==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JUL-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 19-JUN-12 2LUP . COMPND 2 MOLECULE: RNA (32-MER); . SOURCE 2 SYNTHETIC: YES; . AUTHOR Z.WANG,J.FEIGON . 90 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6376.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 82.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 17.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 15.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 34.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 364 B G 0 0 94 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-142.3 1.0 4.4 15.8 2 365 B S + 0 0 68 4,-0.0 2,-0.3 8,-0.0 67,-0.0 -0.616 360.0 98.2-142.2 78.3 3.1 4.7 12.6 3 366 B L S >> S- 0 0 89 -2,-0.2 3,-2.7 62,-0.0 4,-0.6 -0.990 82.9 -34.3-159.8 159.9 2.2 2.2 9.9 4 367 B D H 3>>S+ 0 0 58 1,-0.3 4,-2.4 -2,-0.3 5,-0.5 0.124 135.4 35.0 26.1 -96.6 0.2 1.7 6.7 5 368 B M H 3>5S+ 0 0 98 1,-0.3 4,-1.8 2,-0.2 -1,-0.3 0.910 127.3 40.8 -41.7 -56.2 -2.7 4.0 7.5 6 369 B N H <>5S+ 0 0 30 -3,-2.7 4,-2.0 2,-0.2 -1,-0.3 0.868 117.2 53.2 -63.0 -34.4 -0.4 6.4 9.3 7 370 B A H >X5S+ 0 0 0 -4,-0.6 4,-2.0 2,-0.2 3,-1.2 0.999 106.4 46.0 -62.6 -72.2 2.2 5.8 6.6 8 371 B K H 3X>S+ 0 0 115 -4,-2.4 4,-2.1 1,-0.3 5,-0.7 0.838 113.1 55.9 -39.2 -38.2 0.1 6.6 3.5 9 372 B R H 3XXS+ 0 0 109 -4,-1.8 5,-1.7 -5,-0.5 4,-0.7 0.933 109.5 44.1 -61.8 -46.5 -1.0 9.6 5.5 10 373 B Q H S+ 0 0 27 -4,-2.0 5,-2.1 -3,-1.2 4,-0.6 0.978 115.4 47.2 -61.0 -59.6 2.6 10.7 6.0 11 374 B L H X5S+ 0 0 19 -4,-2.0 4,-0.9 3,-0.2 -2,-0.2 0.949 129.9 18.4 -46.4 -70.0 3.7 10.0 2.3 12 375 B Y H X5S+ 0 0 163 -4,-2.1 4,-2.1 -5,-0.2 -3,-0.2 0.979 133.2 39.3 -72.0 -61.2 0.8 11.8 0.6 13 376 B S H < - 0 0 57 5,-0.0 3,-1.2 3,-0.0 5,-0.1 -0.944 39.7-107.0-149.7 168.0 6.1 -17.0 -5.5 32 395 B A T 3 S+ 0 0 108 -2,-0.3 0, 0.0 1,-0.3 0, 0.0 0.359 122.5 47.7 -81.1 7.7 4.5 -20.1 -4.0 33 396 B V T 3 S+ 0 0 119 1,-0.0 -1,-0.3 2,-0.0 0, 0.0 0.138 136.9 2.7-129.3 13.6 8.0 -21.2 -3.0 34 397 B D < - 0 0 75 -3,-1.2 -2,-0.2 21,-0.1 -1,-0.0 0.122 62.2-178.0 163.5 63.1 9.0 -17.9 -1.4 35 398 B P + 0 0 58 0, 0.0 -3,-0.1 0, 0.0 21,-0.1 0.868 40.9 133.0 -39.1 -51.4 6.2 -15.2 -1.4 36 399 B N - 0 0 84 -6,-0.1 2,-0.4 1,-0.1 19,-0.2 0.431 34.9-176.2 -6.7 123.4 8.7 -12.8 0.2 37 400 B S E - B 0 54A 2 17,-2.4 17,-1.5 -7,-0.1 2,-0.4 -1.000 14.6-152.9-140.5 138.0 8.6 -9.5 -1.6 38 401 B I E -AB 27 53A 46 -11,-2.0 -11,-2.7 -2,-0.4 2,-0.3 -0.894 9.3-148.7-114.3 141.7 10.6 -6.3 -1.2 39 402 B V E -AB 26 52A 6 13,-3.1 13,-1.6 -2,-0.4 2,-0.6 -0.781 7.3-140.8-107.9 152.4 9.4 -2.7 -2.0 40 403 B E E -AB 25 51A 43 -15,-3.0 -15,-1.9 -2,-0.3 2,-1.5 -0.875 9.8-159.2-115.6 98.9 11.5 0.3 -3.2 41 404 B C E +AB 24 50A 0 9,-1.6 9,-1.8 -2,-0.6 8,-1.7 -0.614 41.1 136.8 -78.4 92.3 10.3 3.5 -1.6 42 405 B R E -AB 23 48A 79 -2,-1.5 -19,-0.8 -19,-1.4 2,-0.3 -0.958 29.6-175.5-139.1 157.4 11.7 6.0 -4.1 43 406 B V E >> +AB 22 47A 8 4,-2.7 3,-1.3 -2,-0.3 4,-1.3 -0.976 64.5 32.5-149.0 158.9 10.7 9.2 -5.9 44 407 B G T 34 S- 0 0 45 -23,-2.2 -22,-0.1 -2,-0.3 -23,-0.1 0.452 113.1 -87.4 73.6 -1.6 12.0 11.5 -8.5 45 408 B D T 34 S+ 0 0 123 -24,-0.3 -1,-0.3 2,-0.2 3,-0.1 0.558 128.9 51.9 76.4 8.0 13.7 8.6 -10.1 46 409 B G T <4 S+ 0 0 69 -3,-1.3 2,-0.4 1,-0.1 -2,-0.2 0.218 86.3 88.6-157.8 17.6 16.7 9.2 -7.9 47 410 B T E < -B 43 0A 46 -4,-1.3 -4,-2.7 -24,-0.0 2,-0.6 -0.981 47.9-168.8-128.7 122.5 15.4 9.4 -4.3 48 411 B V E -B 42 0A 73 -2,-0.4 -6,-0.3 -6,-0.3 3,-0.1 -0.889 7.9-178.3-113.2 103.5 15.0 6.4 -2.0 49 412 B L E - 0 0 5 -8,-1.7 2,-0.3 -2,-0.6 21,-0.2 0.775 65.9 -68.2 -67.8 -25.2 13.0 7.1 1.2 50 413 B G E -B 41 0A 10 -9,-1.8 -9,-1.6 -3,-0.1 2,-0.3 -0.991 47.3-101.8 165.6-165.4 13.6 3.5 2.2 51 414 B T E -B 40 0A 56 -2,-0.3 2,-0.3 -11,-0.2 -11,-0.2 -0.983 21.4-166.0-150.7 157.4 12.9 -0.1 1.6 52 415 B G E -B 39 0A 2 -13,-1.6 -13,-3.1 -2,-0.3 2,-0.3 -0.998 3.3-170.0-149.7 152.3 10.7 -2.9 2.9 53 416 B V E +B 38 0A 76 -2,-0.3 2,-0.3 -15,-0.3 -15,-0.2 -0.986 12.1 162.2-141.4 150.2 10.3 -6.7 2.8 54 417 B G E > -B 37 0A 7 -17,-1.5 -17,-2.4 -2,-0.3 3,-0.6 -0.991 43.0-122.2-163.0 161.3 7.7 -9.2 4.0 55 418 B R T 3 S+ 0 0 188 -2,-0.3 -1,-0.1 -19,-0.2 -21,-0.1 0.908 118.8 36.3 -74.9 -42.9 6.3 -12.8 3.6 56 419 B N T 3 S- 0 0 84 1,-0.1 2,-4.7 -21,-0.1 -1,-0.2 0.025 106.6-130.9 -98.1 27.3 2.8 -11.7 2.7 57 420 B I S X> S+ 0 0 66 -3,-0.6 4,-2.5 1,-0.2 3,-2.2 -0.074 94.7 86.8 53.4 -45.0 4.3 -8.8 0.7 58 421 B K H 3> S+ 0 0 112 -2,-4.7 4,-3.7 1,-0.3 5,-0.3 0.949 84.8 55.8 -44.6 -56.8 1.9 -6.3 2.4 59 422 B I H 3> S+ 0 0 53 1,-0.3 4,-1.7 2,-0.2 -1,-0.3 0.791 110.1 48.9 -46.3 -25.0 4.5 -6.0 5.3 60 423 B A H <> S+ 0 0 0 -3,-2.2 4,-1.7 2,-0.2 -2,-0.3 0.927 112.4 44.6 -79.5 -48.7 6.7 -5.1 2.4 61 424 B G H X S+ 0 0 30 -4,-2.5 4,-1.7 2,-0.2 -2,-0.2 0.967 122.2 38.6 -58.7 -52.8 4.2 -2.6 1.0 62 425 B I H >X S+ 0 0 31 -4,-3.7 4,-2.1 1,-0.2 3,-0.9 0.995 112.2 54.7 -58.4 -67.2 3.6 -1.2 4.4 63 426 B R H 3X S+ 0 0 124 -4,-1.7 4,-0.9 -5,-0.3 -1,-0.2 0.784 106.0 58.8 -36.3 -32.2 7.2 -1.4 5.6 64 427 B A H >X S+ 0 0 0 -4,-1.7 4,-1.6 2,-0.2 3,-0.5 0.975 108.8 40.1 -64.5 -55.1 7.8 0.6 2.4 65 428 B A H XX S+ 0 0 10 -4,-1.7 4,-1.9 -3,-0.9 3,-1.0 0.971 114.5 52.1 -56.9 -55.7 5.5 3.5 3.5 66 429 B E H 3< S+ 0 0 61 -4,-2.1 -1,-0.3 1,-0.3 -2,-0.2 0.731 106.5 58.8 -53.5 -21.3 6.8 3.2 7.1 67 430 B N H X< S+ 0 0 9 -4,-0.9 3,-1.1 -3,-0.5 -1,-0.3 0.886 103.3 48.7 -75.7 -41.3 10.2 3.5 5.4 68 431 B A H X< S+ 0 0 5 -4,-1.6 3,-1.0 -3,-1.0 -2,-0.2 0.869 111.1 49.5 -67.2 -37.7 9.5 6.8 3.8 69 432 B L T 3< S+ 0 0 30 -4,-1.9 -1,-0.3 1,-0.2 3,-0.2 0.316 95.1 77.9 -83.9 9.6 8.2 8.3 7.0 70 433 B R T < S+ 0 0 163 -3,-1.1 2,-0.7 -5,-0.2 -1,-0.2 0.569 80.9 68.6 -92.3 -11.7 11.3 7.1 8.8 71 434 B D X> + 0 0 63 -3,-1.0 4,-4.1 -4,-0.2 3,-0.8 -0.603 54.5 167.5-109.2 71.7 13.5 9.9 7.4 72 435 B K H 3>>S+ 0 0 147 -2,-0.7 4,-3.1 1,-0.3 5,-0.6 0.928 80.4 55.4 -45.8 -54.0 12.2 13.0 9.2 73 436 B K H 3>5S+ 0 0 177 1,-0.2 4,-1.5 2,-0.2 -1,-0.3 0.870 115.9 38.5 -48.2 -40.5 15.2 14.9 8.0 74 437 B M H <>5S+ 0 0 28 -3,-0.8 4,-2.0 2,-0.2 -2,-0.2 0.891 116.3 52.6 -77.7 -41.0 14.3 13.8 4.5 75 438 B L H >X5S+ 0 0 14 -4,-4.1 4,-1.5 2,-0.2 3,-0.7 0.988 118.1 34.4 -56.2 -65.0 10.5 14.3 5.1 76 439 B D H 3X5S+ 0 0 117 -4,-3.1 4,-1.8 1,-0.3 3,-0.3 0.925 110.4 65.8 -55.9 -46.4 10.8 17.8 6.4 77 440 B F H 3XX S+ 0 0 140 -4,-1.8 4,-2.9 2,-0.2 3,-1.1 0.966 117.4 52.3 -53.8 -57.3 10.9 23.2 2.6 81 444 B Q H 3X S+ 0 0 76 -4,-2.4 4,-1.6 1,-0.3 3,-0.2 0.930 106.0 53.1 -41.9 -62.9 11.9 22.0 -0.8 82 445 B R H 3< S+ 0 0 124 -4,-3.9 -1,-0.3 1,-0.3 -2,-0.2 0.817 114.1 44.8 -43.2 -37.3 8.2 21.7 -1.8 83 446 B A H << S+ 0 0 76 -4,-1.6 -1,-0.3 -3,-1.1 -2,-0.2 0.883 120.0 39.9 -76.7 -41.1 7.9 25.3 -0.7 84 447 B A H < S+ 0 0 60 -4,-2.9 -2,-0.2 -3,-0.2 -3,-0.2 0.997 71.7 145.5 -70.3 -72.1 11.1 26.5 -2.4 85 448 B I < - 0 0 40 -4,-1.6 4,-0.1 -5,-0.1 -3,-0.0 0.815 41.8-142.4 27.9 100.2 11.1 24.6 -5.7 86 449 B P - 0 0 91 0, 0.0 2,-0.1 0, 0.0 3,-0.1 0.128 24.4 -78.3 -71.6-169.0 12.7 27.0 -8.2 87 450 B R S S+ 0 0 210 1,-0.1 -2,-0.0 2,-0.0 0, 0.0 -0.367 99.0 47.9 -90.3 172.6 11.7 27.6 -11.9 88 451 B S S S+ 0 0 132 1,-0.2 2,-0.4 -2,-0.1 -1,-0.1 0.993 72.9 156.5 60.3 67.3 12.5 25.6 -14.9 89 452 B E 0 0 122 1,-0.1 -1,-0.2 -3,-0.1 -2,-0.0 -0.967 360.0 360.0-127.0 141.3 11.5 22.1 -13.6 90 453 B S 0 0 186 -2,-0.4 -1,-0.1 -71,-0.0 -2,-0.0 0.734 360.0 360.0-113.0 360.0 10.4 19.0 -15.5