==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-MAR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 19-SEP-12 2LYQ . COMPND 2 MOLECULE: CYLR2; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; . AUTHOR M.JAREMKO,L.JAREMKO,H.KIM,M.CHO,C.D.SCHWIETERS,K.GILLER,S.BE . 66 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4870.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 37.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 194 0, 0.0 2,-0.7 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 -62.5 12.2 6.0 -7.3 2 2 A I - 0 0 112 64,-0.2 2,-2.0 62,-0.0 64,-0.1 -0.919 360.0 -70.7-110.6 109.3 12.9 5.8 -3.6 3 3 A I S S+ 0 0 48 -2,-0.7 2,-4.8 1,-0.2 6,-0.2 -0.161 81.4 151.6 39.7 -65.4 10.2 3.9 -1.8 4 4 A N + 0 0 65 -2,-2.0 2,-0.3 62,-0.4 -1,-0.2 -0.067 56.7 22.6 54.6 -56.5 7.8 6.8 -2.5 5 5 A N S > S- 0 0 41 -2,-4.8 4,-2.1 1,-0.1 5,-0.2 -0.964 75.4-108.9-143.1 166.5 4.7 4.7 -2.6 6 6 A L H > S+ 0 0 5 -2,-0.3 4,-2.8 1,-0.2 5,-0.1 0.904 119.4 50.8 -60.2 -44.3 2.8 1.6 -1.6 7 7 A K H > S+ 0 0 54 2,-0.2 4,-3.6 1,-0.2 5,-0.3 0.909 106.3 55.6 -61.6 -42.7 2.9 0.3 -5.2 8 8 A L H > S+ 0 0 47 1,-0.3 4,-0.8 -5,-0.2 -1,-0.2 0.923 114.4 38.4 -60.8 -42.6 6.6 1.0 -5.4 9 9 A I H X S+ 0 0 20 -4,-2.1 4,-1.0 -6,-0.2 -1,-0.3 0.864 116.5 55.2 -67.0 -43.4 7.2 -1.2 -2.4 10 10 A R H >X>S+ 0 0 6 -4,-2.8 5,-1.1 1,-0.2 3,-0.7 0.915 100.1 55.4 -61.7 -46.1 4.6 -3.6 -3.6 11 11 A E H ><5S+ 0 0 101 -4,-3.6 3,-0.8 1,-0.3 -1,-0.2 0.825 100.1 62.7 -57.3 -34.1 6.0 -4.3 -7.1 12 12 A K H 3<5S+ 0 0 131 -4,-0.8 -1,-0.3 -5,-0.3 -2,-0.2 0.911 111.0 37.0 -61.0 -39.6 9.3 -5.3 -5.4 13 13 A K H <<5S- 0 0 65 -4,-1.0 -1,-0.3 -3,-0.7 -2,-0.2 0.375 109.9-128.3 -95.8 10.3 7.4 -8.2 -3.7 14 14 A K T <<5 + 0 0 165 -3,-0.8 2,-0.3 -4,-0.5 -3,-0.2 0.454 58.3 145.9 62.5 3.9 5.3 -8.6 -6.9 15 15 A I < - 0 0 37 -5,-1.1 -1,-0.2 38,-0.1 -2,-0.1 -0.563 38.8-144.5 -75.4 127.4 2.1 -8.5 -4.9 16 16 A S >> - 0 0 58 -2,-0.3 4,-1.9 -3,-0.1 3,-0.6 -0.425 24.2-105.6 -88.9 168.3 -0.7 -6.9 -6.9 17 17 A Q H 3> S+ 0 0 45 1,-0.2 4,-4.5 2,-0.2 5,-0.3 0.908 119.3 61.7 -59.2 -40.8 -3.5 -4.6 -5.6 18 18 A S H 3> S+ 0 0 71 1,-0.2 4,-0.6 2,-0.2 -1,-0.2 0.865 106.0 46.7 -55.9 -37.0 -5.9 -7.4 -6.1 19 19 A E H <4 S+ 0 0 94 -3,-0.6 3,-0.3 1,-0.2 4,-0.3 0.975 125.8 26.9 -65.3 -60.3 -4.0 -9.5 -3.5 20 20 A L H >< S+ 0 0 2 -4,-1.9 3,-1.4 1,-0.2 4,-0.5 0.781 107.5 72.9 -70.5 -41.3 -3.6 -6.8 -0.9 21 21 A A H >< S+ 0 0 0 -4,-4.5 3,-0.6 1,-0.3 5,-0.4 0.736 88.1 61.8 -57.8 -28.5 -6.7 -4.7 -1.7 22 22 A A G >< S+ 0 0 63 -4,-0.6 3,-0.8 -3,-0.3 -1,-0.3 0.806 98.0 58.9 -63.6 -36.1 -9.2 -7.1 -0.3 23 23 A L G < S+ 0 0 47 -3,-1.4 -1,-0.2 -4,-0.3 -2,-0.2 0.660 84.9 75.6 -67.7 -29.2 -7.7 -6.9 3.3 24 24 A L G < S- 0 0 4 -3,-0.6 -1,-0.2 -4,-0.5 -2,-0.1 0.652 96.7-126.8 -66.6 -16.3 -8.1 -3.2 3.9 25 25 A E S < S+ 0 0 151 -3,-0.8 2,-0.3 1,-0.3 -2,-0.1 0.775 76.9 106.8 69.1 33.5 -11.9 -3.5 4.5 26 26 A V S S- 0 0 61 -5,-0.4 -1,-0.3 19,-0.1 -2,-0.2 -0.870 92.1 -69.3-129.7 159.6 -12.6 -0.8 1.9 27 27 A S > - 0 0 68 -2,-0.3 4,-2.0 1,-0.2 5,-0.2 -0.309 46.2-142.6 -55.7 128.7 -14.0 -1.5 -1.5 28 28 A R H > S+ 0 0 106 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.919 97.8 46.4 -63.9 -44.6 -11.2 -3.3 -3.4 29 29 A Q H > S+ 0 0 137 2,-0.2 4,-3.8 1,-0.2 5,-0.2 0.875 107.5 59.1 -63.8 -38.9 -11.8 -1.6 -6.7 30 30 A T H > S+ 0 0 58 2,-0.2 4,-4.5 1,-0.2 5,-0.2 0.956 108.8 42.5 -60.5 -46.9 -12.1 1.8 -5.1 31 31 A I H X S+ 0 0 9 -4,-2.0 4,-4.6 2,-0.2 5,-0.4 0.929 114.7 52.3 -64.0 -39.8 -8.6 1.6 -3.6 32 32 A N H X S+ 0 0 56 -4,-2.2 4,-0.5 -5,-0.2 -2,-0.2 0.921 116.5 39.3 -61.4 -42.0 -7.4 0.1 -6.9 33 33 A G H < S+ 0 0 30 -4,-3.8 -2,-0.2 2,-0.2 -1,-0.2 0.923 119.7 47.1 -70.5 -46.6 -9.0 3.1 -8.7 34 34 A I H X>S+ 0 0 25 -4,-4.5 4,-4.6 1,-0.2 5,-0.9 0.934 107.2 53.2 -65.4 -44.6 -7.9 5.5 -6.0 35 35 A E H <5S+ 0 0 16 -4,-4.6 2,-1.5 1,-0.3 -1,-0.2 0.803 92.8 82.3 -59.5 -20.9 -4.3 4.3 -5.8 36 36 A K T <5S- 0 0 130 -4,-0.5 -1,-0.3 -5,-0.4 -2,-0.1 -0.176 132.6 -42.6 -80.0 49.3 -4.6 5.0 -9.5 37 37 A N T 45S+ 0 0 157 -2,-1.5 -2,-0.2 -3,-0.4 -1,-0.2 0.391 127.1 79.9 110.1 5.7 -3.9 8.7 -8.8 38 38 A K T <5S- 0 0 136 -4,-4.6 2,-0.3 1,-0.3 -3,-0.2 0.872 96.7 -62.5-101.9 -59.7 -5.9 9.6 -5.8 39 39 A Y < - 0 0 148 -5,-0.9 -1,-0.3 -8,-0.2 3,-0.1 -0.947 42.3 -95.5-178.8 164.3 -4.0 8.4 -2.7 40 40 A N - 0 0 57 -2,-0.3 3,-0.1 1,-0.2 6,-0.1 -0.422 59.8 -75.6 -82.0 169.0 -2.6 5.5 -0.8 41 41 A P - 0 0 5 0, 0.0 -1,-0.2 0, 0.0 5,-0.1 -0.292 61.0 -92.6 -59.8 146.5 -4.5 3.7 2.0 42 42 A S > - 0 0 78 1,-0.1 4,-5.3 3,-0.1 5,-0.3 -0.173 40.7-108.7 -57.6 153.1 -4.4 5.7 5.3 43 43 A L H > S+ 0 0 73 2,-0.3 4,-2.3 1,-0.2 5,-0.1 0.949 123.6 43.2 -60.0 -42.4 -1.5 4.6 7.4 44 44 A Q H > S+ 0 0 178 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.946 119.0 46.3 -63.8 -41.3 -3.8 2.8 9.9 45 45 A L H > S+ 0 0 38 1,-0.2 4,-1.6 2,-0.2 3,-0.4 0.925 110.2 53.0 -62.1 -45.1 -5.6 1.5 6.9 46 46 A A H X S+ 0 0 0 -4,-5.3 4,-5.2 1,-0.2 5,-0.2 0.850 100.5 62.5 -60.7 -33.6 -2.3 0.6 5.3 47 47 A L H X S+ 0 0 87 -4,-2.3 4,-2.8 -5,-0.3 -1,-0.2 0.917 100.9 51.8 -60.2 -42.1 -1.4 -1.3 8.5 48 48 A K H X S+ 0 0 65 -4,-1.4 4,-1.0 -3,-0.4 -1,-0.2 0.951 120.7 33.3 -58.9 -48.5 -4.4 -3.6 7.9 49 49 A I H X S+ 0 0 0 -4,-1.6 4,-1.3 1,-0.2 3,-0.4 0.907 115.5 59.1 -72.5 -40.5 -3.2 -4.3 4.3 50 50 A A H <>S+ 0 0 1 -4,-5.2 5,-1.5 1,-0.2 4,-0.2 0.848 98.0 61.2 -56.0 -37.6 0.5 -3.9 5.4 51 51 A Y H ><5S+ 0 0 174 -4,-2.8 3,-0.6 1,-0.3 -1,-0.2 0.939 115.5 31.2 -58.7 -46.4 0.0 -6.8 7.8 52 52 A Y H 3<5S+ 0 0 131 -4,-1.0 -1,-0.3 -3,-0.4 -2,-0.2 0.560 108.6 77.4 -82.4 -14.8 -0.9 -9.1 5.0 53 53 A L T 3<5S- 0 0 2 -4,-1.3 -1,-0.2 2,-0.3 -2,-0.2 0.295 99.8-122.9 -81.4 4.6 1.4 -7.2 2.6 54 54 A N T < 5S+ 0 0 117 -3,-0.6 -3,-0.1 -4,-0.2 -2,-0.1 0.919 89.7 98.3 55.0 33.8 4.7 -8.6 3.8 55 55 A T S > - 0 0 63 0, 0.0 4,-1.3 0, 0.0 3,-1.2 -0.251 24.9-116.0 -60.6 154.1 5.1 -3.4 7.8 57 57 A L H >> S+ 0 0 24 1,-0.3 4,-4.0 2,-0.2 3,-0.9 0.947 125.7 53.4 -56.7 -39.2 3.3 -0.1 8.0 58 58 A E H 34 S+ 0 0 114 1,-0.3 -1,-0.3 2,-0.2 5,-0.1 0.763 98.0 66.9 -62.7 -24.3 6.6 1.2 9.1 59 59 A D H <4 S+ 0 0 52 -3,-1.2 -1,-0.3 1,-0.2 -2,-0.2 0.877 115.9 25.2 -67.4 -35.1 7.9 -0.4 5.9 60 60 A I H << S+ 0 0 40 -4,-1.3 2,-2.1 -3,-0.9 -2,-0.2 0.770 113.0 70.3 -97.5 -29.6 5.9 2.2 3.9 61 61 A F S < S+ 0 0 116 -4,-4.0 2,-0.2 -5,-0.3 -1,-0.2 -0.436 75.1 160.0 -85.6 64.4 5.9 4.8 6.6 62 62 A Q - 0 0 78 -2,-2.1 2,-2.3 2,-0.2 -3,-0.1 -0.574 59.8-103.4 -85.6 151.4 9.5 5.4 6.2 63 63 A W S S+ 0 0 232 -2,-0.2 -1,-0.1 1,-0.2 -2,-0.1 0.056 104.1 92.7 -67.9 38.8 11.2 8.6 7.3 64 64 A Q - 0 0 93 -2,-2.3 2,-4.0 -62,-0.0 -60,-0.2 -0.682 58.6-173.6-128.3 69.1 11.1 9.6 3.7 65 65 A P 0 0 125 0, 0.0 -2,-0.1 0, 0.0 -4,-0.1 -0.217 360.0 360.0 -65.1 53.5 7.8 11.5 3.5 66 66 A E 0 0 162 -2,-4.0 -62,-0.4 -64,-0.1 -64,-0.2 -0.759 360.0 360.0-147.2 360.0 8.2 11.8 -0.3