==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-JAN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 12-APR-12 2LRS . COMPND 2 MOLECULE: ENDORIBONUCLEASE DICER HOMOLOG 1; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR P.BURDISSO,I.SUAREZ,B.BERSCH,N.BOLOGNA,J.PALATNIK,J.BOISBOUV . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5228.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 63.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 23.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 15 A N > 0 0 99 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -19.6 -6.4 5.1 5.9 2 16 A D H > + 0 0 126 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.906 360.0 49.7 -61.4 -44.4 -9.4 7.5 5.7 3 17 A I H > S+ 0 0 69 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.902 113.2 45.8 -64.2 -41.3 -10.7 6.1 2.5 4 18 A C H 4>S+ 0 0 2 2,-0.2 5,-2.5 1,-0.2 -1,-0.2 0.904 115.3 47.8 -68.3 -40.9 -10.6 2.5 3.8 5 19 A L H ><5S+ 0 0 103 -4,-2.5 3,-1.5 1,-0.2 -2,-0.2 0.937 112.4 48.4 -62.2 -50.0 -12.2 3.6 7.1 6 20 A R H 3<5S+ 0 0 233 -4,-3.2 -2,-0.2 1,-0.3 -1,-0.2 0.845 105.8 57.7 -60.2 -36.8 -14.9 5.5 5.3 7 21 A K T 3<5S- 0 0 87 -4,-2.1 -1,-0.3 -5,-0.2 -2,-0.2 0.494 117.3-117.6 -73.3 -3.3 -15.6 2.5 3.0 8 22 A N T < 5 + 0 0 144 -3,-1.5 -3,-0.2 1,-0.2 -2,-0.1 0.889 67.3 140.2 65.0 43.6 -16.2 0.6 6.3 9 23 A W < - 0 0 20 -5,-2.5 -1,-0.2 1,-0.2 27,-0.1 -0.714 55.5-103.0-105.1 162.8 -13.4 -1.8 5.7 10 24 A P - 0 0 73 0, 0.0 25,-0.3 0, 0.0 -1,-0.2 -0.093 60.0 -67.0 -67.9-178.8 -10.9 -3.2 8.3 11 25 A M - 0 0 106 1,-0.1 23,-0.0 23,-0.1 0, 0.0 -0.626 60.4-119.0 -80.7 127.9 -7.4 -1.8 8.5 12 26 A P - 0 0 16 0, 0.0 2,-0.3 0, 0.0 22,-0.2 -0.005 27.9 -95.0 -63.4 168.0 -5.3 -2.7 5.3 13 27 A S E -A 33 0A 31 20,-2.2 20,-1.1 2,-0.0 2,-0.3 -0.644 39.5-179.5 -86.6 140.4 -2.2 -4.8 5.2 14 28 A Y E +A 32 0A 77 -2,-0.3 2,-0.3 18,-0.2 18,-0.1 -0.911 17.6 137.8-145.6 111.0 1.2 -3.0 5.2 15 29 A R E -A 31 0A 209 16,-0.7 16,-1.1 -2,-0.3 2,-0.2 -0.933 52.1-110.5-158.7 130.4 4.5 -4.8 5.0 16 30 A C E -A 30 0A 41 -2,-0.3 14,-0.3 14,-0.2 3,-0.2 -0.437 21.8-166.2 -64.2 124.5 7.8 -4.1 3.2 17 31 A V E S+ 0 0 81 12,-1.1 2,-0.4 1,-0.3 13,-0.2 0.809 81.2 22.6 -82.5 -32.6 8.3 -6.8 0.5 18 32 A K E S+A 29 0A 114 11,-2.7 11,-2.7 -3,-0.0 2,-0.3 -0.979 72.2 158.0-136.4 124.2 11.9 -5.8 -0.0 19 33 A E - 0 0 96 -2,-0.4 9,-0.1 9,-0.2 7,-0.1 -0.967 53.0 -11.5-148.0 127.3 14.0 -4.0 2.6 20 34 A G + 0 0 12 5,-0.4 7,-0.1 -2,-0.3 -1,-0.1 -0.141 61.6 154.8 77.2-177.8 17.8 -3.9 2.9 21 35 A G - 0 0 58 5,-0.1 2,-2.5 -3,-0.1 5,-0.1 -0.992 59.8 -2.1 157.1-149.0 20.3 -6.0 1.1 22 36 A P S S- 0 0 89 0, 0.0 2,-3.1 0, 0.0 4,-0.1 -0.328 100.9 -91.9 -74.0 57.8 23.9 -6.0 -0.1 23 37 A A S > S+ 0 0 92 -2,-2.5 3,-0.6 1,-0.2 -3,-0.1 -0.293 127.2 65.4 70.0 -59.6 24.5 -2.5 1.3 24 38 A H T 3 S+ 0 0 160 -2,-3.1 -1,-0.2 1,-0.3 3,-0.1 0.212 89.7 72.6 -79.0 18.1 23.6 -0.7 -2.0 25 39 A A T 3 + 0 0 14 1,-0.1 -5,-0.4 -6,-0.0 -1,-0.3 -0.168 49.9 124.0-126.3 39.3 20.0 -2.0 -1.6 26 40 A K < + 0 0 120 -3,-0.6 2,-0.4 -7,-0.1 -1,-0.1 0.123 43.4 112.9 -88.3 18.2 18.7 0.1 1.2 27 41 A R - 0 0 156 -7,-0.1 2,-0.5 -3,-0.1 -7,-0.3 -0.799 64.2-138.3 -85.6 138.7 15.9 1.2 -1.0 28 42 A F B -C 50 0B 12 22,-3.3 22,-3.0 -2,-0.4 2,-0.4 -0.851 18.1-170.8-110.6 131.6 12.6 -0.1 0.3 29 43 A T E +A 18 0A 23 -11,-2.7 -11,-2.7 -2,-0.5 -12,-1.1 -0.972 12.8 176.2-120.0 131.0 9.9 -1.6 -1.8 30 44 A F E -A 16 0A 1 -2,-0.4 17,-3.2 -14,-0.3 2,-0.4 -0.957 18.4-147.5-137.9 151.8 6.5 -2.4 -0.3 31 45 A G E -AB 15 46A 4 -16,-1.1 -16,-0.7 -2,-0.3 15,-0.3 -0.982 12.1-155.3-125.5 136.5 3.1 -3.6 -1.5 32 46 A V E -AB 14 45A 0 13,-2.1 13,-3.0 -2,-0.4 2,-0.3 -0.715 10.1-178.6-107.7 154.4 -0.3 -2.7 -0.1 33 47 A R E -A 13 0A 93 -20,-1.1 -20,-2.2 -2,-0.3 2,-0.3 -0.984 6.5-162.0-149.5 145.2 -3.6 -4.6 -0.1 34 48 A V - 0 0 0 -2,-0.3 8,-2.4 -22,-0.2 2,-1.3 -0.902 27.2-116.3-125.5 155.9 -7.1 -3.7 1.2 35 49 A N E -D 41 0C 60 -2,-0.3 2,-1.0 -25,-0.3 6,-0.3 -0.678 28.8-167.3 -95.1 83.9 -10.2 -5.8 2.0 36 50 A T E >> -D 40 0C 9 4,-2.4 3,-3.2 -2,-1.3 4,-2.8 -0.620 15.4-146.1 -72.9 103.1 -12.7 -4.4 -0.4 37 51 A S T 34 S+ 0 0 101 -2,-1.0 -1,-0.2 1,-0.3 4,-0.1 0.735 95.2 57.2 -46.1 -33.0 -15.8 -6.0 1.0 38 52 A D T 34 S- 0 0 111 2,-0.1 -1,-0.3 1,-0.1 -2,-0.1 0.725 134.1 -0.3 -72.3 -22.6 -17.3 -6.4 -2.5 39 53 A R T <4 S- 0 0 215 -3,-3.2 2,-0.3 1,-0.2 -2,-0.2 0.603 97.0-128.2-134.6 -45.7 -14.4 -8.5 -3.7 40 54 A G E < +D 36 0C 15 -4,-2.8 -4,-2.4 -6,-0.0 -1,-0.2 -0.933 69.1 22.7 126.6-154.3 -11.8 -8.9 -1.0 41 55 A W E S-D 35 0C 141 -2,-0.3 -6,-0.2 -6,-0.3 3,-0.1 -0.317 79.9-133.9 -49.2 120.3 -8.1 -8.4 -0.9 42 56 A T - 0 0 18 -8,-2.4 2,-0.2 1,-0.2 -1,-0.1 -0.124 37.3 -67.6 -70.3 173.0 -7.2 -5.9 -3.6 43 57 A D - 0 0 128 1,-0.1 2,-0.4 -10,-0.1 -1,-0.2 -0.457 63.2-102.1 -61.0 131.8 -4.4 -6.1 -6.1 44 58 A E - 0 0 92 -2,-0.2 2,-1.1 -3,-0.1 -11,-0.2 -0.453 35.3-146.4 -64.6 115.0 -1.2 -5.8 -4.2 45 59 A C E -B 32 0A 18 -13,-3.0 -13,-2.1 -2,-0.4 2,-0.4 -0.737 11.6-160.7 -92.2 97.4 -0.1 -2.3 -4.8 46 60 A I E -B 31 0A 78 -2,-1.1 -15,-0.3 -15,-0.3 2,-0.0 -0.655 8.8-154.1 -78.7 126.2 3.7 -2.2 -4.9 47 61 A G - 0 0 6 -17,-3.2 13,-0.1 -2,-0.4 9,-0.1 -0.129 29.1 -76.5 -85.2-171.0 5.2 1.2 -4.4 48 62 A E - 0 0 140 8,-0.1 2,-0.6 -19,-0.1 -18,-0.2 -0.557 54.0 -88.8 -88.4 152.1 8.5 2.6 -5.6 49 63 A P - 0 0 53 0, 0.0 -20,-0.2 0, 0.0 -1,-0.1 -0.501 57.3-167.6 -57.1 107.9 11.9 1.8 -4.0 50 64 A M B -C 28 0B 26 -22,-3.0 -22,-3.3 -2,-0.6 6,-0.1 -0.773 30.3-134.9-110.4 147.2 12.1 4.5 -1.4 51 65 A P S S+ 0 0 90 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.373 92.6 48.5 -81.2 4.4 15.0 5.6 0.7 52 66 A S S > S- 0 0 55 -24,-0.2 4,-1.7 1,-0.1 3,-0.4 -0.985 75.6-136.2-147.5 137.1 12.9 5.8 3.9 53 67 A V H > S+ 0 0 61 -2,-0.3 4,-1.6 1,-0.3 5,-0.1 0.770 106.7 54.6 -65.3 -28.8 10.5 3.2 5.3 54 68 A K H > S+ 0 0 160 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.869 109.4 47.1 -71.2 -36.2 7.9 5.8 6.1 55 69 A K H > S+ 0 0 107 -3,-0.4 4,-2.3 2,-0.2 5,-0.3 0.790 105.4 62.7 -74.5 -28.3 7.9 7.0 2.5 56 70 A A H X S+ 0 0 2 -4,-1.7 4,-1.8 2,-0.2 5,-0.2 0.975 107.9 39.5 -58.5 -59.0 7.7 3.4 1.4 57 71 A K H X S+ 0 0 77 -4,-1.6 4,-2.8 1,-0.2 3,-0.2 0.959 117.9 47.6 -53.6 -58.6 4.3 2.8 2.9 58 72 A D H X S+ 0 0 104 -4,-1.7 4,-1.6 1,-0.2 -1,-0.2 0.863 110.8 50.0 -57.7 -42.4 2.8 6.2 2.1 59 73 A S H X S+ 0 0 32 -4,-2.3 4,-0.9 2,-0.2 -1,-0.2 0.871 113.4 45.2 -70.3 -36.6 3.9 6.3 -1.6 60 74 A A H >X S+ 0 0 0 -4,-1.8 4,-1.8 -5,-0.3 3,-0.8 0.913 109.6 57.0 -67.4 -42.9 2.5 2.8 -2.2 61 75 A A H 3X S+ 0 0 13 -4,-2.8 4,-2.0 1,-0.2 -2,-0.2 0.828 99.0 60.7 -54.2 -34.7 -0.7 3.9 -0.3 62 76 A V H 3X S+ 0 0 68 -4,-1.6 4,-0.6 1,-0.2 -1,-0.2 0.866 106.2 45.6 -64.6 -34.8 -1.0 6.8 -2.8 63 77 A L H XX S+ 0 0 71 -4,-0.9 4,-1.1 -3,-0.8 3,-0.5 0.833 109.3 56.4 -74.6 -33.1 -1.3 4.2 -5.6 64 78 A L H 3X S+ 0 0 3 -4,-1.8 4,-2.9 1,-0.2 5,-0.2 0.851 97.9 61.6 -64.1 -37.3 -3.7 2.3 -3.5 65 79 A L H 3< S+ 0 0 72 -4,-2.0 4,-0.4 1,-0.2 -1,-0.2 0.793 100.5 54.7 -60.7 -28.3 -5.9 5.4 -3.3 66 80 A E H << S+ 0 0 109 -4,-0.6 -1,-0.2 -3,-0.5 -2,-0.2 0.863 108.6 47.2 -73.0 -36.7 -6.2 5.2 -7.0 67 81 A L H >< S+ 0 0 44 -4,-1.1 3,-1.7 1,-0.2 -2,-0.2 0.930 113.0 48.4 -66.9 -46.2 -7.5 1.7 -6.7 68 82 A L G >< S+ 0 0 6 -4,-2.9 3,-0.5 1,-0.3 -1,-0.2 0.578 100.7 66.7 -70.6 -11.3 -9.9 2.8 -3.9 69 83 A N G 3 S+ 0 0 136 -4,-0.4 -1,-0.3 1,-0.2 -2,-0.2 0.503 94.5 60.8 -85.2 -4.5 -10.9 5.7 -6.2 70 84 A K G < 0 0 149 -3,-1.7 -1,-0.2 -4,-0.1 -2,-0.1 -0.320 360.0 360.0-114.4 45.8 -12.4 3.0 -8.4 71 85 A T < 0 0 97 -3,-0.5 -3,-0.0 0, 0.0 -1,-0.0 -0.808 360.0 360.0-122.0 360.0 -14.9 1.7 -5.9