==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-JAN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN, DNA BINDING PROTEIN04-MAY-12 2LSS . COMPND 2 MOLECULE: COLD SHOCK-LIKE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA RICKETTSII; . AUTHOR C.T.VELDKAMP,F.C.PETERSON,K.P.GERARDEN,A.M.FUCHS,J.M.KOCH,M. . 70 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4728.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 72.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 4.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 27 38.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 169 0, 0.0 2,-0.3 0, 0.0 55,-0.2 0.000 360.0 360.0 360.0 64.4 4.9 13.1 2.8 2 2 A A E -A 55 0A 37 53,-1.2 53,-3.5 3,-0.0 2,-0.3 -0.876 360.0-164.4-162.8 136.6 1.5 11.8 3.8 3 3 A T E + 0 0 98 -2,-0.3 51,-0.2 51,-0.3 63,-0.0 -0.921 63.2 14.7-129.6 153.7 0.3 9.9 6.8 4 4 A N E S- 0 0 124 -2,-0.3 50,-0.2 1,-0.2 -1,-0.2 0.839 82.6-177.8 58.1 42.0 -2.7 7.8 8.0 5 5 A I E -A 53 0A 30 48,-3.2 48,-1.2 -3,-0.2 2,-0.4 -0.304 22.1-128.9 -75.7 150.5 -3.9 7.5 4.4 6 6 A V E +A 52 0A 75 46,-0.2 2,-0.3 -2,-0.0 17,-0.2 -0.783 44.6 125.4 -96.4 138.6 -7.0 5.8 3.2 7 7 A G E -A 51 0A 1 44,-0.8 44,-3.8 -2,-0.4 2,-0.4 -0.951 46.1-120.5-176.7 171.0 -7.1 3.3 0.5 8 8 A K E -AB 50 22A 54 14,-2.9 14,-2.8 -2,-0.3 2,-0.6 -0.934 45.2 -93.8-119.5 143.6 -8.0 -0.1 -0.6 9 9 A V E - B 0 21A 1 40,-3.3 39,-1.4 -2,-0.4 12,-0.3 -0.463 37.1-168.2 -58.7 107.8 -5.6 -2.7 -1.9 10 10 A K E - 0 0 61 10,-1.3 2,-0.3 -2,-0.6 11,-0.2 0.892 67.4 -32.9 -69.2 -43.1 -5.9 -2.0 -5.6 11 11 A W E - B 0 20A 105 9,-1.9 9,-2.2 -3,-0.1 -1,-0.4 -0.901 59.7-173.1-171.9 155.3 -4.1 -5.3 -6.3 12 12 A Y E - B 0 19A 31 -2,-0.3 2,-0.7 7,-0.3 7,-0.3 -0.885 9.4-161.3-160.0 121.8 -1.5 -7.4 -4.8 13 13 A N E >>> - B 0 18A 89 5,-2.7 3,-1.8 -2,-0.3 4,-1.7 -0.918 6.0-160.9-111.2 108.3 0.3 -10.4 -6.0 14 14 A S T 345S+ 0 0 83 -2,-0.7 -1,-0.1 1,-0.3 5,-0.1 0.707 84.3 76.8 -58.2 -23.6 1.9 -12.3 -3.2 15 15 A T T 345S+ 0 0 127 1,-0.2 -1,-0.3 3,-0.1 -2,-0.0 0.848 117.8 14.4 -57.5 -36.2 4.2 -14.1 -5.7 16 16 A K T <45S- 0 0 150 -3,-1.8 -1,-0.2 2,-0.2 -2,-0.2 0.502 100.5-127.4-114.7 -9.1 6.3 -10.9 -6.0 17 17 A N T <5S+ 0 0 52 -4,-1.7 2,-0.3 1,-0.3 -3,-0.2 0.697 71.9 119.7 63.5 25.0 4.9 -9.2 -2.9 18 18 A F E < +B 13 0A 100 -5,-1.1 -5,-2.7 15,-0.1 2,-0.3 -0.804 26.2 122.8-116.4 158.3 4.2 -6.2 -5.0 19 19 A G E -BC 12 32A 1 13,-0.9 13,-2.4 -2,-0.3 2,-0.3 -0.964 44.3 -98.3 177.5-167.7 1.0 -4.4 -5.8 20 20 A F E -BC 11 31A 54 -9,-2.2 -9,-1.9 -2,-0.3 -10,-1.3 -0.861 17.2-148.6-134.7 168.7 -0.8 -1.1 -5.6 21 21 A I E +BC 9 30A 0 9,-1.9 9,-1.4 -2,-0.3 2,-0.3 -0.994 15.0 171.9-140.7 138.7 -3.3 0.7 -3.5 22 22 A E E -B 8 0A 73 -14,-2.8 -14,-2.9 -2,-0.3 2,-0.3 -0.988 30.3-123.2-143.0 141.7 -6.0 3.2 -4.3 23 23 A Q >> - 0 0 53 -16,-0.3 3,-2.4 -2,-0.3 4,-2.0 -0.667 25.7-119.2 -83.8 151.2 -8.7 4.6 -2.1 24 24 A D T 34 S+ 0 0 99 1,-0.3 -1,-0.1 -2,-0.3 -17,-0.0 0.689 111.8 65.7 -59.3 -19.7 -12.2 4.2 -3.3 25 25 A N T 34 S- 0 0 138 1,-0.0 -1,-0.3 -19,-0.0 -18,-0.0 0.432 133.5 -76.3 -86.2 1.1 -12.5 8.0 -3.4 26 26 A G T <4 + 0 0 59 -3,-2.4 -2,-0.2 1,-0.1 2,-0.2 0.815 66.4 175.6 107.1 45.9 -10.0 8.3 -6.1 27 27 A G < - 0 0 23 -4,-2.0 -1,-0.1 1,-0.1 2,-0.1 -0.495 30.3-109.7 -80.7 154.7 -6.6 7.7 -4.6 28 28 A K - 0 0 179 -2,-0.2 2,-1.4 1,-0.1 -7,-0.2 -0.277 41.3 -76.9 -83.8 169.7 -3.6 7.6 -6.9 29 29 A D + 0 0 100 -9,-0.1 2,-0.6 -7,-0.1 33,-0.3 -0.502 56.8 167.4 -70.9 90.4 -1.4 4.7 -7.9 30 30 A V E -C 21 0A 7 -9,-1.4 -9,-1.9 -2,-1.4 2,-0.3 -0.944 28.6-136.0-105.3 123.4 0.8 4.2 -4.9 31 31 A F E -Cd 20 63A 51 31,-2.0 33,-2.7 -2,-0.6 2,-0.5 -0.577 10.4-134.1 -83.5 141.9 2.7 1.0 -5.0 32 32 A V E -Cd 19 64A 2 -13,-2.4 -13,-0.9 -2,-0.3 2,-0.3 -0.819 17.8-161.1 -98.0 130.5 2.9 -1.2 -2.0 33 33 A H >> - 0 0 80 31,-1.1 3,-2.1 -2,-0.5 4,-0.8 -0.854 29.1-117.9-109.4 148.4 6.3 -2.6 -1.1 34 34 A K H 3> S+ 0 0 69 -2,-0.3 4,-3.4 1,-0.3 3,-0.3 0.800 110.7 70.4 -57.5 -30.1 6.9 -5.6 1.2 35 35 A S H 3> S+ 0 0 72 1,-0.3 4,-1.1 2,-0.2 -1,-0.3 0.812 97.7 53.4 -54.4 -27.8 8.8 -3.4 3.7 36 36 A A H <> S+ 0 0 0 -3,-2.1 31,-1.4 28,-0.3 4,-0.7 0.871 109.8 45.7 -74.3 -39.5 5.4 -1.8 4.4 37 37 A V H >X>S+ 0 0 6 -4,-0.8 4,-2.6 -3,-0.3 5,-1.9 0.963 113.4 49.5 -62.0 -50.7 4.0 -5.2 5.1 38 38 A D H 3<5S+ 0 0 92 -4,-3.4 -2,-0.2 1,-0.3 -1,-0.2 0.695 95.0 73.9 -64.8 -22.6 7.0 -6.0 7.2 39 39 A A H 3<5S+ 0 0 66 -4,-1.1 -1,-0.3 -5,-0.3 -2,-0.2 0.868 124.2 8.4 -58.5 -35.7 6.5 -2.8 9.1 40 40 A A H <<5S- 0 0 41 -3,-1.4 -2,-0.2 -4,-0.7 -1,-0.2 0.504 105.1-118.0-116.9 -13.9 3.6 -4.3 10.8 41 41 A G T <5 - 0 0 33 -4,-2.6 -3,-0.3 -5,-0.2 2,-0.2 0.953 34.9-155.8 65.3 55.2 4.1 -7.8 9.5 42 42 A L < - 0 0 23 -5,-1.9 -1,-0.2 1,-0.1 3,-0.1 -0.435 4.3-148.0 -64.2 126.0 0.8 -7.8 7.8 43 43 A H - 0 0 180 1,-0.2 2,-0.3 -2,-0.2 -1,-0.1 0.841 67.6 -4.9 -73.8 -34.5 -0.2 -11.4 7.4 44 44 A S - 0 0 80 -7,-0.0 2,-0.4 2,-0.0 -1,-0.2 -0.974 55.3-174.9-161.4 143.7 -2.1 -11.2 4.2 45 45 A L + 0 0 13 -2,-0.3 2,-0.3 -3,-0.1 -31,-0.2 -0.993 14.5 152.0-139.5 144.5 -3.3 -8.8 1.6 46 46 A E > - 0 0 98 -2,-0.4 3,-1.7 -33,-0.1 -37,-0.3 -0.936 55.2 -56.0-158.2 171.3 -5.4 -9.1 -1.4 47 47 A E T 3 S+ 0 0 131 -2,-0.3 -37,-0.2 -35,-0.2 3,-0.1 -0.243 117.5 37.2 -55.9 133.4 -7.8 -7.0 -3.5 48 48 A G T 3 S+ 0 0 33 -39,-1.4 -1,-0.2 1,-0.3 2,-0.2 -0.085 80.3 127.0 115.4 -32.8 -10.6 -5.6 -1.4 49 49 A Q < - 0 0 61 -3,-1.7 -40,-3.3 -41,-0.1 2,-0.4 -0.369 56.3-134.7 -64.0 126.7 -8.8 -4.9 1.8 50 50 A D E -A 8 0A 44 -42,-0.3 20,-0.7 -2,-0.2 2,-0.4 -0.678 31.8-171.2 -73.8 133.4 -9.0 -1.4 3.2 51 51 A V E -AE 7 69A 0 -44,-3.8 -44,-0.8 -2,-0.4 2,-0.5 -0.990 20.7-153.9-137.8 141.4 -5.6 -0.4 4.2 52 52 A I E +AE 6 68A 56 16,-3.0 16,-1.6 -2,-0.4 2,-0.3 -0.961 32.8 151.7-114.9 124.2 -4.3 2.5 6.0 53 53 A F E -A 5 0A 6 -48,-1.2 -48,-3.2 -2,-0.5 2,-0.3 -0.814 40.3-114.3-143.4 179.4 -0.8 3.5 5.3 54 54 A D E - E 0 65A 31 11,-3.5 11,-2.9 -2,-0.3 2,-0.5 -0.845 28.8-139.6-117.4 158.8 1.7 6.3 5.2 55 55 A L E +AE 2 64A 27 -53,-3.5 -53,-1.2 -2,-0.3 2,-0.3 -0.977 21.2 172.4-132.9 125.3 3.2 7.5 2.0 56 56 A E E - E 0 63A 94 7,-1.5 7,-2.1 -2,-0.5 2,-0.2 -0.872 30.5-113.3-121.2 157.3 6.7 8.6 1.3 57 57 A E E - E 0 62A 87 -2,-0.3 2,-0.6 5,-0.2 5,-0.2 -0.583 4.9-149.3-100.2 155.2 8.1 9.4 -2.0 58 58 A K E > S- E 0 61A 115 3,-2.8 3,-3.0 -2,-0.2 2,-2.3 -0.868 77.7 -62.4-118.8 85.1 10.7 7.8 -4.2 59 59 A Q T 3 S- 0 0 194 -2,-0.6 -2,-0.1 1,-0.3 3,-0.0 -0.459 124.6 -19.9 65.8 -76.0 12.2 10.9 -5.9 60 60 A G T 3 S+ 0 0 72 -2,-2.3 -1,-0.3 -3,-0.0 2,-0.1 0.364 123.2 95.1-133.3 -4.7 8.9 11.6 -7.5 61 61 A K E < - E 0 58A 130 -3,-3.0 -3,-2.8 -31,-0.0 2,-0.5 -0.423 68.0-126.6 -89.1 165.7 7.2 8.2 -7.2 62 62 A A E + E 0 57A 27 -33,-0.3 -31,-2.0 -5,-0.2 2,-0.4 -0.954 23.8 179.1-123.0 123.2 4.9 7.1 -4.4 63 63 A Y E -dE 31 56A 69 -7,-2.1 -7,-1.5 -2,-0.5 2,-0.3 -0.982 25.5-127.4-125.6 132.9 5.2 3.9 -2.2 64 64 A A E +dE 32 55A 0 -33,-2.7 -31,-1.1 -2,-0.4 2,-0.3 -0.571 33.7 171.1 -78.4 135.0 2.9 2.9 0.6 65 65 A V E + E 0 54A 33 -11,-2.9 -11,-3.5 -2,-0.3 -29,-0.1 -0.879 48.8 39.0-137.6 165.9 4.5 2.1 3.9 66 66 A N E S- 0 0 62 -2,-0.3 2,-0.2 -13,-0.2 -1,-0.2 0.982 76.0-158.1 56.5 64.1 3.3 1.4 7.5 67 67 A L E + 0 0 0 -31,-1.4 2,-0.4 -14,-0.2 -14,-0.2 -0.552 18.0 179.1 -80.2 142.7 0.3 -0.7 6.5 68 68 A R E - E 0 52A 136 -16,-1.6 -16,-3.0 -2,-0.2 2,-1.2 -0.993 28.9-124.9-138.8 131.6 -2.6 -1.2 8.8 69 69 A I E E 0 51A 69 -2,-0.4 -18,-0.2 -18,-0.2 -19,-0.0 -0.690 360.0 360.0 -90.6 96.6 -5.6 -3.3 7.9 70 70 A K 0 0 172 -2,-1.2 -1,-0.2 -20,-0.7 -19,-0.1 0.917 360.0 360.0 46.1 360.0 -8.8 -1.4 8.3