 37 -74,-2.2 -1,-0.3 1,-0.3 -73,-0.1 0.292 89.5 139.6 112.4 -4.3 1.4 -6.1 -9.8 82 82 A D < - 0 0 28 -3,-1.5 -75,-2.7 -75,-0.3 2,-0.3 -0.264 50.5-112.9 -73.8 157.9 -1.4 -7.1 -7.4 83 83 A Y E -A 6 0A 125 -77,-0.2 -37,-0.7 -37,-0.1 2,-0.2 -0.731 27.3-170.5-102.1 141.4 -4.1 -4.6 -6.3 84 84 A V E -AE 5 45A 2 -79,-1.9 -79,-1.6 -2,-0.3 2,-0.4 -0.749 17.8-137.2-116.3 166.6 -4.8 -3.1 -2.8 85 85 A E E -AE 4 44A 82 -41,-1.7 -41,-2.2 -2,-0.2 2,-1.0 -0.932 13.3-152.3-128.7 109.2 -7.6 -1.0 -1.3 86 86 A I E -AE 3 43A 0 -83,-2.7 -83,-2.0 -2,-0.4 2,-0.5 -0.699 14.7-147.5 -82.4 100.1 -6.4 1.9 1.0 87 87 A V E -AE 2 42A 39 -45,-2.7 2,-1.6 -2,-1.0 -45,-1.2 -0.617 16.0-126.3 -72.8 117.6 -9.2 2.4 3.5 88 88 A L + 0 0 70 -87,-2.8 -1,-0.1 -2,-0.5 -50,-0.1 -0.575 47.5 160.6 -63.3 86.6 -9.4 6.1 4.5 89 89 A E - 0 0 79 -2,-1.6 -1,-0.2 -51,-0.1 -48,-0.1 0.961 17.3-173.5 -75.9 -63.0 -9.3 5.3 8.2 90 90 A H 0 0 145 -3,-0.2 -50,-0.1 -53,-0.1 -2,-0.1 0.992 360.0 360.0 58.3 81.1 -8.2 8.7 9.7 91 91 A H 0 0 159 0, 0.0 -51,-0.1 0, 0.0 -50,-0.0 0.744 360.0 360.0 -94.0 360.0 -7.5 8.0 13.4