==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-APR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL CYCLE 13-APR-12 2LRW . COMPND 2 MOLECULE: UBIQUITIN, PUTATIVE; . SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; . AUTHOR R.WANG,T.WANG,S.LIAO,J.ZHANG,X.TU . 78 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6008.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 16.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 88 0, 0.0 16,-0.8 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 -66.2 2.1 -0.0 -1.2 2 2 A L E +A 16 0A 76 14,-0.3 63,-0.6 15,-0.1 2,-0.3 -0.902 360.0 163.1-107.1 123.5 0.9 -3.2 -2.9 3 3 A L E -Ab 15 65A 6 12,-0.8 12,-1.7 -2,-0.5 2,-0.6 -0.985 31.3-136.8-139.1 148.7 -2.7 -4.2 -2.7 4 4 A K E -Ab 14 66A 90 61,-0.5 63,-3.2 -2,-0.3 2,-0.5 -0.907 19.8-168.0-110.2 110.7 -5.0 -6.6 -4.5 5 5 A V E -Ab 13 67A 15 8,-2.0 8,-2.2 -2,-0.6 2,-0.5 -0.854 5.1-176.9-101.3 126.4 -8.4 -5.3 -5.4 6 6 A K E -Ab 12 68A 67 61,-1.7 63,-1.7 -2,-0.5 6,-0.2 -0.977 9.9-153.9-126.8 122.0 -11.1 -7.7 -6.7 7 7 A T > - 0 0 30 4,-1.4 3,-1.6 -2,-0.5 4,-0.4 -0.346 35.7-102.1 -86.3 170.0 -14.6 -6.6 -7.8 8 8 A V T 3 S+ 0 0 76 61,-0.3 62,-0.1 1,-0.3 -1,-0.1 0.631 119.0 70.2 -66.1 -12.4 -17.8 -8.7 -7.8 9 9 A S T 3 S- 0 0 83 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.249 121.8-104.9 -88.5 12.6 -17.2 -9.2 -11.5 10 10 A N S < S+ 0 0 147 -3,-1.6 2,-0.8 1,-0.2 -2,-0.2 0.850 73.3 147.7 67.2 35.0 -14.2 -11.4 -10.7 11 11 A K - 0 0 129 -4,-0.4 -4,-1.4 2,-0.0 2,-0.4 -0.788 22.2-180.0-106.3 90.1 -11.8 -8.7 -11.7 12 12 A V E -A 6 0A 54 -2,-0.8 2,-0.4 -6,-0.2 -6,-0.3 -0.752 4.0-175.0 -93.3 134.2 -8.7 -9.0 -9.5 13 13 A I E -A 5 0A 94 -8,-2.2 -8,-2.0 -2,-0.4 2,-0.7 -0.973 9.4-161.8-133.7 119.8 -5.8 -6.6 -9.9 14 14 A Q E +A 4 0A 145 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.884 17.4 176.0-104.4 114.1 -2.5 -6.8 -8.1 15 15 A I E -A 3 0A 50 -12,-1.7 -12,-0.8 -2,-0.7 3,-0.1 -0.843 26.3-156.0-116.9 154.0 -0.4 -3.6 -8.1 16 16 A T E S+A 2 0A 104 -2,-0.3 -14,-0.3 -14,-0.2 2,-0.1 -0.371 75.0 66.4-123.4 52.8 2.9 -2.7 -6.4 17 17 A S + 0 0 93 -16,-0.8 2,-0.3 -14,-0.1 -1,-0.2 -0.445 55.8 172.2-173.0 89.7 2.6 1.1 -6.1 18 18 A L - 0 0 13 42,-0.1 -16,-0.1 -3,-0.1 6,-0.1 -0.749 27.3-121.5-105.2 152.8 0.1 2.8 -3.9 19 19 A T - 0 0 49 -2,-0.3 -1,-0.1 4,-0.2 5,-0.0 -0.202 2.7-145.1 -82.3 177.7 -0.1 6.5 -3.1 20 20 A D S S+ 0 0 71 3,-0.1 37,-0.2 39,-0.1 40,-0.1 0.323 91.2 58.4-124.6 0.9 -0.0 8.1 0.4 21 21 A D S S- 0 0 115 35,-0.2 36,-0.4 36,-0.1 35,-0.2 0.861 132.5 -9.3 -96.6 -50.3 -2.5 11.0 -0.3 22 22 A N S > S+ 0 0 64 34,-0.2 2,-2.1 1,-0.1 3,-1.5 0.699 72.9 165.5-116.8 -43.7 -5.6 9.2 -1.3 23 23 A T T 3> S+ 0 0 0 1,-0.3 4,-1.4 2,-0.1 -4,-0.2 -0.352 84.8 26.3 60.7 -81.9 -4.6 5.5 -1.7 24 24 A I H 3> S+ 0 0 6 -2,-2.1 4,-3.0 28,-0.3 5,-0.3 0.919 123.7 51.6 -75.2 -46.2 -8.2 4.2 -1.7 25 25 A A H <> S+ 0 0 17 -3,-1.5 4,-2.3 28,-0.3 -1,-0.2 0.873 111.4 49.1 -58.3 -38.7 -9.8 7.3 -3.0 26 26 A E H > S+ 0 0 71 2,-0.2 4,-1.9 3,-0.2 -1,-0.2 0.886 112.5 47.5 -68.8 -39.9 -7.3 7.5 -5.9 27 27 A L H X S+ 0 0 41 -4,-1.4 4,-1.7 2,-0.2 -2,-0.2 0.943 116.3 42.4 -66.6 -49.3 -7.9 3.8 -6.8 28 28 A K H X S+ 0 0 46 -4,-3.0 4,-2.0 1,-0.2 -2,-0.2 0.886 115.4 50.6 -65.2 -39.7 -11.7 4.1 -6.7 29 29 A G H X S+ 0 0 15 -4,-2.3 4,-2.0 -5,-0.3 -1,-0.2 0.842 109.0 51.2 -67.6 -33.7 -11.6 7.4 -8.5 30 30 A K H X S+ 0 0 133 -4,-1.9 4,-1.8 2,-0.2 -1,-0.2 0.847 109.6 50.3 -71.7 -35.0 -9.4 6.0 -11.2 31 31 A L H X S+ 0 0 92 -4,-1.7 4,-1.7 2,-0.2 -2,-0.2 0.910 113.5 44.2 -69.4 -43.6 -11.7 3.1 -11.8 32 32 A E H X S+ 0 0 61 -4,-2.0 4,-0.5 1,-0.2 -2,-0.2 0.893 115.4 48.1 -68.1 -40.9 -14.8 5.3 -12.1 33 33 A E H < S+ 0 0 150 -4,-2.0 3,-0.2 1,-0.2 -1,-0.2 0.848 108.2 56.0 -68.2 -34.6 -13.0 7.8 -14.3 34 34 A S H < S+ 0 0 86 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.917 111.4 41.7 -63.9 -44.7 -11.7 5.0 -16.5 35 35 A E H < S- 0 0 136 -4,-1.7 2,-0.4 -5,-0.1 -1,-0.2 0.549 110.6-126.2 -79.6 -7.7 -15.2 3.6 -17.2 36 36 A G S < S+ 0 0 55 -4,-0.5 -1,-0.1 -3,-0.2 -4,-0.1 -0.178 83.7 41.3 91.0 -42.6 -16.4 7.2 -17.6 37 37 A I S S- 0 0 127 -2,-0.4 2,-0.1 -6,-0.1 -2,-0.1 -0.963 91.6 -95.2-138.7 155.2 -19.2 6.7 -15.1 38 38 A P - 0 0 74 0, 0.0 -6,-0.0 0, 0.0 -9,-0.0 -0.424 25.3-135.9 -69.8 139.1 -19.6 5.1 -11.6 39 39 A G - 0 0 37 -2,-0.1 32,-0.1 1,-0.0 -7,-0.0 0.925 58.6 -85.2 -60.5 -46.9 -21.1 1.6 -11.6 40 40 A N S S+ 0 0 71 33,-0.1 33,-0.1 34,-0.1 31,-0.1 -0.208 104.2 5.1 175.0 -70.4 -23.5 2.3 -8.7 41 41 A M - 0 0 104 29,-0.1 30,-0.2 2,-0.1 32,-0.0 0.778 66.4-169.1-105.6 -42.9 -22.0 1.9 -5.2 42 42 A I + 0 0 26 1,-0.2 2,-0.5 28,-0.1 29,-0.2 0.935 30.4 153.2 48.3 56.2 -18.4 1.2 -5.9 43 43 A R E -C 70 0A 111 27,-2.3 27,-1.5 8,-0.0 2,-0.3 -0.968 27.1-162.2-121.2 126.9 -17.7 0.3 -2.3 44 44 A L E -C 69 0A 13 -2,-0.5 7,-0.6 25,-0.3 2,-0.6 -0.721 13.2-134.0-105.4 156.2 -15.0 -2.1 -1.1 45 45 A V E -CD 68 50A 46 23,-2.5 23,-0.7 -2,-0.3 2,-0.6 -0.939 13.7-161.3-114.6 118.0 -14.6 -4.0 2.2 46 46 A Y E > S- D 0 49A 6 3,-2.1 3,-2.2 -2,-0.6 21,-0.1 -0.866 77.4 -22.6-101.5 115.8 -11.3 -4.0 3.9 47 47 A Q T 3 S- 0 0 160 -2,-0.6 -1,-0.2 19,-0.5 3,-0.1 0.843 128.1 -51.7 55.8 34.8 -10.8 -6.7 6.5 48 48 A G T 3 S+ 0 0 64 1,-0.3 -1,-0.3 -3,-0.2 2,-0.3 0.493 118.4 118.1 81.5 2.6 -14.6 -6.9 6.8 49 49 A K E < -D 46 0A 129 -3,-2.2 -3,-2.1 3,-0.0 -1,-0.3 -0.714 54.3-140.4-103.1 154.4 -14.7 -3.2 7.3 50 50 A Q E +D 45 0A 132 -2,-0.3 -5,-0.1 -5,-0.2 -7,-0.0 -0.756 66.1 33.3-112.0 159.2 -16.4 -0.6 5.2 51 51 A L + 0 0 115 -7,-0.6 -1,-0.1 -2,-0.3 -6,-0.1 0.901 48.3 166.8 63.0 102.7 -15.4 2.9 4.1 52 52 A E > + 0 0 23 2,-0.1 3,-1.4 -8,-0.1 -28,-0.3 0.360 50.7 98.3-123.8 -2.2 -11.6 3.2 3.7 53 53 A D G > S+ 0 0 68 1,-0.3 3,-0.9 -29,-0.2 -28,-0.3 0.874 83.4 54.6 -54.5 -39.8 -11.4 6.6 1.9 54 54 A E G 3 S+ 0 0 141 1,-0.3 -1,-0.3 2,-0.1 4,-0.2 0.727 100.7 62.2 -67.3 -21.4 -10.6 8.2 5.3 55 55 A K G <> + 0 0 74 -3,-1.4 4,-1.7 1,-0.2 -1,-0.3 -0.159 67.8 134.6 -96.9 38.7 -7.7 5.8 5.6 56 56 A R T X4 S+ 0 0 118 -3,-0.9 3,-1.2 2,-0.2 4,-0.4 0.965 83.0 19.1 -48.6 -80.3 -6.0 7.1 2.5 57 57 A L G >> S+ 0 0 83 -36,-0.4 3,-1.8 1,-0.3 4,-0.6 0.850 120.4 66.0 -61.9 -35.0 -2.4 7.4 3.8 58 58 A K G >4 S+ 0 0 143 1,-0.3 3,-0.5 -4,-0.2 -1,-0.3 0.774 98.3 54.5 -58.2 -26.0 -3.3 5.0 6.7 59 59 A D G XX S+ 0 0 3 -4,-1.7 3,-1.0 -3,-1.2 4,-0.9 0.633 93.7 69.8 -82.3 -15.2 -3.8 2.4 4.0 60 60 A Y G <4 S+ 0 0 90 -3,-1.8 -1,-0.2 -4,-0.4 -2,-0.2 0.678 88.4 64.3 -75.1 -17.7 -0.2 3.0 2.7 61 61 A Q G << S+ 0 0 160 -4,-0.6 -1,-0.2 -3,-0.5 -2,-0.2 0.511 96.9 61.0 -82.4 -5.1 1.2 1.5 5.9 62 62 A M T <4 + 0 0 91 -3,-1.0 -2,-0.2 3,-0.1 -1,-0.1 0.959 56.3 166.3 -83.5 -68.7 -0.4 -1.9 4.8 63 63 A S S < S+ 0 0 38 -4,-0.9 -60,-0.1 2,-0.1 -3,-0.1 0.775 76.5 55.3 55.2 26.4 1.3 -2.7 1.5 64 64 A A S S+ 0 0 86 -63,-0.1 2,-0.5 2,-0.0 -61,-0.2 0.059 72.3 122.3-178.4 46.7 -0.2 -6.2 2.0 65 65 A G E -b 3 0A 11 -63,-0.6 -61,-0.5 -6,-0.1 -2,-0.1 -0.968 56.4-126.4-127.1 120.6 -3.9 -6.1 2.5 66 66 A A E -b 4 0A 61 -2,-0.5 -19,-0.5 -63,-0.2 2,-0.4 -0.346 27.4-159.0 -62.1 136.6 -6.5 -7.9 0.4 67 67 A T E -b 5 0A 1 -63,-3.2 -61,-1.7 -21,-0.1 2,-0.5 -0.955 10.2-166.9-123.4 140.1 -9.2 -5.6 -1.1 68 68 A F E -bC 6 45A 72 -23,-0.7 -23,-2.5 -2,-0.4 2,-0.3 -0.953 8.0-158.0-130.1 113.6 -12.6 -6.5 -2.4 69 69 A H E - C 0 44A 15 -63,-1.7 2,-0.4 -2,-0.5 -61,-0.3 -0.653 5.2-157.8 -90.3 145.0 -14.7 -4.0 -4.3 70 70 A M E + C 0 43A 86 -27,-1.5 -27,-2.3 -2,-0.3 2,-0.4 -0.985 12.2 177.0-127.5 127.8 -18.5 -4.3 -4.6 71 71 A V + 0 0 47 -2,-0.4 2,-0.6 -29,-0.2 -2,-0.0 -0.931 1.4 179.6-134.1 110.6 -20.7 -2.8 -7.3 72 72 A V + 0 0 53 -2,-0.4 2,-0.5 2,-0.0 -2,-0.0 -0.914 8.9 164.2-114.8 108.2 -24.4 -3.4 -7.5 73 73 A A + 0 0 60 -2,-0.6 -33,-0.1 -33,-0.1 -2,-0.0 -0.848 16.1 140.8-126.7 95.7 -26.3 -1.7 -10.3 74 74 A L + 0 0 138 -2,-0.5 3,-0.1 1,-0.1 -1,-0.1 -0.052 45.5 98.4-122.3 30.0 -29.8 -3.1 -11.0 75 75 A R S S- 0 0 202 1,-0.3 2,-0.3 0, 0.0 -1,-0.1 0.955 94.8 -40.4 -80.7 -57.4 -31.5 0.2 -11.8 76 76 A A - 0 0 99 2,-0.0 -1,-0.3 1,-0.0 0, 0.0 -0.972 38.3-172.3-168.8 157.2 -31.5 0.1 -15.6 77 77 A G 0 0 75 -2,-0.3 -1,-0.0 -3,-0.1 -4,-0.0 -0.128 360.0 360.0-153.0 47.1 -29.4 -0.8 -18.6 78 78 A C 0 0 187 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.609 360.0 360.0-170.3 360.0 -31.1 0.4 -21.7