==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=12-APR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 13-APR-12 2LRV . COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YMGD; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR K.WU,M.INOUYE,J.BAUM,S.HSU,H.MASUDA . 84 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5924.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 79.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 13.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 57.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 7 A N 0 0 207 0, 0.0 2,-0.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -36.7 11.8 -20.2 0.0 2 8 A G - 0 0 60 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.746 360.0-169.5-105.0 83.9 10.0 -18.3 -2.8 3 9 A L - 0 0 105 -2,-0.9 5,-0.1 1,-0.1 0, 0.0 -0.628 22.7-121.7 -78.3 120.8 9.2 -15.0 -1.2 4 10 A P >> - 0 0 65 0, 0.0 4,-1.6 0, 0.0 3,-1.2 -0.219 20.8-115.5 -58.2 151.1 6.9 -12.9 -3.4 5 11 A S H >> S+ 0 0 89 1,-0.3 4,-1.4 2,-0.2 3,-0.7 0.933 116.7 49.0 -55.0 -50.7 8.1 -9.4 -4.5 6 12 A E H 34 S+ 0 0 76 1,-0.2 65,-2.5 2,-0.2 -1,-0.3 0.611 112.8 50.8 -68.3 -9.6 5.4 -7.6 -2.6 7 13 A T H <4 S+ 0 0 42 -3,-1.2 -1,-0.2 63,-0.2 -2,-0.2 0.710 113.9 41.5 -97.5 -25.2 6.3 -9.7 0.5 8 14 A Y H << S+ 0 0 168 -4,-1.6 2,-0.3 -3,-0.7 -2,-0.2 0.525 105.4 78.8 -99.9 -8.2 10.0 -9.0 0.3 9 15 A I S < S- 0 0 32 -4,-1.4 61,-3.5 -5,-0.2 62,-0.4 -0.758 72.8-132.6-108.1 148.4 9.7 -5.4 -0.5 10 16 A T B > -A 69 0A 29 -2,-0.3 4,-1.7 59,-0.3 3,-0.4 -0.699 19.7-123.1 -98.5 150.8 9.0 -2.5 1.8 11 17 A a H > S+ 0 0 2 57,-1.5 4,-1.4 -2,-0.3 48,-0.2 0.794 112.8 59.9 -64.4 -26.1 6.4 0.2 1.1 12 18 A A H > S+ 0 0 37 56,-0.3 4,-1.4 1,-0.2 -1,-0.2 0.909 107.4 44.5 -65.9 -41.2 9.1 2.8 1.5 13 19 A E H > S+ 0 0 95 -3,-0.4 4,-2.2 1,-0.2 -2,-0.2 0.791 106.9 60.7 -72.3 -28.3 11.0 1.2 -1.3 14 20 A A H X S+ 0 0 2 -4,-1.7 4,-1.7 2,-0.2 -1,-0.2 0.852 103.2 51.2 -66.3 -31.6 7.8 1.0 -3.3 15 21 A N H X S+ 0 0 47 -4,-1.4 4,-0.5 2,-0.2 -1,-0.2 0.883 106.5 54.1 -70.5 -41.2 7.7 4.8 -3.0 16 22 A E H >< S+ 0 0 122 -4,-1.4 3,-1.2 1,-0.2 4,-0.4 0.904 106.8 51.1 -56.7 -44.3 11.2 4.9 -4.4 17 23 A M H >X S+ 0 0 81 -4,-2.2 4,-3.5 1,-0.2 3,-2.4 0.890 96.0 70.7 -61.2 -41.3 10.1 2.8 -7.4 18 24 A A H 3< S+ 0 0 20 -4,-1.7 4,-0.5 1,-0.3 -1,-0.2 0.713 87.6 65.5 -47.5 -26.1 7.2 5.2 -8.0 19 25 A K T << S+ 0 0 128 -3,-1.2 -1,-0.3 -4,-0.5 -2,-0.2 0.837 117.5 25.4 -67.5 -31.6 9.9 7.8 -9.1 20 26 A T T <4 S+ 0 0 121 -3,-2.4 2,-0.3 -4,-0.4 -2,-0.2 0.815 144.7 17.3 -96.2 -42.3 10.6 5.5 -12.0 21 27 A D X + 0 0 88 -4,-3.5 4,-1.5 1,-0.1 -2,-0.2 -0.698 62.9 161.8-136.6 80.2 7.2 3.8 -12.2 22 28 A S H > S+ 0 0 80 -4,-0.5 4,-2.6 -2,-0.3 5,-0.2 0.926 81.4 51.5 -63.4 -45.3 4.5 5.7 -10.3 23 29 A A H > S+ 0 0 75 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.818 106.4 55.8 -64.1 -31.0 1.7 3.8 -12.2 24 30 A Q H > S+ 0 0 104 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.909 113.2 39.6 -68.3 -41.1 3.2 0.5 -11.3 25 31 A V H X S+ 0 0 6 -4,-1.5 4,-2.3 2,-0.2 5,-0.2 0.865 114.6 53.1 -77.0 -35.0 3.2 1.2 -7.6 26 32 A A H X S+ 0 0 49 -4,-2.6 4,-0.9 1,-0.2 -2,-0.2 0.829 108.8 51.1 -70.0 -31.6 -0.2 2.9 -7.7 27 33 A E H X S+ 0 0 114 -4,-1.7 4,-3.2 -5,-0.2 -1,-0.2 0.918 110.0 48.2 -70.9 -43.0 -1.6 -0.1 -9.4 28 34 A I H X>S+ 0 0 58 -4,-1.6 4,-1.6 1,-0.2 5,-0.6 0.939 112.0 47.6 -65.5 -48.6 -0.3 -2.6 -6.8 29 35 A V H <5S+ 0 0 2 -4,-2.3 4,-0.4 1,-0.2 -1,-0.2 0.770 116.5 47.0 -64.0 -24.8 -1.5 -0.6 -3.8 30 36 A A H X5S+ 0 0 24 -4,-0.9 4,-2.8 -5,-0.2 5,-0.4 0.917 108.1 53.9 -81.4 -47.6 -4.8 -0.3 -5.6 31 37 A V H X5S+ 0 0 87 -4,-3.2 4,-1.3 1,-0.2 -2,-0.2 0.968 125.4 20.9 -52.5 -66.9 -5.2 -4.0 -6.6 32 38 A M H X5S+ 0 0 59 -4,-1.6 4,-3.6 2,-0.2 5,-0.2 0.860 123.2 60.4 -73.6 -33.3 -4.7 -5.6 -3.2 33 39 A G H >X S+ 0 0 15 -4,-3.6 3,-1.1 2,-0.2 4,-0.7 0.947 113.5 44.5 -57.1 -54.7 -8.2 -5.8 1.3 37 43 A V H >X>S+ 0 0 16 -4,-3.1 4,-1.7 1,-0.3 3,-1.0 0.903 114.1 50.2 -60.0 -41.0 -10.3 -2.8 2.5 38 44 A A H 3<5S+ 0 0 23 -4,-1.9 -1,-0.3 -5,-0.3 -2,-0.2 0.629 101.1 66.1 -73.1 -11.9 -13.4 -4.3 0.8 39 45 A S H <<5S+ 0 0 88 -3,-1.1 -1,-0.2 -4,-0.9 -2,-0.2 0.690 112.2 30.3 -82.9 -18.6 -12.7 -7.6 2.6 40 46 A R H <<5S+ 0 0 172 -3,-1.0 -2,-0.2 -4,-0.7 -1,-0.1 0.657 139.7 19.3-110.5 -23.1 -13.3 -6.2 6.0 41 47 A D T <5S- 0 0 25 -4,-1.7 -3,-0.2 -5,-0.2 -2,-0.1 0.769 70.8-166.8-113.3 -48.5 -15.8 -3.5 5.3 42 48 A L S > - 0 0 50 -2,-2.5 3,-1.7 1,-0.1 4,-1.2 -0.792 29.5-157.2 -89.5 113.8 -12.3 5.7 -4.6 48 54 A P H 3> S+ 0 0 97 0, 0.0 4,-2.2 0, 0.0 -1,-0.1 0.748 93.4 64.2 -59.9 -23.7 -9.1 7.1 -6.2 49 55 A E H 3> S+ 0 0 153 1,-0.2 4,-0.7 2,-0.2 5,-0.1 0.728 100.3 52.1 -73.1 -21.4 -8.8 9.5 -3.3 50 56 A L H <> S+ 0 0 69 -3,-1.7 4,-2.7 2,-0.2 -1,-0.2 0.896 111.2 43.9 -81.4 -42.4 -8.3 6.5 -1.0 51 57 A S H X S+ 0 0 38 -4,-1.2 4,-1.4 2,-0.2 5,-0.4 0.950 108.7 57.8 -66.4 -51.1 -5.5 4.9 -3.0 52 58 A A H X S+ 0 0 62 -4,-2.2 4,-0.7 1,-0.2 -1,-0.2 0.822 118.2 34.1 -45.0 -36.7 -3.8 8.3 -3.5 53 59 A K H X>S+ 0 0 124 -4,-0.7 4,-2.8 2,-0.2 5,-0.5 0.796 106.0 67.9 -92.9 -31.7 -3.7 8.6 0.3 54 60 A V H <5S+ 0 0 18 -4,-2.7 4,-0.3 1,-0.2 -2,-0.2 0.716 112.8 35.0 -61.9 -20.4 -3.2 4.8 1.2 55 61 A V H X5S+ 0 0 33 -4,-1.4 4,-2.3 3,-0.1 -1,-0.2 0.745 113.0 59.1-101.0 -32.3 0.2 5.0 -0.3 56 62 A E H X5S+ 0 0 85 -4,-0.7 4,-0.6 -5,-0.4 -2,-0.2 0.932 117.4 31.8 -61.8 -48.4 1.0 8.6 0.8 57 63 A K H >X5S+ 0 0 111 -4,-2.8 4,-1.9 2,-0.2 3,-0.5 0.877 114.1 63.9 -77.2 -36.9 0.6 7.8 4.4 58 64 A L H 3>X S+ 0 0 39 -4,-1.9 4,-1.6 -3,-0.4 3,-0.6 0.915 112.5 46.5 -58.9 -44.2 4.8 4.6 8.2 62 68 A a H 3< S+ 0 0 3 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.817 102.7 63.8 -69.6 -32.1 7.6 2.6 6.5 63 69 A A H 3< S+ 0 0 77 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.785 113.1 35.8 -60.4 -26.8 9.9 5.7 6.8 64 70 A K H << S+ 0 0 144 -4,-0.9 -2,-0.2 -3,-0.6 -1,-0.2 0.678 130.5 33.2 -97.4 -23.7 9.6 5.3 10.5 65 71 A D >< - 0 0 88 -4,-1.6 3,-1.7 -5,-0.1 -1,-0.3 -0.829 59.8-175.5-138.3 95.4 9.5 1.5 10.5 66 72 A P T 3 S+ 0 0 85 0, 0.0 -4,-0.1 0, 0.0 -1,-0.1 0.652 81.6 72.7 -64.0 -17.0 11.6 -0.3 7.7 67 73 A Q T 3 + 0 0 161 1,-0.1 2,-1.8 2,-0.1 -5,-0.1 0.457 66.9 109.1 -77.5 -0.8 10.1 -3.6 8.9 68 74 A M < - 0 0 37 -3,-1.7 -57,-1.5 -6,-0.2 -56,-0.3 -0.570 61.7-156.6 -81.0 81.9 6.8 -2.7 7.3 69 75 A L B > -A 10 0A 62 -2,-1.8 4,-3.9 -59,-0.2 3,-0.5 -0.313 22.4-119.3 -56.9 141.4 6.8 -5.1 4.3 70 76 A L H > S+ 0 0 9 -61,-3.5 4,-2.2 1,-0.2 5,-0.3 0.892 112.1 53.6 -51.4 -49.2 4.5 -3.8 1.5 71 77 A I H > S+ 0 0 49 -65,-2.5 4,-0.8 -62,-0.4 -1,-0.2 0.877 120.3 32.6 -55.9 -42.1 2.2 -6.9 1.6 72 78 A T H > S+ 0 0 77 -3,-0.5 4,-3.0 -66,-0.2 -2,-0.2 0.879 112.5 61.5 -82.5 -41.8 1.6 -6.4 5.4 73 79 A A H X S+ 0 0 0 -4,-3.9 4,-2.2 1,-0.2 -2,-0.2 0.861 104.2 49.4 -55.1 -41.2 1.8 -2.6 5.4 74 80 A I H X S+ 0 0 2 -4,-2.2 4,-2.3 -5,-0.2 -1,-0.2 0.928 112.6 47.1 -65.4 -43.7 -1.1 -2.3 3.1 75 81 A D H X S+ 0 0 52 -4,-0.8 4,-1.2 -5,-0.3 -2,-0.2 0.896 111.9 52.2 -63.1 -39.5 -3.2 -4.7 5.2 76 82 A D H X S+ 0 0 61 -4,-3.0 4,-1.5 2,-0.2 -1,-0.2 0.885 109.9 47.3 -64.1 -40.5 -2.1 -2.7 8.3 77 83 A T H X S+ 0 0 15 -4,-2.2 4,-2.7 1,-0.2 5,-0.3 0.868 107.0 57.7 -70.0 -34.6 -3.2 0.6 6.8 78 84 A M H < S+ 0 0 6 -4,-2.3 4,-0.5 1,-0.2 -1,-0.2 0.809 104.7 53.2 -63.2 -28.3 -6.5 -1.1 5.8 79 85 A R H < S+ 0 0 177 -4,-1.2 -1,-0.2 2,-0.2 -2,-0.2 0.903 110.0 46.8 -72.2 -41.5 -6.9 -1.8 9.5 80 86 A A H >< S+ 0 0 73 -4,-1.5 3,-0.6 1,-0.2 -2,-0.2 0.962 125.2 28.5 -65.1 -54.1 -6.4 1.8 10.4 81 87 A I T 3< S+ 0 0 70 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.388 97.8 92.6 -91.3 5.5 -8.7 3.3 7.8 82 88 A G T 3 S+ 0 0 20 -4,-0.5 2,-0.4 -5,-0.3 -1,-0.2 0.452 81.9 59.0 -77.2 -0.4 -10.9 0.2 7.8 83 89 A K < 0 0 186 -3,-0.6 -1,-0.2 -4,-0.1 -4,-0.0 -0.818 360.0 360.0-131.9 90.6 -13.1 1.8 10.4 84 90 A K 0 0 206 -2,-0.4 -1,-0.1 -3,-0.1 -2,-0.1 0.761 360.0 360.0-107.2 360.0 -14.6 5.1 9.3