==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 27-JUL-12 2LWD . COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX58; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.DUTTA,F.FERRAGE,A.AGGARWAL . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5345.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 73 76.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 54 56.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 1 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 95 A K 0 0 106 0, 0.0 70,-0.0 0, 0.0 94,-0.0 0.000 360.0 360.0 360.0 56.9 -10.4 13.7 -3.0 2 96 A K >> - 0 0 126 1,-0.1 4,-1.2 3,-0.1 3,-1.2 0.034 360.0 -73.6 -75.1-170.7 -8.8 16.2 -0.6 3 97 A I H 3> S+ 0 0 68 1,-0.3 4,-2.8 2,-0.2 5,-0.2 0.804 129.0 69.5 -59.6 -28.7 -7.0 15.4 2.7 4 98 A E H 3> S+ 0 0 127 1,-0.3 4,-1.4 2,-0.2 -1,-0.3 0.918 101.4 44.2 -53.0 -45.6 -10.5 14.7 4.1 5 99 A K H <> S+ 0 0 54 -3,-1.2 4,-3.2 2,-0.2 -1,-0.3 0.797 108.8 58.7 -72.6 -24.8 -10.7 11.6 2.0 6 100 A L H X S+ 0 0 1 -4,-1.2 4,-3.1 2,-0.2 -2,-0.2 0.915 100.3 55.9 -68.2 -43.3 -7.2 10.8 3.0 7 101 A E H X S+ 0 0 90 -4,-2.8 4,-2.3 2,-0.2 5,-0.2 0.908 111.7 44.5 -50.2 -45.4 -8.4 10.8 6.6 8 102 A E H X S+ 0 0 74 -4,-1.4 4,-3.6 2,-0.2 5,-0.3 0.971 110.7 51.2 -65.2 -57.3 -10.9 8.2 5.5 9 103 A Y H X S+ 0 0 0 -4,-3.2 4,-2.5 2,-0.2 -2,-0.2 0.850 111.5 52.4 -46.0 -39.6 -8.3 6.2 3.4 10 104 A R H X S+ 0 0 88 -4,-3.1 4,-2.0 2,-0.2 -2,-0.2 0.988 115.6 36.2 -60.3 -62.7 -6.1 6.2 6.6 11 105 A L H X S+ 0 0 66 -4,-2.3 4,-1.5 1,-0.2 -2,-0.2 0.868 117.2 55.1 -58.9 -38.9 -8.7 4.9 8.9 12 106 A L H X S+ 0 0 30 -4,-3.6 4,-3.2 2,-0.2 -1,-0.2 0.878 105.2 51.3 -64.2 -42.9 -10.0 2.7 6.2 13 107 A L H < S+ 0 0 0 -4,-2.5 -1,-0.2 -5,-0.3 -2,-0.2 0.878 109.5 51.5 -58.8 -39.1 -6.6 1.2 5.7 14 108 A K H >< S+ 0 0 99 -4,-2.0 3,-0.6 1,-0.2 -2,-0.2 0.795 112.1 48.4 -66.7 -29.8 -6.6 0.6 9.4 15 109 A R H 3< S+ 0 0 171 -4,-1.5 2,-0.5 1,-0.2 -2,-0.2 0.964 111.3 46.2 -73.3 -56.6 -10.0 -1.1 8.9 16 110 A L T 3X S+ 0 0 34 -4,-3.2 4,-2.4 1,-0.2 -1,-0.2 -0.055 73.1 121.8 -82.0 33.7 -9.0 -3.3 6.0 17 111 A Q H <> S+ 0 0 77 -3,-0.6 4,-2.7 -2,-0.5 -1,-0.2 0.917 78.7 46.7 -61.7 -44.1 -5.8 -4.4 7.7 18 112 A P H > S+ 0 0 69 0, 0.0 4,-1.9 0, 0.0 5,-0.3 0.984 114.5 45.4 -55.7 -58.1 -7.1 -8.1 7.4 19 113 A E H > S+ 0 0 65 -4,-0.2 4,-1.3 1,-0.2 5,-0.4 0.847 115.4 52.9 -54.2 -34.6 -8.0 -7.6 3.8 20 114 A F H >X S+ 0 0 0 -4,-2.4 4,-2.7 -7,-0.2 3,-0.6 0.998 107.9 43.2 -65.5 -66.7 -4.7 -5.9 3.4 21 115 A K H 3< S+ 0 0 53 -4,-2.7 37,-0.2 1,-0.3 -2,-0.2 0.848 120.4 41.3 -53.3 -41.1 -2.2 -8.4 4.8 22 116 A T H 3< S+ 0 0 59 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.737 125.2 33.0 -87.5 -23.5 -3.8 -11.5 3.1 23 117 A R H << S+ 0 0 76 -4,-1.3 64,-0.3 -3,-0.6 -2,-0.2 0.880 100.7 87.2 -90.0 -51.8 -4.6 -9.9 -0.3 24 118 A I < - 0 0 0 -4,-2.7 34,-0.3 -5,-0.4 35,-0.1 -0.199 51.5-168.4 -54.6 131.2 -1.6 -7.5 -0.7 25 119 A I >> - 0 0 55 32,-0.1 3,-3.2 33,-0.1 4,-1.4 -0.844 10.0-161.4-117.8 89.3 1.6 -8.7 -2.1 26 120 A P T 34 S+ 0 0 0 0, 0.0 23,-0.2 0, 0.0 -2,-0.1 0.117 84.5 67.5 -65.4 24.8 3.9 -5.7 -1.3 27 121 A T T 34 S+ 0 0 69 -2,-1.2 19,-0.1 22,-0.1 -3,-0.0 0.471 114.1 27.5-108.5 -15.3 6.4 -6.8 -3.9 28 122 A D T X4 S+ 0 0 74 -3,-3.2 3,-2.3 2,-0.1 4,-0.4 0.809 121.9 46.1-108.0 -59.2 4.0 -6.0 -6.6 29 123 A I T >X S+ 0 0 0 -4,-1.4 4,-1.4 1,-0.3 3,-0.6 0.759 102.2 72.6 -59.9 -22.3 1.7 -3.3 -5.3 30 124 A I H 3> S+ 0 0 9 -5,-0.4 4,-1.3 1,-0.2 -1,-0.3 0.757 77.6 79.1 -63.2 -24.7 4.9 -1.6 -4.2 31 125 A S H <4 S+ 0 0 85 -3,-2.3 3,-0.3 1,-0.2 -1,-0.2 0.911 108.4 23.4 -54.7 -51.1 5.7 -0.8 -7.8 32 126 A D H X4 S+ 0 0 47 -3,-0.6 3,-2.0 -4,-0.4 4,-0.4 0.706 106.9 80.5 -88.4 -20.8 3.4 2.2 -7.9 33 127 A L H 3X S+ 0 0 0 -4,-1.4 4,-2.4 1,-0.3 3,-0.4 0.794 76.2 75.9 -55.6 -27.0 3.5 2.7 -4.1 34 128 A S T 3< S+ 0 0 58 -4,-1.3 -1,-0.3 -3,-0.3 5,-0.1 0.413 83.7 70.9 -65.8 4.8 6.8 4.5 -4.7 35 129 A E T <4 S+ 0 0 105 -3,-2.0 -1,-0.2 3,-0.1 -2,-0.2 0.925 116.7 13.3 -85.3 -57.5 4.7 7.4 -6.0 36 130 A C T 4 S+ 0 0 9 -3,-0.4 2,-0.2 -4,-0.4 -2,-0.2 0.928 124.8 65.5 -78.3 -51.5 3.2 8.5 -2.7 37 131 A L S < S- 0 0 2 -4,-2.4 2,-0.1 -5,-0.1 28,-0.1 -0.497 82.9-126.3 -81.9 137.5 5.6 6.5 -0.4 38 132 A I >> - 0 0 101 -2,-0.2 4,-2.8 1,-0.1 3,-0.6 -0.381 31.8-101.8 -75.5 160.2 9.2 7.3 -0.3 39 133 A N H 3>>S+ 0 0 105 1,-0.2 4,-3.3 2,-0.2 5,-0.6 0.912 119.5 59.7 -51.4 -50.2 11.8 4.5 -0.9 40 134 A Q H 345S+ 0 0 131 1,-0.2 4,-0.4 2,-0.2 -1,-0.2 0.877 115.4 36.5 -48.8 -43.0 12.6 4.0 2.8 41 135 A E H X>5S+ 0 0 47 -3,-0.6 4,-2.3 2,-0.2 3,-0.6 0.972 120.9 45.3 -71.5 -55.3 8.9 3.2 3.4 42 136 A C H 3X5S+ 0 0 2 -4,-2.8 4,-2.1 1,-0.3 -2,-0.2 0.931 118.7 40.8 -55.4 -53.4 8.3 1.3 0.1 43 137 A E H 3X5S+ 0 0 96 -4,-3.3 4,-1.2 2,-0.2 -1,-0.3 0.569 109.3 62.5 -78.6 -7.5 11.5 -0.8 0.2 44 138 A E H <>X S+ 0 0 99 -4,-1.2 4,-2.4 2,-0.2 3,-0.6 0.969 108.2 44.4 -60.3 -53.0 12.2 -5.8 3.1 48 142 A I H 3X>S+ 0 0 26 -4,-2.5 4,-3.1 1,-0.3 5,-2.0 0.903 110.3 57.2 -57.7 -42.8 9.5 -7.3 5.3 49 143 A C H 3<5S+ 0 0 9 -4,-2.7 -1,-0.3 3,-0.2 -2,-0.2 0.870 115.7 36.5 -47.7 -41.2 8.3 -9.0 2.2 50 144 A S H <<5S+ 0 0 99 -4,-1.7 -2,-0.2 -3,-0.6 -1,-0.2 0.736 126.5 36.0 -89.8 -24.1 11.7 -10.5 1.8 51 145 A T H <5S+ 0 0 85 -4,-2.4 -3,-0.2 2,-0.2 -2,-0.2 0.797 139.6 9.5-102.0 -37.6 12.5 -11.1 5.5 52 146 A K T <5S- 0 0 156 -4,-3.1 2,-0.3 -5,-0.3 -3,-0.2 0.778 110.7 -95.6-100.2 -73.6 9.1 -12.1 6.8 53 147 A G >< - 0 0 22 -5,-2.0 4,-1.9 1,-0.1 -1,-0.3 -0.954 38.6 -70.1 165.8-178.0 6.8 -12.5 3.8 54 148 A M H > S+ 0 0 63 -2,-0.3 4,-2.5 2,-0.2 5,-0.2 0.955 126.5 46.1 -66.9 -50.8 4.2 -10.8 1.6 55 149 A M H > S+ 0 0 92 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.887 113.0 49.6 -61.2 -43.2 1.5 -10.6 4.2 56 150 A A H > S+ 0 0 26 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.887 112.1 49.7 -62.2 -39.7 3.8 -9.4 6.9 57 151 A G H >X S+ 0 0 0 -4,-1.9 4,-3.1 -9,-0.2 3,-1.0 0.878 105.0 57.0 -66.0 -38.4 5.0 -6.8 4.5 58 152 A A H 3X S+ 0 0 0 -4,-2.5 4,-2.9 1,-0.3 -1,-0.2 0.878 103.7 54.0 -58.9 -38.3 1.5 -5.8 3.7 59 153 A E H 3< S+ 0 0 77 -4,-1.7 4,-0.4 2,-0.2 -1,-0.3 0.628 111.4 45.2 -73.1 -16.8 1.0 -5.1 7.4 60 154 A K H S+ 0 0 94 -4,-0.4 4,-1.0 2,-0.2 -1,-0.2 0.861 110.4 53.8 -76.7 -37.0 1.3 1.4 8.3 64 158 A C H X S+ 0 0 2 -4,-2.5 4,-0.6 2,-0.2 -2,-0.2 0.845 109.2 48.3 -66.7 -35.7 3.7 3.2 5.9 65 159 A L H < S+ 0 0 0 -4,-2.8 -1,-0.2 2,-0.3 -2,-0.2 0.795 109.5 52.3 -73.6 -27.9 0.8 4.6 4.0 66 160 A L H < S+ 0 0 38 -4,-1.0 -2,-0.2 -5,-0.4 -1,-0.2 0.733 107.5 53.9 -69.8 -25.0 -0.6 5.6 7.3 67 161 A R H < S+ 0 0 201 -4,-1.0 -2,-0.3 -5,-0.1 -1,-0.2 0.673 100.9 78.3 -78.4 -22.2 2.9 7.2 7.6 68 162 A S < - 0 0 23 -4,-0.6 -31,-0.1 1,-0.1 -32,-0.0 -0.548 53.8-173.0 -89.9 155.8 2.3 9.0 4.3 69 163 A D + 0 0 107 -2,-0.2 2,-0.6 -33,-0.2 -1,-0.1 0.371 50.8 114.5-124.2 -5.6 0.2 12.1 3.9 70 164 A K > - 0 0 82 1,-0.2 3,-2.4 -34,-0.1 -2,-0.1 -0.625 68.6-135.0 -76.0 113.5 0.3 12.3 0.1 71 165 A E T 3> S+ 0 0 65 -2,-0.6 4,-0.7 1,-0.3 -1,-0.2 0.611 96.6 73.4 -39.5 -24.6 -3.2 11.7 -1.2 72 166 A N H 3> S+ 0 0 62 1,-0.2 4,-3.9 2,-0.1 5,-0.4 0.854 72.4 81.8 -65.1 -33.9 -1.8 9.3 -3.8 73 167 A W H <> S+ 0 0 1 -3,-2.4 4,-1.9 1,-0.2 -1,-0.2 0.761 96.7 39.6 -52.7 -38.0 -1.1 6.4 -1.5 74 168 A P H > S+ 0 0 0 0, 0.0 4,-2.5 0, 0.0 -1,-0.2 0.913 122.0 43.4 -74.8 -40.9 -4.7 5.0 -1.4 75 169 A K H X S+ 0 0 34 -4,-0.7 4,-2.0 -3,-0.3 -2,-0.2 0.909 117.6 45.8 -65.9 -44.2 -5.2 5.6 -5.1 76 170 A T H X S+ 0 0 4 -4,-3.9 4,-3.3 2,-0.2 5,-0.3 0.840 109.7 56.8 -67.0 -39.0 -1.7 4.3 -5.8 77 171 A L H X S+ 0 0 0 -4,-1.9 4,-1.9 -5,-0.4 -2,-0.2 0.989 114.9 35.5 -51.9 -62.9 -2.4 1.4 -3.5 78 172 A K H X S+ 0 0 40 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.760 118.4 54.3 -68.5 -27.3 -5.5 0.3 -5.5 79 173 A L H X S+ 0 0 46 -4,-2.0 4,-2.2 2,-0.2 -1,-0.2 0.952 108.0 46.2 -70.1 -54.1 -3.9 1.4 -8.8 80 174 A A H X S+ 0 0 1 -4,-3.3 4,-1.5 1,-0.2 -2,-0.2 0.880 117.1 48.3 -53.8 -36.9 -0.8 -0.7 -8.3 81 175 A L H X>S+ 0 0 0 -4,-1.9 5,-2.4 -5,-0.3 4,-0.9 0.858 104.7 56.1 -72.4 -40.8 -3.2 -3.4 -7.3 82 176 A E H <5S+ 0 0 95 -4,-2.2 -2,-0.2 3,-0.2 -1,-0.2 0.861 106.8 53.8 -60.8 -34.5 -5.4 -2.9 -10.3 83 177 A K H <5S+ 0 0 86 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.929 116.6 35.0 -60.9 -48.7 -2.3 -3.4 -12.4 84 178 A E H <5S- 0 0 41 -4,-1.5 -1,-0.2 -5,-0.2 -2,-0.2 0.458 108.1-125.7 -87.8 -1.0 -1.5 -6.7 -10.7 85 179 A R T <5 - 0 0 210 -4,-0.9 -3,-0.2 1,-0.2 -4,-0.1 0.841 44.3-177.9 55.4 36.7 -5.3 -7.5 -10.5 86 180 A N < - 0 0 10 -5,-2.4 3,-0.5 1,-0.1 4,-0.5 -0.320 35.4-125.7 -63.9 147.1 -4.7 -8.0 -6.8 87 181 A K S > S+ 0 0 128 -64,-0.3 4,-0.6 1,-0.2 3,-0.4 0.689 105.8 66.3 -70.5 -18.8 -7.7 -9.1 -4.7 88 182 A F H >> S+ 0 0 0 1,-0.2 4,-3.0 2,-0.2 3,-1.6 0.898 87.1 67.9 -70.0 -40.2 -7.2 -6.2 -2.3 89 183 A S H 34 S+ 0 0 3 -3,-0.5 -1,-0.2 1,-0.3 -2,-0.2 0.831 97.2 54.6 -45.3 -37.4 -8.0 -3.6 -5.0 90 184 A E H 34 S+ 0 0 127 -4,-0.5 -1,-0.3 -3,-0.4 -2,-0.2 0.805 115.8 37.1 -70.7 -28.3 -11.6 -4.9 -5.0 91 185 A L H << S+ 0 0 38 -3,-1.6 -2,-0.2 -4,-0.6 -1,-0.2 0.822 96.1 92.7 -92.2 -37.3 -12.0 -4.3 -1.3 92 186 A W < - 0 0 2 -4,-3.0 2,-0.8 1,-0.1 -79,-0.0 -0.408 69.8-141.7 -67.2 128.3 -10.0 -1.1 -1.0 93 187 A I + 0 0 84 -2,-0.2 2,-0.4 -84,-0.1 -1,-0.1 -0.818 33.2 155.1-101.4 103.4 -12.1 2.0 -1.2 94 188 A V - 0 0 18 -2,-0.8 2,-0.7 -19,-0.1 -89,-0.0 -0.967 40.4-129.3-119.7 143.5 -10.6 4.9 -3.1 95 189 A E 0 0 64 -2,-0.4 -20,-0.1 1,-0.2 -2,-0.0 -0.838 360.0 360.0 -90.3 115.2 -12.5 7.7 -4.9 96 190 A K 0 0 157 -2,-0.7 -1,-0.2 -21,-0.0 -21,-0.0 0.652 360.0 360.0-126.4 360.0 -11.1 7.9 -8.4