==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 27-JUL-12 2LWE . COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX58; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.DUTTA,F.FERRAGE,A.AGGARWAL . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5615.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 71.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 53 55.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 1 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 95 A K 0 0 183 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 54.5 -18.6 13.0 -0.2 2 96 A K > + 0 0 170 3,-0.1 4,-0.6 4,-0.0 3,-0.4 0.809 360.0 1.9 -94.8 -81.8 -15.8 15.0 -1.9 3 97 A I H >> S+ 0 0 114 1,-0.2 4,-2.7 2,-0.2 3,-0.8 0.833 126.6 69.9 -74.2 -31.5 -12.8 14.9 0.4 4 98 A E H 3> S+ 0 0 108 1,-0.3 4,-1.4 2,-0.2 -1,-0.2 0.805 95.0 57.0 -52.3 -30.0 -14.8 12.8 2.8 5 99 A K H 3> S+ 0 0 62 -3,-0.4 4,-1.1 2,-0.2 -1,-0.3 0.857 109.0 42.1 -72.1 -38.2 -14.4 10.1 0.2 6 100 A L H < S+ 0 0 123 -4,-1.3 3,-0.7 2,-0.1 -1,-0.3 0.798 113.8 55.3 -71.4 -32.6 -6.8 0.9 8.2 15 109 A R H 3< S+ 0 0 176 -4,-1.6 -2,-0.2 1,-0.2 4,-0.2 0.975 112.6 35.9 -72.0 -55.2 -10.0 -1.1 7.5 16 110 A L T 3X S+ 0 0 19 -4,-3.0 4,-1.9 1,-0.2 -1,-0.2 -0.005 80.4 125.5 -91.3 33.4 -8.7 -3.6 5.0 17 111 A Q H <> S+ 0 0 49 -3,-0.7 4,-3.1 2,-0.2 -1,-0.2 0.914 74.4 46.2 -50.9 -48.9 -5.4 -3.8 6.9 18 112 A P H > S+ 0 0 68 0, 0.0 4,-1.6 0, 0.0 5,-0.2 0.908 112.8 48.5 -66.6 -40.5 -5.8 -7.7 7.3 19 113 A E H > S+ 0 0 58 2,-0.2 4,-1.7 1,-0.2 5,-0.3 0.786 114.8 48.6 -69.5 -26.2 -6.7 -8.2 3.7 20 114 A F H X S+ 0 0 1 -4,-1.9 4,-2.3 2,-0.2 -1,-0.2 0.954 109.0 49.4 -73.4 -52.3 -3.7 -6.0 2.9 21 115 A K H < S+ 0 0 62 -4,-3.1 37,-0.2 1,-0.2 -2,-0.2 0.786 119.2 40.3 -61.0 -26.2 -1.3 -7.8 5.1 22 116 A T H < S+ 0 0 80 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.923 125.9 26.0 -90.8 -50.1 -2.3 -11.1 3.7 23 117 A R H < S+ 0 0 84 -4,-1.7 2,-0.5 -5,-0.2 -3,-0.2 0.685 98.8 98.3 -92.8 -21.7 -2.8 -10.6 -0.1 24 118 A I < - 0 0 1 -4,-2.3 34,-0.2 -5,-0.3 -4,-0.0 -0.571 56.1-157.4 -79.5 122.9 -0.4 -7.7 -0.6 25 119 A I >> - 0 0 48 -2,-0.5 3,-2.4 1,-0.1 4,-1.9 -0.898 9.0-156.5 -89.5 108.7 3.0 -8.3 -1.9 26 120 A P T 34 S+ 0 0 0 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.503 92.0 62.2 -68.3 -4.8 4.8 -5.1 -0.7 27 121 A T T 34 S+ 0 0 51 3,-0.1 4,-0.1 2,-0.1 19,-0.1 0.567 112.8 35.3 -90.8 -14.0 7.3 -5.6 -3.4 28 122 A D T X> S+ 0 0 48 -3,-2.4 3,-2.4 2,-0.1 4,-0.6 0.861 115.7 44.6-103.6 -59.3 4.6 -5.2 -6.0 29 123 A I H 3X S+ 0 0 0 -4,-1.9 4,-3.1 1,-0.3 3,-0.5 0.773 103.1 71.5 -62.2 -21.6 2.0 -2.6 -4.9 30 124 A I H 3> S+ 0 0 10 -5,-0.4 4,-3.6 1,-0.2 -1,-0.3 0.775 87.9 63.3 -61.0 -27.7 4.9 -0.5 -3.9 31 125 A S H <4 S+ 0 0 67 -3,-2.4 -1,-0.2 2,-0.2 4,-0.2 0.897 113.0 32.5 -66.6 -40.4 5.6 0.1 -7.6 32 126 A D H >< S+ 0 0 12 -4,-0.6 3,-0.9 -3,-0.5 -2,-0.2 0.881 123.2 48.6 -81.4 -40.4 2.3 1.8 -8.1 33 127 A L H >X S+ 0 0 1 -4,-3.1 3,-3.3 43,-0.2 4,-2.4 0.883 97.5 67.8 -66.7 -42.6 2.4 3.3 -4.6 34 128 A S T 3< S+ 0 0 46 -4,-3.6 -1,-0.2 1,-0.3 -2,-0.1 0.680 85.1 73.5 -55.9 -17.1 6.0 4.6 -4.8 35 129 A E T <4 S+ 0 0 142 -3,-0.9 -1,-0.3 -4,-0.2 -2,-0.2 0.755 116.2 21.1 -66.4 -22.0 4.6 7.0 -7.4 36 130 A C T <4 S+ 0 0 14 -3,-3.3 -2,-0.3 -4,-0.2 33,-0.2 0.624 119.4 76.5-110.7 -27.2 3.1 8.8 -4.4 37 131 A L S < S- 0 0 11 -4,-2.4 2,-0.3 -7,-0.2 28,-0.1 -0.385 80.0-108.3 -92.6 164.5 5.3 7.4 -1.6 38 132 A I >> - 0 0 86 26,-0.1 4,-2.0 -2,-0.1 3,-0.6 -0.742 19.3-126.8 -98.9 141.0 8.8 8.2 -0.6 39 133 A N H 3> S+ 0 0 107 -2,-0.3 4,-3.3 1,-0.2 5,-0.3 0.746 98.7 71.7 -52.1 -34.5 11.8 5.9 -1.1 40 134 A Q H 3> S+ 0 0 154 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.943 113.0 24.1 -55.8 -56.3 12.9 5.9 2.5 41 135 A E H <> S+ 0 0 33 -3,-0.6 4,-3.4 2,-0.2 5,-0.2 0.824 118.5 64.0 -77.6 -31.4 10.1 3.8 3.8 42 136 A C H X S+ 0 0 9 -4,-2.0 4,-1.6 1,-0.2 -2,-0.2 0.920 108.5 40.9 -55.3 -44.9 9.6 2.2 0.3 43 137 A E H X S+ 0 0 129 -4,-3.3 4,-1.2 2,-0.2 -1,-0.2 0.832 113.6 54.0 -74.7 -32.7 13.1 0.7 0.5 44 138 A E H >X S+ 0 0 78 -4,-1.3 4,-1.7 -5,-0.3 3,-0.7 0.958 108.2 49.3 -63.9 -49.8 12.6 -0.2 4.2 45 139 A I H 3X S+ 0 0 0 -4,-3.4 4,-2.0 1,-0.3 -2,-0.2 0.886 107.7 54.9 -54.6 -41.2 9.4 -2.1 3.4 46 140 A L H 3< S+ 0 0 63 -4,-1.6 4,-0.4 -5,-0.2 -1,-0.3 0.808 107.1 51.6 -64.9 -28.8 11.3 -3.9 0.6 47 141 A Q H S+ 0 0 21 -4,-1.7 5,-3.2 2,-0.3 4,-2.1 0.778 95.7 67.7 -84.2 -25.0 11.2 -6.3 5.6 49 143 A C H <5S+ 0 0 16 -4,-2.0 5,-0.4 3,-0.2 -1,-0.2 0.816 115.5 35.0 -55.7 -26.8 9.4 -8.3 2.8 50 144 A S H 45S+ 0 0 89 -4,-0.4 -2,-0.3 -3,-0.4 -1,-0.2 0.926 125.2 35.9 -87.8 -62.5 12.7 -10.1 3.2 51 145 A T H <5S+ 0 0 89 -4,-2.8 -3,-0.2 1,-0.2 -2,-0.2 0.881 138.9 14.4 -66.0 -43.0 13.6 -10.0 6.8 52 146 A K T <5S- 0 0 161 -4,-2.1 -3,-0.2 1,-0.2 2,-0.2 0.736 115.7 -96.8-105.3 -34.0 10.1 -10.2 8.3 53 147 A G >< - 0 0 22 -5,-3.2 4,-2.7 1,-0.1 -1,-0.2 -0.453 37.6 -76.2 125.5 157.0 8.1 -11.4 5.3 54 148 A M H > S+ 0 0 67 -5,-0.4 4,-2.7 1,-0.2 5,-0.2 0.901 129.2 54.8 -51.6 -46.2 5.9 -10.0 2.7 55 149 A M H > S+ 0 0 90 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.913 110.1 44.5 -55.1 -47.6 3.1 -9.6 5.2 56 150 A A H > S+ 0 0 21 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.881 112.9 51.7 -68.7 -37.4 5.3 -7.6 7.6 57 151 A G H X S+ 0 0 0 -4,-2.7 4,-1.5 -9,-0.3 -1,-0.2 0.885 111.6 47.9 -62.2 -37.8 6.6 -5.5 4.7 58 152 A A H X S+ 0 0 0 -4,-2.7 4,-2.0 -5,-0.2 -2,-0.2 0.886 108.5 53.5 -69.1 -40.2 2.9 -4.9 3.8 59 153 A E H X S+ 0 0 74 -4,-2.6 4,-1.5 1,-0.2 -2,-0.2 0.906 112.4 45.0 -59.7 -40.9 2.1 -4.0 7.3 60 154 A K H X S+ 0 0 37 -4,-2.3 4,-1.1 1,-0.2 -1,-0.2 0.801 110.1 55.8 -69.6 -31.1 5.0 -1.5 7.1 61 155 A L H X S+ 0 0 0 -4,-1.5 4,-2.1 2,-0.2 -2,-0.2 0.825 103.7 54.3 -76.2 -28.5 3.8 -0.3 3.8 62 156 A V H X S+ 0 0 7 -4,-2.0 4,-2.3 2,-0.2 -2,-0.2 0.953 106.8 49.0 -67.0 -52.3 0.3 0.4 5.1 63 157 A E H < S+ 0 0 71 -4,-1.5 4,-0.3 1,-0.2 -1,-0.2 0.797 113.3 49.8 -59.7 -29.2 1.5 2.7 7.9 64 158 A C H >X S+ 0 0 1 -4,-1.1 3,-1.2 2,-0.2 4,-0.6 0.871 105.0 55.2 -78.7 -40.1 3.6 4.5 5.3 65 159 A L H >< S+ 0 0 0 -4,-2.1 3,-1.8 1,-0.3 -2,-0.2 0.924 102.3 58.9 -55.1 -45.3 0.7 4.9 2.8 66 160 A L T 3< S+ 0 0 37 -4,-2.3 -1,-0.3 1,-0.3 -2,-0.2 0.692 100.2 57.7 -57.7 -20.9 -1.2 6.6 5.6 67 161 A R T <4 S+ 0 0 132 -3,-1.2 -1,-0.3 -4,-0.3 2,-0.3 0.655 90.5 87.8 -86.2 -16.7 1.6 9.2 5.8 68 162 A S << - 0 0 11 -3,-1.8 -31,-0.1 -4,-0.6 -32,-0.0 -0.597 58.2-163.7 -85.6 142.9 1.2 10.1 2.1 69 163 A D + 0 0 119 -2,-0.3 2,-0.1 -33,-0.2 -1,-0.1 -0.215 45.3 125.1-121.7 42.4 -1.2 12.9 1.2 70 164 A K - 0 0 106 1,-0.1 -34,-0.1 -34,-0.0 -2,-0.0 -0.354 63.1-132.3 -80.3 169.4 -1.5 12.2 -2.5 71 165 A E S S+ 0 0 140 -2,-0.1 4,-0.3 2,-0.1 -1,-0.1 0.801 105.8 50.1 -82.3 -38.1 -4.8 11.6 -4.3 72 166 A N S >> S+ 0 0 70 1,-0.2 4,-2.4 2,-0.1 3,-1.9 0.756 82.9 88.2 -75.9 -26.7 -3.4 8.6 -6.0 73 167 A W H 3> S+ 0 0 0 1,-0.3 4,-1.0 2,-0.2 -1,-0.2 0.832 94.1 41.0 -50.5 -46.9 -1.8 6.6 -3.1 74 168 A P H 3> S+ 0 0 0 0, 0.0 4,-0.8 0, 0.0 -1,-0.3 0.701 116.9 51.5 -75.4 -14.6 -5.0 4.6 -2.1 75 169 A K H <> S+ 0 0 39 -3,-1.9 4,-3.2 -4,-0.3 5,-0.3 0.783 96.8 65.7 -85.6 -31.2 -5.7 4.2 -5.8 76 170 A E H X S+ 0 0 5 -4,-2.4 4,-1.8 1,-0.2 -43,-0.2 0.816 97.5 61.9 -56.2 -32.0 -2.1 2.9 -6.4 77 171 A L H X S+ 0 0 1 -4,-1.0 4,-1.8 -5,-0.3 3,-0.4 0.991 110.1 32.3 -54.3 -67.6 -3.4 0.1 -4.2 78 172 A K H X S+ 0 0 42 -4,-0.8 4,-1.0 1,-0.3 -2,-0.2 0.887 119.3 56.2 -63.1 -36.8 -6.2 -1.1 -6.5 79 173 A L H X S+ 0 0 47 -4,-3.2 4,-1.5 1,-0.2 -1,-0.3 0.827 104.4 53.7 -61.4 -34.3 -4.0 -0.1 -9.5 80 174 A A H X S+ 0 0 0 -4,-1.8 4,-2.8 -3,-0.4 5,-0.3 0.965 110.3 43.6 -67.8 -51.1 -1.2 -2.3 -8.3 81 175 A L H <>S+ 0 0 0 -4,-1.8 5,-2.7 1,-0.2 4,-0.4 0.565 110.4 56.5 -75.8 -9.9 -3.2 -5.5 -8.0 82 176 A E H <5S+ 0 0 75 -4,-1.0 -1,-0.2 3,-0.2 -2,-0.2 0.805 111.5 44.6 -80.3 -33.7 -4.9 -4.8 -11.3 83 177 A K H <5S+ 0 0 112 -4,-1.5 -2,-0.2 -3,-0.2 -3,-0.2 0.894 123.0 34.2 -75.7 -43.9 -1.5 -4.7 -12.8 84 178 A E T <5S- 0 0 66 -4,-2.8 -3,-0.2 -5,-0.1 -1,-0.2 0.757 109.7-130.4 -76.3 -25.2 -0.3 -7.8 -10.9 85 179 A R T 5 + 0 0 206 -4,-0.4 -3,-0.2 -5,-0.3 2,-0.2 0.948 48.3 161.0 70.7 55.3 -3.9 -9.1 -11.3 86 180 A N > < - 0 0 45 -5,-2.7 3,-1.1 1,-0.1 4,-0.2 -0.652 52.9-113.0-105.9 161.3 -4.3 -10.0 -7.6 87 181 A K T >> S+ 0 0 115 1,-0.2 3,-2.5 -2,-0.2 4,-0.6 0.882 105.9 73.8 -58.2 -40.7 -7.5 -10.7 -5.6 88 182 A F H 3> S+ 0 0 0 1,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.709 80.1 74.0 -52.8 -25.5 -7.1 -7.6 -3.4 89 183 A S H <4 S+ 0 0 16 -3,-1.1 -1,-0.3 -8,-0.2 -2,-0.1 0.819 96.7 49.5 -58.6 -29.7 -8.1 -5.3 -6.3 90 184 A E H <4 S+ 0 0 130 -3,-2.5 -1,-0.2 -4,-0.2 -2,-0.2 0.912 112.1 41.1 -79.9 -45.1 -11.7 -6.3 -5.9 91 185 A L H < S+ 0 0 32 -4,-0.6 2,-0.4 2,-0.1 -2,-0.2 0.741 92.2 94.4 -81.7 -26.2 -12.3 -5.9 -2.2 92 186 A W < - 0 0 3 -4,-1.8 2,-1.1 1,-0.1 -79,-0.0 -0.565 70.0-147.7 -66.2 123.3 -10.4 -2.6 -2.0 93 187 A I + 0 0 95 -2,-0.4 2,-0.2 -84,-0.1 -1,-0.1 -0.603 46.6 127.0-101.4 75.1 -13.0 0.2 -2.3 94 188 A V - 0 0 13 -2,-1.1 -19,-0.1 1,-0.2 -88,-0.0 -0.537 66.8 -50.6-114.6-178.5 -11.1 3.0 -4.1 95 189 A E 0 0 81 -2,-0.2 -1,-0.2 1,-0.1 -17,-0.1 -0.155 360.0 360.0 -52.1 149.0 -11.8 5.1 -7.2 96 190 A K 0 0 199 -3,-0.1 -1,-0.1 -18,-0.0 -2,-0.1 0.983 360.0 360.0 56.8 360.0 -12.7 3.2 -10.5