==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-JAN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 19-AUG-12 2LXA . COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN MDY2; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR J.W.CHARTRON,D.G.VANDERVELDE,W.M.CLEMONS JR. . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5839.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 72.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 19.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 19 21.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 73 A M 0 0 202 0, 0.0 2,-1.7 0, 0.0 20,-0.1 0.000 360.0 360.0 360.0 -60.5 16.6 -1.7 -7.0 2 74 A V + 0 0 13 18,-0.3 18,-1.2 64,-0.1 2,-0.5 -0.566 360.0 175.6 -77.3 88.1 13.8 -0.8 -4.6 3 75 A H E -A 19 0A 38 -2,-1.7 2,-0.5 62,-0.9 16,-0.2 -0.857 9.8-175.1-104.6 124.7 11.3 -3.4 -5.7 4 76 A L E -A 18 0A 0 14,-1.9 14,-2.8 -2,-0.5 2,-0.8 -0.954 11.4-168.4-126.8 114.9 8.0 -3.8 -3.8 5 77 A T E -b 71 0B 36 65,-3.3 67,-2.9 -2,-0.5 2,-0.9 -0.881 16.9-152.4 -98.9 107.4 5.4 -6.5 -4.4 6 78 A L E -b 72 0B 0 -2,-0.8 10,-2.9 10,-0.3 2,-0.7 -0.691 11.6-170.5 -87.8 105.0 2.3 -5.4 -2.6 7 79 A K E -bC 73 15B 105 65,-3.2 67,-2.2 -2,-0.9 2,-0.7 -0.863 6.8-157.0-100.2 117.3 0.3 -8.6 -1.6 8 80 A K E + C 0 14B 3 6,-2.3 6,-2.4 -2,-0.7 67,-0.2 -0.822 23.7 164.2-101.0 109.3 -3.1 -7.8 -0.3 9 81 A I + 0 0 93 -2,-0.7 -1,-0.1 65,-0.4 66,-0.1 -0.044 59.7 74.6-112.6 30.3 -4.6 -10.5 1.9 10 82 A Q S S+ 0 0 70 64,-0.4 67,-0.1 66,-0.1 65,-0.1 0.753 92.1 1.8-104.1 -89.8 -7.3 -8.4 3.5 11 83 A A S S- 0 0 24 65,-1.1 -1,-0.1 1,-0.1 -2,-0.1 -0.920 132.8 -12.1-164.1 136.7 -10.4 -7.5 1.4 12 84 A P S S- 0 0 100 0, 0.0 -1,-0.1 0, 0.0 65,-0.1 -0.925 102.0-147.9 -81.2 16.6 -11.4 -8.1 -1.3 13 85 A K + 0 0 125 63,-0.3 2,-0.3 1,-0.1 -4,-0.2 0.513 28.0 155.4 72.6 143.5 -7.7 -9.3 -1.5 14 86 A F E -C 8 0B 56 -6,-2.4 -6,-2.3 -3,-0.1 2,-0.4 -0.957 36.4-111.3-175.1-177.5 -5.4 -9.2 -4.5 15 87 A S E +C 7 0B 92 -2,-0.3 2,-0.2 -8,-0.2 -8,-0.2 -0.966 37.0 162.8-138.2 120.1 -1.7 -9.2 -5.5 16 88 A I - 0 0 34 -10,-2.9 2,-0.3 -2,-0.4 -10,-0.3 -0.751 19.3-150.0-127.5 175.9 0.0 -6.2 -7.1 17 89 A E - 0 0 115 -12,-0.3 2,-0.3 -2,-0.2 -12,-0.2 -0.995 10.4-176.5-149.8 146.3 3.5 -5.0 -7.7 18 90 A H E -A 4 0A 21 -14,-2.8 -14,-1.9 -2,-0.3 2,-0.4 -0.991 13.7-152.4-144.5 152.6 5.2 -1.6 -8.1 19 91 A D E +A 3 0A 101 -2,-0.3 2,-0.3 -16,-0.2 -16,-0.2 -0.987 26.0 159.5-128.2 122.1 8.7 -0.2 -8.8 20 92 A F - 0 0 63 -18,-1.2 -18,-0.3 -2,-0.4 -2,-0.0 -0.928 41.3 -99.8-137.7 161.4 9.7 3.2 -7.5 21 93 A S > - 0 0 88 -2,-0.3 3,-2.8 1,-0.1 39,-0.2 -0.569 41.0-107.3 -84.9 148.4 13.0 5.1 -6.9 22 94 A P T 3 S+ 0 0 56 0, 0.0 39,-0.9 0, 0.0 38,-0.3 0.688 114.9 61.1 -51.7 -28.9 14.3 5.2 -3.3 23 95 A S T 3 S+ 0 0 88 37,-0.2 2,-0.1 36,-0.1 -2,-0.0 0.508 84.6 100.5 -81.1 -2.1 13.5 8.9 -2.7 24 96 A D < - 0 0 41 -3,-2.8 36,-2.9 35,-0.1 37,-0.3 -0.355 69.8-128.4 -75.4 163.4 9.8 8.1 -3.3 25 97 A T B >> -F 59 0C 14 34,-0.2 4,-1.7 35,-0.1 3,-0.7 -0.827 16.7-118.8-118.3 155.9 7.5 7.8 -0.2 26 98 A I H 3> S+ 0 0 0 32,-2.9 4,-2.5 -2,-0.3 31,-0.2 0.846 116.2 60.5 -53.2 -34.4 5.0 5.2 1.0 27 99 A L H 3> S+ 0 0 38 2,-0.2 4,-3.2 1,-0.2 -1,-0.2 0.857 101.4 51.0 -65.9 -35.7 2.5 8.1 0.8 28 100 A Q H <> S+ 0 0 92 -3,-0.7 4,-1.2 2,-0.2 -1,-0.2 0.897 110.6 48.8 -69.3 -38.8 3.1 8.4 -2.9 29 101 A I H X S+ 0 0 1 -4,-1.7 4,-2.0 2,-0.2 -2,-0.2 0.894 113.1 49.0 -63.1 -40.7 2.5 4.7 -3.3 30 102 A K H X S+ 0 0 2 -4,-2.5 4,-2.4 26,-0.2 -2,-0.2 0.946 108.0 51.4 -63.0 -51.6 -0.6 5.1 -1.2 31 103 A Q H X S+ 0 0 97 -4,-3.2 4,-2.4 1,-0.2 -1,-0.2 0.787 109.5 54.8 -54.1 -27.0 -1.8 8.0 -3.3 32 104 A H H X S+ 0 0 85 -4,-1.2 4,-1.8 2,-0.2 -1,-0.2 0.921 106.2 47.1 -76.3 -44.5 -1.2 5.7 -6.2 33 105 A L H <>S+ 0 0 3 -4,-2.0 5,-3.7 1,-0.2 6,-0.9 0.829 114.8 49.7 -66.3 -31.5 -3.4 2.9 -4.9 34 106 A I H ><5S+ 0 0 43 -4,-2.4 3,-1.9 4,-0.2 -2,-0.2 0.944 110.1 49.1 -65.8 -48.7 -6.0 5.5 -4.2 35 107 A S H 3<5S+ 0 0 88 -4,-2.4 -2,-0.2 1,-0.3 -1,-0.2 0.741 112.6 47.8 -68.7 -23.7 -5.7 6.9 -7.7 36 108 A E T 3<5S- 0 0 64 -4,-1.8 -1,-0.3 -5,-0.1 -2,-0.2 0.219 116.2-116.9 -99.3 13.3 -6.1 3.4 -9.2 37 109 A E T < 5S+ 0 0 174 -3,-1.9 -3,-0.2 -5,-0.1 -2,-0.1 0.871 80.4 124.5 54.8 44.6 -9.0 2.8 -6.9 38 110 A K S S+ 0 0 38 -2,-0.3 3,-1.1 1,-0.2 -1,-0.1 0.898 121.2 46.9 -59.7 -42.8 -3.4 6.6 2.3 43 115 A S T 3 S+ 0 0 83 1,-0.3 -1,-0.2 3,-0.1 13,-0.0 0.737 98.5 68.2 -74.3 -23.9 -3.9 5.4 5.9 44 116 A E T 3 S+ 0 0 95 -3,-0.3 33,-1.5 32,-0.1 2,-0.5 0.470 92.8 76.2 -74.3 -0.7 -6.5 2.8 4.9 45 117 A I E < -D 76 0B 1 -3,-1.1 2,-0.7 31,-0.2 31,-0.2 -0.963 69.2-164.4-111.8 116.9 -3.5 1.1 3.3 46 118 A K E -D 75 0B 58 29,-2.3 29,-3.0 -2,-0.5 2,-0.6 -0.905 3.4-168.8-103.7 113.6 -1.1 -0.6 5.6 47 119 A L E -D 74 0B 0 -2,-0.7 7,-2.0 7,-0.4 2,-0.4 -0.900 8.0-176.2-100.7 123.8 2.3 -1.4 4.0 48 120 A L E -DE 73 53B 21 25,-2.1 25,-2.2 -2,-0.6 2,-0.6 -0.979 13.6-160.1-122.1 134.2 4.5 -3.8 6.0 49 121 A L E > S-DE 72 52B 24 3,-2.1 3,-1.9 -2,-0.4 23,-0.1 -0.945 81.3 -22.2-115.0 110.8 8.0 -4.8 5.2 50 122 A K T 3 S- 0 0 173 -2,-0.6 -1,-0.2 21,-0.6 3,-0.1 0.814 128.5 -51.3 62.6 31.7 9.1 -8.0 7.0 51 123 A G T 3 S+ 0 0 60 1,-0.3 2,-0.5 22,-0.0 -1,-0.3 0.378 109.1 133.2 86.8 -5.0 6.4 -7.4 9.6 52 124 A K E < -E 49 0B 138 -3,-1.9 -3,-2.1 1,-0.1 2,-0.6 -0.693 60.1-125.4 -83.7 125.3 7.7 -3.9 10.1 53 125 A V E -E 48 0B 72 -2,-0.5 2,-0.3 -5,-0.2 -5,-0.2 -0.589 24.0-153.0 -71.9 112.2 4.9 -1.3 10.2 54 126 A L - 0 0 5 -7,-2.0 -7,-0.4 -2,-0.6 2,-0.1 -0.705 16.5-123.4 -86.3 140.0 5.7 1.4 7.6 55 127 A H > - 0 0 114 -2,-0.3 3,-1.7 -9,-0.1 -29,-0.2 -0.377 27.0 -98.7 -84.5 163.8 4.3 4.8 8.3 56 128 A D T 3 S+ 0 0 65 1,-0.3 -26,-0.2 -30,-0.1 -1,-0.1 0.859 120.8 24.1 -46.7 -47.5 2.1 6.8 5.9 57 129 A N T 3 S+ 0 0 82 -31,-0.2 -1,-0.3 -30,-0.1 2,-0.2 -0.020 82.9 150.7-115.1 29.7 4.9 9.0 4.5 58 130 A L < - 0 0 34 -3,-1.7 -32,-2.9 -33,-0.1 2,-0.2 -0.432 45.8-123.8 -65.2 129.5 8.0 6.7 5.1 59 131 A F B >> -F 25 0C 111 -34,-0.2 4,-1.4 -2,-0.2 3,-1.3 -0.523 7.9-133.3 -74.5 142.8 10.7 7.4 2.5 60 132 A L H 3> S+ 0 0 0 -36,-2.9 4,-3.2 -38,-0.3 5,-0.4 0.659 104.6 66.2 -72.7 -15.4 11.9 4.4 0.5 61 133 A S H 34 S+ 0 0 54 -39,-0.9 -1,-0.3 -37,-0.3 -38,-0.1 0.698 104.4 44.8 -76.4 -20.5 15.5 5.4 1.1 62 134 A D H <4 S+ 0 0 122 -3,-1.3 -2,-0.2 -40,-0.2 -1,-0.2 0.767 116.9 46.0 -88.6 -31.8 14.9 4.7 4.8 63 135 A L H < S- 0 0 24 -4,-1.4 -2,-0.2 -41,-0.2 3,-0.2 0.951 82.7-167.7 -71.2 -52.8 13.2 1.4 4.0 64 136 A K < - 0 0 149 -4,-3.2 2,-1.0 1,-0.2 -3,-0.1 0.974 10.5-156.3 58.3 58.6 15.8 0.2 1.5 65 137 A V - 0 0 2 -5,-0.4 -62,-0.9 5,-0.1 -1,-0.2 -0.549 8.3-154.3 -71.3 103.0 13.6 -2.6 0.1 66 138 A T > - 0 0 69 -2,-1.0 3,-2.5 -3,-0.2 -64,-0.1 -0.523 24.9-116.5 -76.5 145.3 16.0 -5.0 -1.4 67 139 A P G > S+ 0 0 85 0, 0.0 3,-0.9 0, 0.0 -1,-0.1 0.734 117.0 61.5 -50.4 -25.8 14.9 -7.4 -4.2 68 140 A A G 3 S+ 0 0 90 1,-0.2 3,-0.1 2,-0.1 -3,-0.0 0.695 114.1 33.0 -76.6 -19.7 15.6 -10.2 -1.8 69 141 A N G < S+ 0 0 65 -3,-2.5 -1,-0.2 -66,-0.1 -3,-0.1 -0.198 80.1 128.4-125.8 39.5 12.9 -8.8 0.6 70 142 A S < + 0 0 20 -3,-0.9 -65,-3.3 -66,-0.1 2,-0.7 0.547 36.8 108.6 -78.9 -8.3 10.6 -7.4 -2.0 71 143 A T E -b 5 0B 85 -67,-0.2 -21,-0.6 -3,-0.1 2,-0.4 -0.610 50.9-172.7 -76.2 111.3 7.5 -9.2 -0.7 72 144 A I E -bD 6 49B 0 -67,-2.9 -65,-3.2 -2,-0.7 2,-0.8 -0.870 20.7-138.8-107.5 136.3 5.4 -6.5 0.9 73 145 A T E -bD 7 48B 45 -25,-2.2 -25,-2.1 -2,-0.4 2,-0.7 -0.845 21.5-168.6 -92.4 111.8 2.2 -7.2 2.9 74 146 A V E - D 0 47B 0 -67,-2.2 2,-0.8 -2,-0.8 -65,-0.4 -0.895 5.1-168.7-107.3 113.0 -0.4 -4.6 2.0 75 147 A M E + D 0 46B 64 -29,-3.0 -29,-2.3 -2,-0.7 2,-0.4 -0.846 17.8 166.8-102.3 101.3 -3.4 -4.5 4.2 76 148 A I E - D 0 45B 0 -2,-0.8 -65,-1.1 -31,-0.2 -63,-0.3 -0.942 20.8-171.5-118.1 137.3 -6.1 -2.4 2.6 77 149 A K - 0 0 89 -33,-1.5 -37,-0.1 -2,-0.4 -38,-0.1 -0.893 19.4-151.2-126.6 100.5 -9.7 -2.1 3.5 78 150 A P - 0 0 30 0, 0.0 2,-1.7 0, 0.0 -39,-0.0 -0.134 37.3 -83.3 -65.5 163.3 -11.8 -0.1 1.0 79 151 A N - 0 0 103 1,-0.1 2,-1.7 2,-0.0 3,-0.2 -0.526 47.7-173.7 -70.8 88.5 -14.9 1.9 1.8 80 152 A L + 0 0 99 -2,-1.7 -1,-0.1 1,-0.2 0, 0.0 -0.606 28.2 144.3 -87.1 78.8 -17.4 -0.9 1.7 81 153 A E - 0 0 83 -2,-1.7 -1,-0.2 0, 0.0 -2,-0.0 0.535 53.0-136.7 -96.4 -10.9 -20.5 1.3 2.2 82 154 A H + 0 0 114 -3,-0.2 4,-0.4 1,-0.1 -2,-0.1 0.825 62.1 128.3 61.6 38.3 -22.6 -0.8 -0.1 83 155 A H S S+ 0 0 141 2,-0.1 -1,-0.1 1,-0.1 -3,-0.0 0.934 83.6 24.7 -85.7 -54.9 -24.2 2.1 -2.0 84 156 A H S S+ 0 0 148 1,-0.2 -1,-0.1 3,-0.1 -2,-0.0 0.760 123.2 57.6 -77.9 -26.1 -23.6 1.0 -5.6 85 157 A H S S+ 0 0 139 1,-0.1 2,-0.6 2,-0.0 -1,-0.2 0.767 97.5 69.8 -76.3 -25.8 -23.3 -2.6 -4.5 86 158 A H 0 0 139 -4,-0.4 -1,-0.1 1,-0.0 0, 0.0 -0.845 360.0 360.0 -99.6 119.7 -26.8 -2.5 -3.0 87 159 A H 0 0 213 -2,-0.6 -3,-0.1 0, 0.0 -4,-0.0 -0.878 360.0 360.0-114.2 360.0 -29.7 -2.3 -5.5