==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-MAR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA/RNA BINDING PROTEIN 10-FEB-10 3LQX . COMPND 2 MOLECULE: SIGNAL RECOGNITION PARTICLE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR R.T.BATEY . 69 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4754.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 71.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 10.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 56.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A F 0 0 98 0, 0.0 2,-0.2 0, 0.0 67,-0.0 0.000 360.0 360.0 360.0 123.1 30.0 36.7 2.2 2 2 A D > - 0 0 35 28,-0.1 4,-1.2 29,-0.0 3,-0.4 -0.544 360.0 -82.5-127.7-170.3 31.1 33.1 3.1 3 3 A L H > S+ 0 0 0 25,-2.2 4,-0.9 1,-0.2 26,-0.1 0.605 121.2 63.4 -75.1 -11.6 29.7 29.6 3.4 4 4 A N H > S+ 0 0 43 24,-0.5 4,-0.7 2,-0.2 -1,-0.2 0.807 107.8 42.9 -78.0 -32.0 28.4 30.3 6.9 5 5 A D H 4 S+ 0 0 82 -3,-0.4 4,-0.3 2,-0.2 -2,-0.2 0.778 111.8 53.6 -82.0 -30.2 26.0 32.9 5.4 6 6 A F H < S+ 0 0 23 -4,-1.2 3,-0.4 1,-0.2 -2,-0.2 0.732 102.7 59.3 -76.0 -24.4 25.2 30.5 2.4 7 7 A L H < S+ 0 0 37 -4,-0.9 -1,-0.2 1,-0.2 -2,-0.2 0.842 102.8 52.4 -71.1 -35.2 24.2 27.8 5.0 8 8 A E < 0 0 160 -4,-0.7 -1,-0.2 1,-0.2 -2,-0.2 0.557 360.0 360.0 -78.0 -10.9 21.6 30.2 6.4 9 9 A Q 0 0 126 -3,-0.4 -1,-0.2 -4,-0.3 -2,-0.2 0.763 360.0 360.0 -86.4 360.0 20.1 30.8 3.0 10 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 11 23 A K > 0 0 128 0, 0.0 4,-1.0 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -27.6 16.2 16.5 -0.4 12 24 A V H > + 0 0 74 2,-0.2 4,-1.1 1,-0.1 5,-0.1 0.825 360.0 47.4 -81.7 -35.3 18.4 18.9 -2.4 13 25 A L H > S+ 0 0 67 2,-0.2 4,-1.2 1,-0.2 -1,-0.1 0.807 112.7 49.3 -76.1 -30.9 18.6 21.6 0.3 14 26 A V H > S+ 0 0 63 2,-0.2 4,-1.4 1,-0.2 -2,-0.2 0.847 109.0 52.0 -75.5 -36.7 19.4 19.0 3.1 15 27 A R H X S+ 0 0 28 -4,-1.0 4,-1.3 1,-0.2 -2,-0.2 0.830 109.1 51.5 -68.4 -33.9 22.2 17.4 0.9 16 28 A X H X S+ 0 0 58 -4,-1.1 4,-1.2 2,-0.2 -1,-0.2 0.828 108.5 49.7 -72.5 -35.4 23.7 20.9 0.4 17 29 A E H X S+ 0 0 97 -4,-1.2 4,-1.8 1,-0.2 -1,-0.2 0.798 106.7 58.3 -71.4 -32.7 23.7 21.7 4.2 18 30 A A H X S+ 0 0 30 -4,-1.4 4,-0.7 2,-0.2 -2,-0.2 0.885 101.8 52.7 -63.9 -42.7 25.4 18.3 4.7 19 31 A I H >< S+ 0 0 4 -4,-1.3 3,-0.8 1,-0.2 4,-0.2 0.911 111.7 46.1 -61.3 -41.8 28.4 19.2 2.5 20 32 A I H >< S+ 0 0 3 -4,-1.2 3,-1.5 1,-0.2 -1,-0.2 0.858 105.7 61.0 -71.3 -31.3 28.9 22.4 4.5 21 33 A N H 3< S+ 0 0 99 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.672 99.3 57.6 -69.5 -16.0 28.6 20.4 7.7 22 34 A S T << S+ 0 0 31 -3,-0.8 -1,-0.3 -4,-0.7 -2,-0.2 0.491 92.7 92.6 -90.5 -7.8 31.6 18.3 6.7 23 35 A X S < S- 0 0 10 -3,-1.5 2,-0.1 -4,-0.2 -3,-0.0 -0.437 76.0-118.7 -86.9 160.2 33.8 21.4 6.4 24 36 A T > - 0 0 63 -2,-0.1 4,-1.9 1,-0.1 5,-0.2 -0.465 34.1-105.3 -88.3 167.0 36.1 23.0 9.0 25 37 A X H > S+ 0 0 125 1,-0.2 4,-2.1 2,-0.2 5,-0.1 0.870 123.4 54.4 -63.1 -31.4 35.5 26.5 10.3 26 38 A K H > S+ 0 0 165 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.876 107.8 49.2 -68.4 -37.7 38.5 27.7 8.2 27 39 A E H 4 S+ 0 0 0 2,-0.2 -1,-0.2 1,-0.2 -2,-0.2 0.847 112.5 47.7 -69.9 -35.8 37.0 26.1 5.0 28 40 A R H < S+ 0 0 42 -4,-1.9 -25,-2.2 1,-0.2 -24,-0.5 0.861 116.4 44.2 -72.7 -35.6 33.6 27.8 5.7 29 41 A A H < S+ 0 0 59 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.765 128.0 26.7 -79.4 -28.8 35.3 31.2 6.3 30 42 A K >< + 0 0 104 -4,-1.9 3,-1.7 -5,-0.1 -1,-0.2 -0.653 67.0 176.3-138.5 76.8 37.7 31.0 3.3 31 43 A P G > S+ 0 0 17 0, 0.0 3,-1.2 0, 0.0 -1,-0.1 0.647 71.5 75.3 -58.0 -19.3 36.1 28.7 0.6 32 44 A E G 3 S+ 0 0 124 1,-0.2 -5,-0.1 3,-0.0 -2,-0.0 0.786 83.5 65.6 -66.3 -26.3 38.9 29.4 -1.8 33 45 A I G < S+ 0 0 43 -3,-1.7 2,-1.2 -7,-0.2 -1,-0.2 0.646 73.5 105.8 -71.1 -15.5 41.3 27.0 0.1 34 46 A I < + 0 0 10 -3,-1.2 2,-0.1 -4,-0.2 -1,-0.1 -0.539 48.0 154.3 -72.7 92.9 39.0 24.0 -0.8 35 47 A K > - 0 0 147 -2,-1.2 4,-2.5 0, 0.0 5,-0.2 -0.266 59.4 -60.5-102.7-164.6 41.1 22.2 -3.5 36 48 A G H > S+ 0 0 44 1,-0.2 4,-1.6 2,-0.2 5,-0.1 0.840 130.3 45.2 -48.8 -52.8 41.2 18.6 -4.6 37 49 A S H > S+ 0 0 80 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.885 115.4 47.7 -64.6 -39.9 42.2 16.9 -1.3 38 50 A R H > S+ 0 0 95 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.903 108.4 55.4 -70.0 -36.5 39.7 18.9 0.7 39 51 A K H X S+ 0 0 56 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.865 108.4 49.3 -62.3 -38.1 36.9 18.2 -1.8 40 52 A R H X S+ 0 0 155 -4,-1.6 4,-2.0 2,-0.2 5,-0.2 0.865 111.2 48.0 -69.3 -39.1 37.5 14.4 -1.4 41 53 A R H X S+ 0 0 104 -4,-1.6 4,-2.1 2,-0.2 -2,-0.2 0.941 115.5 45.0 -67.4 -45.5 37.4 14.6 2.4 42 54 A I H X S+ 0 0 0 -4,-2.6 4,-1.4 2,-0.2 6,-0.3 0.885 112.3 52.4 -64.1 -42.3 34.2 16.6 2.3 43 55 A A H ><>S+ 0 0 4 -4,-2.4 5,-2.6 -5,-0.2 3,-0.6 0.961 114.6 39.3 -60.1 -54.1 32.6 14.4 -0.3 44 56 A A H ><5S+ 0 0 79 -4,-2.0 3,-0.8 1,-0.2 -1,-0.2 0.866 115.0 55.3 -65.9 -35.2 33.2 11.1 1.5 45 57 A G H 3<5S+ 0 0 56 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.708 112.6 40.4 -70.8 -25.7 32.3 12.8 4.8 46 58 A S T <<5S- 0 0 17 -4,-1.4 -1,-0.3 -3,-0.6 -2,-0.2 0.286 114.7-115.0-102.6 4.1 28.9 14.0 3.6 47 59 A G T < 5S+ 0 0 68 -3,-0.8 -3,-0.2 -4,-0.3 2,-0.1 0.683 80.4 114.7 68.6 20.0 28.3 10.7 1.8 48 60 A X < - 0 0 62 -5,-2.6 2,-0.3 -6,-0.3 -1,-0.2 -0.399 67.4-104.7-107.7-177.7 28.3 12.5 -1.5 49 61 A Q >> - 0 0 113 -2,-0.1 4,-1.2 -3,-0.1 3,-0.8 -0.713 34.1-104.8-107.0 164.3 30.6 12.4 -4.6 50 62 A V H 3> S+ 0 0 57 -2,-0.3 4,-2.2 1,-0.2 3,-0.2 0.844 120.0 60.8 -58.2 -32.1 33.3 15.0 -5.6 51 63 A Q H 3> S+ 0 0 127 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.856 100.8 53.4 -64.8 -33.7 30.9 16.2 -8.4 52 64 A D H <> S+ 0 0 51 -3,-0.8 4,-1.8 2,-0.2 -1,-0.2 0.845 109.6 47.9 -69.6 -34.5 28.3 17.2 -5.7 53 65 A V H X S+ 0 0 0 -4,-1.2 4,-2.5 -3,-0.2 -2,-0.2 0.890 110.0 53.1 -71.4 -41.1 30.9 19.3 -3.8 54 66 A N H X S+ 0 0 64 -4,-2.2 4,-1.8 1,-0.2 -2,-0.2 0.917 110.3 47.9 -59.6 -43.0 31.9 20.9 -7.1 55 67 A R H X S+ 0 0 47 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.896 112.5 47.8 -65.0 -44.3 28.3 21.9 -7.8 56 68 A L H X S+ 0 0 1 -4,-1.8 4,-1.6 2,-0.2 -1,-0.2 0.862 112.8 49.0 -64.5 -42.2 27.7 23.3 -4.3 57 69 A L H X S+ 0 0 26 -4,-2.5 4,-1.7 2,-0.2 -1,-0.2 0.829 112.6 48.2 -67.9 -32.6 31.0 25.3 -4.5 58 70 A K H X S+ 0 0 104 -4,-1.8 4,-2.0 2,-0.2 -2,-0.2 0.885 110.2 51.2 -74.5 -39.4 30.0 26.6 -7.9 59 71 A Q H X S+ 0 0 96 -4,-2.4 4,-1.3 1,-0.2 -2,-0.2 0.819 111.6 48.5 -66.6 -30.2 26.5 27.5 -6.6 60 72 A F H X S+ 0 0 16 -4,-1.6 4,-3.1 2,-0.2 -1,-0.2 0.874 110.0 51.4 -73.4 -43.1 28.1 29.4 -3.7 61 73 A D H X S+ 0 0 57 -4,-1.7 4,-1.7 2,-0.2 -2,-0.2 0.819 108.6 51.5 -64.2 -31.0 30.5 31.2 -6.2 62 74 A D H X S+ 0 0 82 -4,-2.0 4,-0.8 2,-0.2 -1,-0.2 0.856 114.2 44.0 -72.3 -36.6 27.4 32.2 -8.3 63 75 A X H X S+ 0 0 55 -4,-1.3 4,-1.9 2,-0.2 3,-0.4 0.904 112.1 51.9 -74.3 -41.9 25.8 33.6 -5.1 64 76 A Q H X S+ 0 0 21 -4,-3.1 4,-1.1 1,-0.2 -2,-0.2 0.845 110.1 49.6 -63.9 -35.4 29.1 35.3 -3.9 65 77 A R H < S+ 0 0 161 -4,-1.7 -1,-0.2 2,-0.2 -2,-0.2 0.721 110.5 50.1 -75.7 -23.6 29.5 37.0 -7.3 66 78 A X H X S+ 0 0 112 -4,-0.8 4,-0.6 -3,-0.4 3,-0.5 0.793 109.9 50.2 -82.8 -31.9 25.9 38.3 -7.2 67 79 A X H < S+ 0 0 84 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.752 107.8 54.6 -75.4 -26.1 26.4 39.6 -3.6 68 80 A K T < S+ 0 0 88 -4,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.508 106.2 53.3 -83.5 -8.9 29.6 41.4 -4.9 69 81 A K T 4 0 0 188 -3,-0.5 -2,-0.2 -5,-0.1 -1,-0.2 0.600 360.0 360.0 -99.1 -17.6 27.5 43.1 -7.6 70 82 A X < 0 0 189 -4,-0.6 -2,-0.2 -3,-0.1 -3,-0.2 0.676 360.0 360.0-125.7 360.0 24.9 44.5 -5.2