==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-JAN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 11-JUL-12 2LVS . COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HYPERTHERMUS BUTYLICUS; . AUTHOR C.S.KENCHAPPA,P.O.HEIDARSSON,R.A.GARRETT,F.M.POULSEN . 105 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9195.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 74 70.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 53 50.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 1 2 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 214 0, 0.0 2,-0.1 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 157.5 10.8 15.0 6.7 2 2 A P - 0 0 80 0, 0.0 4,-0.2 0, 0.0 0, 0.0 -0.407 360.0-169.9 -69.7 141.7 9.7 11.4 7.3 3 3 A S S > S+ 0 0 97 2,-0.1 4,-1.5 -2,-0.1 3,-0.3 0.803 83.7 56.7 -99.0 -40.4 11.0 8.7 4.9 4 4 A V H > S+ 0 0 127 1,-0.2 4,-1.0 2,-0.2 -1,-0.1 0.841 107.0 52.0 -60.8 -34.0 8.9 5.8 5.9 5 5 A N H > S+ 0 0 96 2,-0.2 4,-0.8 1,-0.2 -1,-0.2 0.815 101.1 62.8 -72.3 -31.3 5.8 7.8 5.2 6 6 A D H >> S+ 0 0 98 -3,-0.3 3,-1.5 -4,-0.2 4,-0.8 0.958 103.0 46.5 -57.9 -54.7 7.0 8.7 1.8 7 7 A S H >X S+ 0 0 73 -4,-1.5 4,-2.7 1,-0.3 3,-0.9 0.835 100.8 69.4 -57.7 -33.6 7.0 5.1 0.6 8 8 A L H 3X S+ 0 0 62 -4,-1.0 4,-1.7 1,-0.3 -1,-0.3 0.821 95.9 54.2 -54.7 -32.1 3.5 4.7 2.1 9 9 A D H S+ 0 0 38 -4,-1.6 4,-1.0 -3,-0.3 5,-0.6 0.956 109.9 46.8 -72.6 -52.9 -0.4 1.2 -6.5 15 15 A Y H >X5S+ 0 0 85 -4,-1.4 3,-1.5 1,-0.2 4,-0.8 0.953 115.7 44.7 -53.6 -56.0 -3.3 -0.6 -4.8 16 16 A K H 3<5S+ 0 0 49 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.796 109.0 59.5 -59.9 -28.5 -5.7 2.3 -5.5 17 17 A D H 3<5S- 0 0 24 -4,-0.9 -1,-0.3 -5,-0.3 -2,-0.2 0.706 134.3 -86.1 -73.2 -20.3 -4.3 2.4 -9.0 18 18 A G H <<5S+ 0 0 50 -3,-1.5 -3,-0.2 -4,-1.0 -2,-0.2 0.746 77.7 144.1 115.2 48.3 -5.5 -1.1 -9.5 19 19 A V << - 0 0 24 -4,-0.8 -1,-0.2 -5,-0.6 -2,-0.0 -0.962 45.0-122.5-121.8 133.4 -2.7 -3.4 -8.2 20 20 A P >> - 0 0 36 0, 0.0 4,-3.2 0, 0.0 3,-0.7 -0.332 25.0-115.3 -69.7 150.7 -3.2 -6.8 -6.4 21 21 A V H 3> S+ 0 0 25 1,-0.3 4,-2.8 2,-0.2 5,-0.2 0.906 117.0 57.5 -51.1 -46.7 -1.7 -7.4 -3.0 22 22 A K H 3> S+ 0 0 161 1,-0.2 4,-0.8 2,-0.2 -1,-0.3 0.872 114.0 39.2 -53.0 -39.8 0.6 -10.1 -4.4 23 23 A E H X> S+ 0 0 23 -3,-0.7 4,-2.5 2,-0.2 3,-0.6 0.916 111.7 55.6 -77.3 -46.2 2.0 -7.5 -6.8 24 24 A I H 3X S+ 0 0 0 -4,-3.2 4,-3.3 1,-0.2 6,-0.3 0.865 101.5 60.5 -54.3 -38.6 2.0 -4.6 -4.3 25 25 A A H 3X>S+ 0 0 12 -4,-2.8 5,-1.8 -5,-0.2 4,-0.5 0.900 109.4 41.5 -56.7 -43.4 4.1 -6.7 -2.0 26 26 A K H <<5S+ 0 0 146 -4,-0.8 -2,-0.2 -3,-0.6 -1,-0.2 0.942 116.1 48.0 -70.4 -49.4 6.8 -7.0 -4.7 27 27 A R H <5S+ 0 0 137 -4,-2.5 -2,-0.2 1,-0.3 -3,-0.2 0.937 120.9 36.7 -56.8 -50.1 6.6 -3.3 -5.8 28 28 A S H <5S- 0 0 24 -4,-3.3 -1,-0.3 -5,-0.2 -2,-0.2 0.592 106.3-131.7 -78.9 -11.1 6.7 -2.1 -2.2 29 29 A N T <5 + 0 0 142 -4,-0.5 -3,-0.2 -5,-0.3 2,-0.2 0.819 65.9 123.9 63.4 31.1 9.2 -4.9 -1.3 30 30 A N < - 0 0 78 -5,-1.8 -1,-0.2 -6,-0.3 2,-0.2 -0.533 64.2 -92.2-113.0-179.3 7.0 -5.7 1.7 31 31 A S >> - 0 0 67 -2,-0.2 4,-3.2 -3,-0.1 3,-0.9 -0.572 33.4-110.8 -94.3 158.9 5.2 -8.8 3.0 32 32 A M H 3> S+ 0 0 114 1,-0.3 4,-1.5 2,-0.2 5,-0.2 0.839 123.6 48.4 -54.6 -34.6 1.6 -9.8 2.3 33 33 A S H 3> S+ 0 0 74 3,-0.2 4,-0.5 2,-0.2 -1,-0.3 0.709 114.2 47.3 -78.9 -21.4 0.9 -9.1 6.0 34 34 A T H <> S+ 0 0 61 -3,-0.9 4,-1.0 2,-0.1 -2,-0.2 0.919 115.9 40.1 -84.3 -50.5 2.7 -5.7 5.7 35 35 A V H >X S+ 0 0 2 -4,-3.2 4,-2.1 2,-0.2 3,-1.4 0.972 116.8 48.1 -63.1 -56.9 1.1 -4.4 2.5 36 36 A Y H 3X S+ 0 0 124 -4,-1.5 4,-2.2 -5,-0.3 5,-0.2 0.869 107.0 58.8 -52.1 -39.7 -2.4 -5.6 3.2 37 37 A K H 3X S+ 0 0 134 -4,-0.5 4,-0.6 -5,-0.2 -1,-0.3 0.814 107.8 47.0 -60.7 -30.3 -2.1 -4.1 6.7 38 38 A A H X>S+ 0 0 13 -4,-2.8 4,-2.4 2,-0.2 5,-1.8 0.948 110.7 52.2 -70.0 -50.6 -5.5 3.6 4.0 43 43 A E H 3<5S+ 0 0 92 -4,-3.3 -1,-0.2 1,-0.3 -2,-0.2 0.832 104.7 58.9 -54.9 -33.7 -9.0 2.6 2.9 44 44 A A H 3<5S+ 0 0 81 -4,-0.8 -1,-0.3 -5,-0.3 -2,-0.2 0.755 113.3 37.9 -67.9 -24.4 -10.2 3.5 6.4 45 45 A M H <<5S- 0 0 139 -3,-1.7 -2,-0.2 -4,-0.5 -1,-0.2 0.700 115.7-113.0 -97.4 -25.7 -8.9 7.0 5.8 46 46 A G T <5S+ 0 0 20 -4,-2.4 -3,-0.2 -5,-0.1 -4,-0.1 0.708 78.8 123.7 98.6 25.2 -9.9 7.3 2.2 47 47 A R S - 0 0 47 1,-0.1 4,-3.1 4,-0.0 3,-0.3 -0.239 64.2 -96.5 -75.2 167.4 -4.7 -12.7 -16.8 63 63 A E H > S+ 0 0 174 1,-0.3 4,-0.9 2,-0.2 -1,-0.1 0.831 128.7 51.0 -52.6 -34.0 -7.5 -14.5 -14.9 64 64 A E H > S+ 0 0 137 2,-0.2 4,-0.9 1,-0.2 -1,-0.3 0.886 112.0 44.8 -72.0 -40.1 -9.0 -11.1 -14.2 65 65 A E H > S+ 0 0 31 -3,-0.3 4,-3.1 1,-0.2 3,-0.3 0.861 106.6 59.9 -71.7 -36.7 -8.9 -10.2 -17.9 66 66 A L H X S+ 0 0 62 -4,-3.1 4,-1.1 1,-0.2 -1,-0.2 0.815 106.1 48.9 -61.0 -30.5 -10.2 -13.6 -19.0 67 67 A A H < S+ 0 0 50 -4,-0.9 -1,-0.2 -5,-0.3 4,-0.2 0.757 113.8 45.8 -80.0 -26.5 -13.3 -12.9 -17.0 68 68 A T H >< S+ 0 0 55 -4,-0.9 3,-1.0 -3,-0.3 4,-0.3 0.854 109.1 53.4 -83.4 -38.7 -13.8 -9.5 -18.5 69 69 A I H >< S+ 0 0 22 -4,-3.1 3,-2.2 1,-0.3 4,-0.2 0.872 97.7 65.4 -64.0 -37.8 -13.2 -10.5 -22.1 70 70 A R T >X S+ 0 0 150 -4,-1.1 3,-2.7 1,-0.3 4,-0.6 0.752 82.1 80.5 -56.5 -23.7 -15.9 -13.2 -21.8 71 71 A E H X> S+ 0 0 90 -3,-1.0 4,-2.7 1,-0.3 3,-0.8 0.812 72.8 76.5 -53.4 -31.2 -18.3 -10.3 -21.4 72 72 A L H <> S+ 0 0 45 -3,-2.2 4,-0.8 -4,-0.3 5,-0.4 0.735 91.2 56.7 -53.0 -21.9 -18.2 -10.0 -25.2 73 73 A Y H <4 S+ 0 0 201 -3,-2.7 -1,-0.3 3,-0.2 -2,-0.2 0.887 109.1 41.9 -77.7 -41.5 -20.5 -13.0 -25.2 74 74 A L H << S+ 0 0 125 -3,-0.8 -2,-0.2 -4,-0.6 -1,-0.1 0.905 124.3 36.9 -72.0 -42.9 -23.2 -11.5 -23.0 75 75 A K H < S- 0 0 143 -4,-2.7 -2,-0.2 1,-0.0 -1,-0.2 0.690 105.2-129.8 -81.9 -20.1 -23.0 -8.1 -24.8 76 76 A G < + 0 0 54 -4,-0.8 -3,-0.2 -5,-0.5 -4,-0.1 0.650 48.2 164.5 79.3 15.1 -22.5 -9.8 -28.1 77 77 A A - 0 0 22 -5,-0.4 2,-0.2 -6,-0.2 -1,-0.1 -0.015 28.8-125.3 -58.4 169.0 -19.5 -7.5 -28.8 78 78 A T >> - 0 0 71 1,-0.0 4,-2.2 -5,-0.0 3,-1.0 -0.562 31.2 -89.5-112.4 177.8 -17.0 -8.4 -31.6 79 79 A V H 3> S+ 0 0 61 1,-0.3 4,-1.3 2,-0.2 14,-0.1 0.834 128.6 54.5 -55.6 -33.9 -13.2 -8.9 -31.8 80 80 A Y H 3> S+ 0 0 159 2,-0.2 4,-0.9 1,-0.2 -1,-0.3 0.786 108.3 50.0 -71.4 -27.7 -13.0 -5.1 -32.5 81 81 A E H X> S+ 0 0 81 -3,-1.0 4,-1.7 2,-0.2 3,-0.7 0.956 108.1 48.8 -74.9 -53.9 -14.9 -4.4 -29.4 82 82 A I H 3X S+ 0 0 12 -4,-2.2 4,-3.3 1,-0.2 5,-0.4 0.815 102.8 66.9 -55.8 -31.5 -12.9 -6.5 -26.9 83 83 A A H 3X>S+ 0 0 7 -4,-1.3 5,-1.7 -5,-0.3 4,-1.0 0.929 106.1 38.7 -55.8 -48.9 -9.8 -4.9 -28.4 84 84 A R H <<5S+ 0 0 189 -4,-0.9 -1,-0.2 -3,-0.7 -2,-0.2 0.803 116.3 54.5 -72.5 -29.8 -10.7 -1.5 -27.0 85 85 A Q H <5S+ 0 0 118 -4,-1.7 -2,-0.2 1,-0.2 -3,-0.2 0.971 114.4 36.5 -67.9 -55.9 -12.0 -3.1 -23.8 86 86 A L H <5S- 0 0 22 -4,-3.3 -1,-0.2 2,-0.1 -2,-0.2 0.690 112.8-120.0 -70.8 -18.1 -8.9 -5.0 -22.9 87 87 A G T <5S+ 0 0 51 -4,-1.0 -3,-0.2 -5,-0.4 -4,-0.1 0.687 70.5 128.3 85.9 19.5 -6.8 -2.1 -24.3 88 88 A R < - 0 0 52 -5,-1.7 -1,-0.3 -6,-0.4 -2,-0.1 -0.786 60.6-136.2-110.0 153.2 -5.1 -4.2 -26.9 89 89 A P - 0 0 103 0, 0.0 -1,-0.1 0, 0.0 -6,-0.1 0.946 65.2 -79.6 -69.8 -50.9 -4.8 -3.5 -30.7 90 90 A E S > S+ 0 0 108 -7,-0.1 4,-1.9 -8,-0.1 -2,-0.1 0.066 116.1 78.8 176.7 -43.4 -5.6 -7.1 -31.8 91 91 A S H > S+ 0 0 75 1,-0.2 4,-1.3 2,-0.2 3,-0.4 0.937 97.0 50.2 -50.6 -54.1 -2.5 -9.3 -31.5 92 92 A T H >> S+ 0 0 30 1,-0.2 4,-1.6 2,-0.2 3,-0.8 0.919 106.2 55.7 -51.7 -49.3 -3.0 -9.7 -27.7 93 93 A I H 3> S+ 0 0 4 1,-0.3 4,-1.8 2,-0.2 5,-0.3 0.882 101.8 57.9 -51.7 -42.2 -6.7 -10.7 -28.3 94 94 A Y H 3X S+ 0 0 106 -4,-1.9 4,-2.7 -3,-0.4 -1,-0.3 0.876 104.2 51.8 -57.1 -39.3 -5.5 -13.5 -30.6 95 95 A Y H S+ 0 0 45 -4,-1.8 5,-1.8 2,-0.2 4,-1.2 0.937 121.9 51.4 -68.9 -48.1 -8.6 -17.1 -27.7 98 98 A K H ><5S+ 0 0 120 -4,-2.7 3,-1.6 -5,-0.3 -3,-0.2 0.961 110.9 46.5 -53.1 -58.7 -5.6 -19.0 -29.1 99 99 A K H 3<5S+ 0 0 186 -4,-2.7 -1,-0.3 1,-0.3 -2,-0.2 0.778 108.9 59.0 -56.0 -26.6 -4.2 -19.8 -25.7 100 100 A L H 3<5S- 0 0 107 -4,-0.9 -1,-0.3 -5,-0.3 -2,-0.2 0.766 112.7-122.0 -74.4 -26.0 -7.7 -20.8 -24.7 101 101 A G T <<5 + 0 0 68 -3,-1.6 -3,-0.2 -4,-1.2 -2,-0.1 0.704 69.1 123.8 90.8 22.4 -7.8 -23.4 -27.4 102 102 A L < - 0 0 117 -5,-1.8 2,-0.3 1,-0.1 -1,-0.2 -0.356 64.9 -87.7-103.5-174.4 -10.8 -22.0 -29.2 103 103 A K + 0 0 190 -2,-0.1 2,-0.3 -3,-0.1 -1,-0.1 -0.756 50.5 153.6 -99.6 144.6 -11.5 -20.8 -32.8 104 104 A L 0 0 46 -2,-0.3 -10,-0.0 -7,-0.0 0, 0.0 -0.942 360.0 360.0-156.4 174.7 -10.8 -17.3 -34.0 105 105 A E 0 0 202 -2,-0.3 -11,-0.0 0, 0.0 0, 0.0 -0.492 360.0 360.0-155.2 360.0 -10.0 -15.2 -37.1