==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-NOV-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 18-SEP-12 2LYF . COMPND 2 MOLECULE: RTD-1; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.C.CONIBEAR,K.ROSENGREN,P.J.HARVEY,D.J.CRAIK . 18 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2019.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 9 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 44.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 71 0, 0.0 2,-0.5 0, 0.0 17,-0.3 0.000 360.0 360.0 360.0 -11.8 -13.3 -2.9 1.0 2 2 A F E -A 17 0A 128 15,-2.3 15,-3.3 2,-0.0 2,-0.5 -0.800 360.0-146.2 -94.8 132.0 -11.4 -2.7 -2.2 3 3 A a E +A 16 0A 73 -2,-0.5 2,-0.3 13,-0.3 13,-0.3 -0.849 22.9 167.3-109.0 133.4 -7.9 -3.8 -2.1 4 4 A R E -A 15 0A 136 11,-2.4 11,-3.2 -2,-0.5 2,-0.5 -0.945 26.7-127.6-137.0 154.2 -5.1 -2.3 -4.0 5 5 A b E -A 14 0A 85 -2,-0.3 2,-0.5 9,-0.3 9,-0.3 -0.914 16.0-170.2-117.5 134.0 -1.4 -2.6 -3.7 6 6 A L E -A 13 0A 106 7,-3.4 7,-3.4 -2,-0.5 2,-0.4 -0.964 11.0-155.8-117.7 131.7 1.2 0.1 -3.4 7 7 A c E -A 12 0A 69 -2,-0.5 2,-0.5 5,-0.3 5,-0.3 -0.897 7.4-167.7-114.8 140.3 4.9 -0.7 -3.7 8 8 A R E > S-A 11 0A 183 3,-3.2 3,-1.9 -2,-0.4 -2,-0.0 -0.942 75.2 -28.2-129.3 105.4 7.7 1.3 -2.3 9 9 A R T 3 S- 0 0 247 -2,-0.5 3,-0.1 1,-0.3 -1,-0.1 0.830 127.5 -45.7 61.1 35.7 11.2 0.4 -3.4 10 10 A G T 3 S+ 0 0 72 1,-0.3 2,-0.7 0, 0.0 -1,-0.3 0.237 116.9 113.9 94.2 -14.0 10.3 -3.2 -4.0 11 11 A V E < -A 8 0A 107 -3,-1.9 -3,-3.2 2,-0.0 2,-0.5 -0.815 56.3-152.9 -92.8 114.6 8.4 -3.5 -0.8 12 12 A c E -A 7 0A 79 -2,-0.7 2,-0.5 -5,-0.3 -5,-0.3 -0.761 14.5-176.1 -97.2 132.2 4.8 -4.0 -1.5 13 13 A R E -A 6 0A 162 -7,-3.4 -7,-3.4 -2,-0.5 2,-0.5 -0.991 14.7-147.6-122.3 127.0 2.1 -3.0 0.8 14 14 A b E -A 5 0A 74 -2,-0.5 2,-0.5 -9,-0.3 -9,-0.3 -0.824 14.3-167.9 -99.3 135.3 -1.4 -3.7 0.1 15 15 A I E -A 4 0A 53 -11,-3.2 -11,-2.4 -2,-0.5 2,-0.5 -0.982 9.7-150.0-126.9 126.5 -4.0 -1.3 1.3 16 16 A a E -A 3 0A 74 -2,-0.5 2,-0.4 -13,-0.3 -13,-0.3 -0.846 13.7-175.5 -98.1 131.9 -7.7 -1.8 1.4 17 17 A T E A 2 0A 56 -15,-3.3 -15,-2.3 -2,-0.5 -2,-0.0 -0.999 360.0 360.0-130.8 122.8 -9.9 1.1 1.0 18 18 A R 0 0 244 -2,-0.4 -15,-0.1 -17,-0.3 -1,-0.0 0.646 360.0 360.0 58.0 360.0 -13.7 0.8 1.3