==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-NOV-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 19-JUL-12 2LW1 . COMPND 2 MOLECULE: ABC TRANSPORTER ATP-BINDING PROTEIN UUP; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR L.CARLIER,A.S.HAASE,M.Y.BURGOS ZEPEDA,E.DASSA,O.LEQUIN . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6582.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 74.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 54 63.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 551 A K 0 0 221 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 135.6 -38.1 17.9 0.0 2 552 A A + 0 0 101 1,-0.1 0, 0.0 3,-0.0 0, 0.0 0.872 360.0 110.6 61.1 40.5 -38.6 14.3 1.3 3 553 A E + 0 0 142 2,-0.0 -1,-0.1 0, 0.0 0, 0.0 0.044 49.9 132.3-119.3 19.7 -37.0 12.7 -1.8 4 554 A T - 0 0 99 1,-0.1 2,-0.9 2,-0.0 0, 0.0 -0.114 66.2-112.2 -70.7 165.3 -34.0 11.6 0.3 5 555 A V - 0 0 75 1,-0.1 2,-2.0 3,-0.1 -1,-0.1 -0.839 25.6-167.4-101.2 96.9 -32.4 8.2 0.4 6 556 A K S S- 0 0 173 -2,-0.9 4,-0.1 1,-0.2 -1,-0.1 -0.258 70.1 -70.2 -82.3 52.3 -33.2 6.9 3.9 7 557 A R S S+ 0 0 189 -2,-2.0 3,-0.2 2,-0.1 -1,-0.2 0.886 101.1 130.8 58.8 41.6 -30.7 4.1 3.5 8 558 A S S S+ 0 0 95 1,-0.2 2,-0.2 2,-0.1 3,-0.2 0.888 85.5 10.9 -83.7 -49.0 -32.9 2.4 1.0 9 559 A S S S+ 0 0 97 1,-0.1 -1,-0.2 2,-0.1 -2,-0.1 -0.624 102.9 96.0-129.0 72.4 -30.2 1.9 -1.6 10 560 A S + 0 0 34 -3,-0.2 3,-0.2 -2,-0.2 -1,-0.1 0.381 47.7 95.8-138.4 -2.7 -27.0 2.7 0.2 11 561 A K S S- 0 0 101 1,-0.3 2,-0.3 74,-0.2 73,-0.2 0.887 107.4 -18.6 -64.5 -39.1 -25.6 -0.7 1.4 12 562 A L - 0 0 51 70,-0.1 2,-0.3 71,-0.1 -1,-0.3 -0.958 59.6-154.5-157.8 155.3 -23.5 -0.8 -1.7 13 563 A S >> - 0 0 59 -2,-0.3 4,-2.1 -3,-0.2 3,-1.1 -0.838 38.5-105.8-120.4 165.4 -23.3 0.9 -5.1 14 564 A Y H 3> S+ 0 0 137 -2,-0.3 4,-2.7 1,-0.3 5,-0.3 0.884 122.9 59.4 -58.4 -37.4 -21.7 -0.6 -8.3 15 565 A K H 34 S+ 0 0 155 1,-0.2 4,-0.5 2,-0.2 -1,-0.3 0.786 109.8 43.0 -61.4 -26.8 -18.8 1.9 -7.8 16 566 A L H <> S+ 0 0 22 -3,-1.1 4,-3.6 2,-0.2 5,-0.3 0.749 106.9 62.0 -86.5 -29.3 -18.3 0.2 -4.4 17 567 A Q H X S+ 0 0 83 -4,-2.1 4,-1.7 1,-0.2 -2,-0.2 0.971 113.4 34.6 -55.7 -53.1 -18.8 -3.2 -6.0 18 568 A R H X S+ 0 0 114 -4,-2.7 4,-0.9 2,-0.2 -1,-0.2 0.718 117.0 57.3 -77.2 -20.7 -15.8 -2.6 -8.2 19 569 A E H > S+ 0 0 76 -4,-0.5 4,-1.9 -5,-0.3 3,-0.4 0.966 112.6 38.6 -67.2 -52.5 -14.1 -0.7 -5.3 20 570 A L H < S+ 0 0 18 -4,-3.6 -2,-0.2 1,-0.2 -3,-0.2 0.764 114.8 54.2 -72.7 -27.8 -14.4 -3.7 -3.0 21 571 A E H < S+ 0 0 104 -4,-1.7 4,-0.3 -5,-0.3 -1,-0.2 0.717 116.9 35.1 -83.3 -20.3 -13.6 -6.3 -5.6 22 572 A Q H X S+ 0 0 129 -4,-0.9 4,-1.7 -3,-0.4 3,-0.3 0.723 102.6 75.5 -99.4 -28.1 -10.3 -4.7 -6.7 23 573 A L H X S+ 0 0 6 -4,-1.9 4,-2.6 1,-0.2 -2,-0.1 0.846 88.7 56.5 -56.9 -44.8 -9.2 -3.4 -3.3 24 574 A P H > S+ 0 0 47 0, 0.0 4,-2.4 0, 0.0 5,-0.3 0.926 109.1 48.2 -53.6 -45.2 -8.1 -6.8 -1.9 25 575 A Q H > S+ 0 0 114 -3,-0.3 4,-1.6 -4,-0.3 -2,-0.2 0.875 111.8 50.6 -60.4 -38.1 -5.7 -7.1 -4.9 26 576 A L H X S+ 0 0 69 -4,-1.7 4,-3.0 2,-0.2 -1,-0.2 0.856 107.0 54.4 -69.3 -37.3 -4.6 -3.6 -4.1 27 577 A L H X S+ 0 0 7 -4,-2.6 4,-2.7 2,-0.2 5,-0.2 0.975 112.2 41.2 -59.7 -56.1 -4.0 -4.5 -0.5 28 578 A E H X S+ 0 0 115 -4,-2.4 4,-2.5 1,-0.2 -1,-0.2 0.813 114.0 57.3 -65.0 -26.5 -1.7 -7.4 -1.3 29 579 A D H X S+ 0 0 98 -4,-1.6 4,-2.0 -5,-0.3 -2,-0.2 0.975 111.9 38.8 -59.8 -56.7 -0.2 -5.1 -3.9 30 580 A L H X S+ 0 0 11 -4,-3.0 4,-2.9 2,-0.2 -2,-0.2 0.791 116.3 52.4 -69.1 -30.9 0.6 -2.4 -1.4 31 581 A E H X S+ 0 0 114 -4,-2.7 4,-3.1 2,-0.2 -1,-0.2 0.948 114.0 41.5 -69.2 -49.6 1.7 -5.0 1.2 32 582 A A H X S+ 0 0 59 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.809 114.8 55.3 -64.1 -29.6 4.0 -6.7 -1.3 33 583 A K H X S+ 0 0 53 -4,-2.0 4,-1.7 2,-0.2 -2,-0.2 0.948 110.0 43.0 -67.1 -50.8 5.0 -3.2 -2.4 34 584 A L H X S+ 0 0 37 -4,-2.9 4,-3.5 2,-0.2 3,-0.3 0.938 114.9 51.6 -59.1 -47.7 5.9 -2.2 1.2 35 585 A E H X S+ 0 0 129 -4,-3.1 4,-1.3 1,-0.2 -2,-0.2 0.910 110.3 48.8 -53.0 -45.8 7.6 -5.6 1.6 36 586 A A H < S+ 0 0 51 -4,-2.5 4,-0.4 1,-0.2 -1,-0.2 0.777 117.5 40.8 -69.3 -28.3 9.6 -5.0 -1.6 37 587 A L H >X S+ 0 0 21 -4,-1.7 4,-2.4 -3,-0.3 3,-0.7 0.862 109.5 56.7 -88.2 -38.8 10.6 -1.5 -0.5 38 588 A Q H 3X S+ 0 0 84 -4,-3.5 4,-0.7 1,-0.3 -2,-0.2 0.760 104.0 55.6 -65.2 -25.4 11.4 -2.3 3.1 39 589 A T H 3X S+ 0 0 77 -4,-1.3 4,-0.6 -5,-0.3 -1,-0.3 0.740 107.7 48.3 -81.5 -23.2 13.8 -5.0 2.0 40 590 A Q H X4 S+ 0 0 107 -3,-0.7 3,-1.0 -4,-0.4 6,-0.3 0.943 115.5 43.6 -72.6 -50.6 15.7 -2.4 -0.1 41 591 A V H 3< S+ 0 0 23 -4,-2.4 -2,-0.2 1,-0.3 -3,-0.2 0.646 101.6 72.5 -69.5 -16.4 15.8 -0.0 2.8 42 592 A A H 3< S+ 0 0 79 -4,-0.7 -1,-0.3 -5,-0.2 2,-0.2 0.878 86.0 75.6 -65.8 -37.8 16.7 -2.9 5.1 43 593 A D S XX S- 0 0 89 -3,-1.0 3,-1.4 -4,-0.6 4,-0.5 -0.549 76.9-141.1 -81.7 139.5 20.2 -3.1 3.6 44 594 A A T 34 S+ 0 0 77 1,-0.3 3,-0.3 -2,-0.2 -1,-0.1 0.701 101.7 69.1 -69.3 -20.0 22.7 -0.4 4.7 45 595 A S T >4 S+ 0 0 75 1,-0.2 3,-0.8 2,-0.2 -1,-0.3 0.629 85.4 72.0 -73.5 -13.6 23.9 -0.4 1.1 46 596 A F G X4 S+ 0 0 6 -3,-1.4 3,-2.0 -6,-0.3 -1,-0.2 0.963 94.7 49.0 -63.3 -51.3 20.6 1.2 0.2 47 597 A F G 3< S+ 0 0 119 -4,-0.5 -1,-0.2 1,-0.3 -2,-0.2 0.342 93.1 79.8 -74.6 8.7 21.6 4.5 1.8 48 598 A S G < S+ 0 0 97 -3,-0.8 -1,-0.3 2,-0.1 -2,-0.2 0.531 79.5 88.5 -88.7 -9.1 24.8 4.3 -0.1 49 599 A Q S < S- 0 0 87 -3,-2.0 5,-0.1 1,-0.1 -3,-0.0 -0.517 96.7 -82.8 -83.5 153.4 22.8 5.6 -3.1 50 600 A P >> - 0 0 74 0, 0.0 4,-2.4 0, 0.0 3,-1.9 -0.209 43.1-108.2 -52.0 148.2 22.4 9.3 -3.9 51 601 A H H 3> S+ 0 0 129 1,-0.3 4,-2.6 2,-0.2 5,-0.3 0.763 118.9 58.1 -51.7 -34.1 19.6 11.1 -2.0 52 602 A E H 34 S+ 0 0 138 2,-0.2 -1,-0.3 1,-0.2 4,-0.3 0.752 111.9 41.1 -74.3 -23.2 17.5 11.3 -5.1 53 603 A Q H <> S+ 0 0 100 -3,-1.9 4,-1.6 2,-0.1 -2,-0.2 0.887 120.2 42.2 -83.8 -47.2 17.5 7.5 -5.4 54 604 A T H X S+ 0 0 8 -4,-2.4 4,-3.7 2,-0.2 5,-0.2 0.931 113.5 48.8 -71.0 -48.9 17.1 6.7 -1.8 55 605 A Q H X S+ 0 0 80 -4,-2.6 4,-2.9 1,-0.2 5,-0.3 0.801 107.0 60.4 -63.4 -28.2 14.4 9.3 -0.9 56 606 A K H > S+ 0 0 131 -5,-0.3 4,-2.0 -4,-0.3 -1,-0.2 0.960 113.5 35.1 -57.7 -51.6 12.6 8.0 -4.0 57 607 A V H X S+ 0 0 22 -4,-1.6 4,-2.6 2,-0.2 -2,-0.2 0.907 118.6 51.8 -71.0 -43.4 12.5 4.5 -2.4 58 608 A L H X S+ 0 0 28 -4,-3.7 4,-2.6 2,-0.2 5,-0.2 0.934 114.1 42.9 -58.8 -49.0 12.0 5.9 1.1 59 609 A A H X S+ 0 0 59 -4,-2.9 4,-2.0 1,-0.2 -1,-0.2 0.904 115.5 49.0 -65.3 -42.0 9.1 8.1 0.1 60 610 A D H X S+ 0 0 49 -4,-2.0 4,-1.8 -5,-0.3 -1,-0.2 0.840 110.8 52.7 -66.2 -34.4 7.6 5.4 -2.0 61 611 A M H X S+ 0 0 20 -4,-2.6 4,-1.9 2,-0.2 -2,-0.2 0.955 111.2 44.1 -63.6 -52.0 8.1 3.0 1.0 62 612 A A H X S+ 0 0 44 -4,-2.6 4,-1.7 1,-0.2 -2,-0.2 0.807 113.1 53.1 -65.8 -29.7 6.3 5.3 3.4 63 613 A A H X S+ 0 0 54 -4,-2.0 4,-2.7 -5,-0.2 -1,-0.2 0.857 105.7 55.1 -71.1 -34.4 3.6 5.9 0.7 64 614 A A H X S+ 0 0 1 -4,-1.8 4,-2.6 2,-0.2 -2,-0.2 0.940 109.9 43.2 -65.2 -49.9 3.1 2.1 0.3 65 615 A E H X S+ 0 0 64 -4,-1.9 4,-2.5 2,-0.2 5,-0.3 0.931 116.4 48.0 -63.1 -44.7 2.4 1.5 4.0 66 616 A Q H X S+ 0 0 95 -4,-1.7 4,-2.1 1,-0.2 5,-0.3 0.932 113.6 46.8 -63.2 -45.2 0.1 4.5 4.3 67 617 A E H X S+ 0 0 112 -4,-2.7 4,-2.5 1,-0.2 -1,-0.2 0.918 112.6 52.7 -60.0 -43.6 -1.8 3.6 1.1 68 618 A L H X S+ 0 0 19 -4,-2.6 4,-2.2 -5,-0.2 -2,-0.2 0.956 112.3 40.1 -57.5 -58.2 -2.1 0.0 2.4 69 619 A E H X S+ 0 0 107 -4,-2.5 4,-2.3 1,-0.2 5,-0.2 0.882 117.0 49.4 -65.9 -39.9 -3.5 0.7 5.8 70 620 A Q H X S+ 0 0 104 -4,-2.1 4,-1.6 -5,-0.3 -1,-0.2 0.898 113.3 46.8 -64.5 -40.9 -5.9 3.4 4.6 71 621 A A H X S+ 0 0 11 -4,-2.5 4,-2.4 -5,-0.3 -2,-0.2 0.820 109.5 56.9 -69.5 -30.6 -7.1 1.2 1.8 72 622 A F H X S+ 0 0 70 -4,-2.2 4,-2.8 2,-0.2 -2,-0.2 0.942 109.6 41.5 -65.6 -49.6 -7.5 -1.6 4.3 73 623 A E H X S+ 0 0 111 -4,-2.3 4,-1.7 2,-0.2 -1,-0.2 0.778 113.5 54.9 -73.1 -24.9 -9.8 0.3 6.5 74 624 A R H X S+ 0 0 105 -4,-1.6 4,-2.6 -5,-0.2 -2,-0.2 0.918 110.1 48.1 -62.5 -44.5 -11.5 1.6 3.4 75 625 A W H X S+ 0 0 62 -4,-2.4 4,-2.8 2,-0.2 -2,-0.2 0.936 112.3 45.4 -62.1 -50.2 -11.9 -2.1 2.5 76 626 A E H X S+ 0 0 118 -4,-2.8 4,-3.1 2,-0.2 -1,-0.2 0.824 111.4 55.1 -66.6 -30.9 -13.3 -3.1 5.9 77 627 A Y H X S+ 0 0 107 -4,-1.7 4,-3.4 2,-0.2 -2,-0.2 0.945 109.9 45.3 -60.5 -48.6 -15.6 -0.0 5.7 78 628 A L H X S+ 0 0 0 -4,-2.6 4,-2.8 2,-0.2 -2,-0.2 0.888 114.1 49.7 -64.3 -39.4 -16.9 -1.3 2.4 79 629 A E H X S+ 0 0 54 -4,-2.8 4,-1.2 2,-0.2 -2,-0.2 0.943 114.4 43.9 -60.6 -49.9 -17.2 -4.8 3.9 80 630 A A H X S+ 0 0 61 -4,-3.1 4,-2.0 2,-0.2 3,-0.2 0.900 114.5 50.0 -62.6 -42.4 -19.1 -3.3 6.9 81 631 A L H < S+ 0 0 37 -4,-3.4 -2,-0.2 1,-0.2 -1,-0.2 0.923 106.9 54.3 -61.1 -45.9 -21.2 -1.1 4.6 82 632 A K H < S+ 0 0 66 -4,-2.8 -1,-0.2 1,-0.2 3,-0.2 0.778 114.9 41.6 -59.7 -28.2 -22.0 -4.1 2.4 83 633 A N H < S+ 0 0 123 -4,-1.2 2,-0.3 -3,-0.2 -1,-0.2 0.736 129.4 25.5 -90.0 -26.8 -23.2 -5.9 5.6 84 634 A G < 0 0 52 -4,-2.0 -1,-0.2 -73,-0.2 -2,-0.1 -0.697 360.0 360.0-145.3 88.8 -25.0 -2.9 7.1 85 635 A G 0 0 41 -2,-0.3 -74,-0.2 -3,-0.2 -3,-0.1 -0.603 360.0 360.0-147.6 360.0 -26.3 -0.1 4.8