==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=15-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-FEB-10 3LYW . COMPND 2 MOLECULE: YBBR FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; . AUTHOR J.SEETHARAMAN,S.LEW,D.WANG,H.JANJUA,K.CUNNINGHAM,L.OWENS, . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5620.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 57.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 7.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 32.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 190 0, 0.0 33,-0.2 0, 0.0 30,-0.1 0.000 360.0 360.0 360.0 -30.9 -7.5 44.4 31.7 2 2 A D - 0 0 91 31,-2.1 29,-0.3 1,-0.1 32,-0.1 0.885 360.0-153.6 36.7 58.1 -5.3 41.8 29.8 3 3 A P - 0 0 27 0, 0.0 2,-0.6 0, 0.0 28,-0.5 -0.250 12.3-137.5 -63.6 143.1 -4.2 40.3 33.1 4 4 A T E -A 30 0A 86 26,-0.2 2,-0.3 24,-0.0 26,-0.2 -0.913 30.3-161.1-100.3 122.7 -0.9 38.5 33.5 5 5 A L E -A 29 0A 13 24,-2.8 24,-3.0 -2,-0.6 2,-0.6 -0.759 21.8-149.5-111.1 155.4 -1.5 35.4 35.6 6 6 A T E -A 28 0A 75 -2,-0.3 2,-0.3 22,-0.2 22,-0.2 -0.963 29.2-179.3-120.4 106.8 0.7 33.1 37.6 7 7 A L E -A 27 0A 3 20,-2.8 20,-3.0 -2,-0.6 2,-0.2 -0.799 27.6-119.0-111.4 151.7 -0.9 29.6 37.5 8 8 A S E -Ab 26 44A 57 35,-0.6 37,-2.2 -2,-0.3 2,-0.4 -0.575 34.2-116.9 -83.1 152.3 0.2 26.3 39.1 9 9 A L E - b 0 45A 8 16,-0.5 2,-0.4 15,-0.2 37,-0.2 -0.795 29.1-167.3 -96.9 131.7 1.0 23.5 36.7 10 10 A I E - b 0 46A 58 35,-2.4 37,-2.1 -2,-0.4 2,-0.5 -0.917 15.2-134.5-118.8 141.5 -1.1 20.3 36.8 11 11 A A E - b 0 47A 23 -2,-0.4 2,-0.3 35,-0.2 3,-0.3 -0.818 20.4-161.2 -97.2 132.9 -0.4 17.0 35.2 12 12 A K E + b 0 48A 81 35,-3.1 37,-2.8 -2,-0.5 38,-0.2 -0.839 66.6 9.5-112.1 151.0 -3.2 15.2 33.4 13 13 A N S S- 0 0 102 -2,-0.3 38,-0.2 1,-0.2 -1,-0.2 0.826 73.5-174.3 53.7 38.8 -3.5 11.6 32.4 14 14 A T - 0 0 53 -3,-0.3 -1,-0.2 1,-0.1 4,-0.1 -0.483 37.5-101.4 -62.4 124.8 -0.4 10.5 34.4 15 15 A P > - 0 0 27 0, 0.0 3,-0.8 0, 0.0 -1,-0.1 -0.120 40.8-103.5 -48.9 140.5 0.1 6.8 33.5 16 16 A A T 3 S+ 0 0 81 1,-0.2 70,-0.1 -3,-0.1 3,-0.1 -0.295 105.4 23.3 -64.4 154.0 -1.2 4.5 36.1 17 17 A N T 3 S+ 0 0 119 1,-0.2 69,-3.7 68,-0.1 2,-0.3 0.831 107.5 101.6 58.4 32.5 1.4 2.8 38.3 18 18 A S E < -E 85 0B 11 -3,-0.8 2,-0.4 67,-0.3 67,-0.3 -0.991 55.6-151.9-144.7 150.6 3.8 5.7 37.5 19 19 A X E -E 84 0B 112 65,-3.1 65,-2.2 -2,-0.3 2,-0.5 -0.976 18.5-124.7-131.1 142.6 5.0 8.7 39.4 20 20 A I E -E 83 0B 42 -2,-0.4 63,-0.2 63,-0.2 4,-0.1 -0.696 20.7-171.9 -82.7 124.6 6.2 12.2 38.4 21 21 A X + 0 0 91 61,-2.8 2,-0.3 -2,-0.5 -1,-0.2 0.659 59.4 84.7 -90.8 -18.8 9.6 12.7 40.0 22 22 A T S S- 0 0 49 60,-0.7 2,-0.4 1,-0.0 -2,-0.0 -0.662 80.6-122.3 -91.6 138.6 9.9 16.4 39.0 23 23 A K - 0 0 186 -2,-0.3 -2,-0.1 1,-0.1 -1,-0.0 -0.643 35.3-121.2 -75.6 125.8 8.4 19.3 41.0 24 24 A L - 0 0 42 -2,-0.4 -15,-0.2 -15,-0.1 -1,-0.1 -0.571 25.7-135.5 -74.5 125.1 6.1 21.1 38.6 25 25 A P - 0 0 53 0, 0.0 -16,-0.5 0, 0.0 2,-0.1 -0.200 22.4-102.2 -73.0 167.2 7.1 24.8 38.1 26 26 A S E -A 8 0A 72 -18,-0.2 2,-0.4 -20,-0.0 -18,-0.2 -0.461 34.6-134.5 -84.2 165.1 4.6 27.7 38.1 27 27 A V E -A 7 0A 0 -20,-3.0 -20,-2.8 -2,-0.1 2,-0.5 -0.978 4.1-146.7-128.1 136.3 3.5 29.2 34.8 28 28 A R E -AC 6 75A 155 47,-3.7 47,-2.6 -2,-0.4 2,-0.4 -0.887 19.7-168.1-102.4 129.3 3.2 32.9 33.8 29 29 A V E -AC 5 74A 0 -24,-3.0 -24,-2.8 -2,-0.5 2,-0.4 -0.968 11.9-156.9-124.7 128.3 0.4 33.6 31.3 30 30 A K E -AC 4 73A 98 43,-2.2 42,-2.4 -2,-0.4 43,-1.5 -0.814 25.2-178.0 -97.9 141.5 -0.2 36.8 29.3 31 31 A T E - C 0 71A 5 -28,-0.5 2,-0.4 -2,-0.4 40,-0.2 -0.875 26.3-139.5-138.6 168.8 -3.7 37.4 28.2 32 32 A E E + C 0 70A 117 38,-2.1 38,-2.1 -2,-0.3 2,-0.2 -0.999 64.3 39.6-132.5 128.0 -6.1 39.6 26.2 33 33 A G E S- C 0 69A 25 -2,-0.4 -31,-2.1 36,-0.2 2,-0.3 -0.770 77.0 -82.7 130.5-175.5 -9.6 40.4 27.4 34 34 A Y + 0 0 134 34,-0.7 -2,-0.0 -2,-0.2 0, 0.0 -0.967 36.1 162.1-133.0 148.3 -11.4 41.1 30.6 35 35 A N > - 0 0 14 -2,-0.3 2,-0.9 3,-0.1 3,-0.6 -0.605 11.3-174.8-168.3 100.4 -12.9 38.9 33.4 36 36 A P T 3 S+ 0 0 73 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.738 80.2 39.0-101.9 85.4 -13.9 40.1 36.9 37 37 A S T 3 S+ 0 0 115 -2,-0.9 2,-0.8 1,-0.1 0, 0.0 0.328 75.7 122.3 154.1 9.1 -14.9 36.9 38.8 38 38 A I < - 0 0 31 -3,-0.6 2,-0.3 29,-0.1 -1,-0.1 -0.836 61.8-130.0-100.4 104.6 -12.4 34.3 37.6 39 39 A N - 0 0 120 -2,-0.8 3,-0.4 1,-0.2 4,-0.3 -0.323 13.7-158.1 -55.0 112.9 -10.6 32.8 40.5 40 40 A V S > S+ 0 0 61 -2,-0.3 3,-1.4 1,-0.2 -1,-0.2 0.902 93.2 49.0 -60.5 -43.9 -6.9 32.9 39.6 41 41 A N T 3 S+ 0 0 129 1,-0.3 -1,-0.2 -34,-0.1 -33,-0.1 0.697 106.9 57.2 -70.8 -18.2 -5.9 30.1 42.0 42 42 A E T 3 S+ 0 0 39 -3,-0.4 2,-0.4 2,-0.0 -1,-0.3 0.466 94.8 84.4 -89.2 -2.2 -8.8 28.0 40.7 43 43 A L < - 0 0 27 -3,-1.4 -35,-0.6 -4,-0.3 2,-0.3 -0.806 63.8-170.3-101.1 143.2 -7.2 28.3 37.2 44 44 A F E -b 8 0A 59 -2,-0.4 20,-2.2 -37,-0.2 2,-0.3 -0.939 23.7-143.0-138.2 156.1 -4.5 25.9 36.1 45 45 A A E -bD 9 63A 0 -37,-2.2 -35,-2.4 -2,-0.3 2,-0.3 -0.739 34.3-162.7-104.4 158.7 -1.9 25.3 33.4 46 46 A Y E -bD 10 62A 59 16,-2.9 16,-2.5 -2,-0.3 2,-0.4 -0.976 25.1-148.9-148.6 160.3 -1.4 21.7 32.5 47 47 A V E -b 11 0A 0 -37,-2.1 -35,-3.1 -2,-0.3 2,-0.7 -0.970 23.7-137.1-123.2 140.2 0.8 19.1 30.9 48 48 A D E +b 12 0A 56 12,-0.4 -35,-0.2 -2,-0.4 12,-0.1 -0.881 20.1 179.8-104.8 108.8 -0.8 16.0 29.3 49 49 A L > + 0 0 1 -37,-2.8 3,-2.0 -2,-0.7 -36,-0.1 0.238 25.4 153.3 -90.2 12.9 1.2 12.8 30.1 50 50 A S T 3 S- 0 0 62 1,-0.3 -36,-0.1 -38,-0.2 -2,-0.1 -0.160 72.9 -1.5 -46.9 128.5 -1.2 10.7 28.1 51 51 A G T 3 S+ 0 0 84 -38,-0.2 -1,-0.3 1,-0.2 2,-0.2 0.696 92.6 154.8 61.8 25.9 0.7 7.6 26.8 52 52 A S < - 0 0 26 -3,-2.0 -1,-0.2 1,-0.0 3,-0.1 -0.561 33.0-143.5 -86.3 149.5 4.1 8.5 28.3 53 53 A E - 0 0 138 -2,-0.2 30,-0.2 1,-0.2 -1,-0.0 -0.622 37.5 -80.9-101.9 164.8 6.8 5.9 29.2 54 54 A P S S+ 0 0 44 0, 0.0 2,-0.2 0, 0.0 30,-0.2 -0.160 90.1 60.1 -60.0 163.7 9.1 6.2 32.2 55 55 A G E S-F 83 0B 34 28,-3.3 28,-2.9 -3,-0.1 2,-0.5 -0.693 95.4 -41.0 115.2-167.5 12.1 8.4 31.8 56 56 A E E +F 82 0B 120 26,-0.2 2,-0.3 -2,-0.2 26,-0.2 -0.882 61.6 161.4-106.5 127.6 12.7 12.1 31.0 57 57 A H E -F 81 0B 52 24,-2.5 24,-2.9 -2,-0.5 2,-0.4 -0.935 35.1-118.0-139.2 161.7 10.5 13.8 28.4 58 58 A D E -F 80 0B 108 -2,-0.3 2,-0.4 22,-0.2 22,-0.2 -0.829 27.5-165.4-102.0 141.5 9.4 17.4 27.4 59 59 A Y E -F 79 0B 20 20,-2.5 20,-2.6 -2,-0.4 2,-0.4 -0.981 21.6-119.9-130.8 139.9 5.8 18.4 27.6 60 60 A E E -F 78 0B 125 -2,-0.4 -12,-0.4 18,-0.2 2,-0.4 -0.608 29.9-128.0 -76.5 130.3 4.0 21.4 26.1 61 61 A V - 0 0 3 16,-3.5 2,-0.3 -2,-0.4 -14,-0.2 -0.639 32.7-179.8 -81.8 131.4 2.4 23.7 28.7 62 62 A K E -D 46 0A 61 -16,-2.5 -16,-2.9 -2,-0.4 2,-0.4 -0.835 20.2-128.3-125.7 166.4 -1.2 24.4 28.0 63 63 A V E -D 45 0A 20 -2,-0.3 -18,-0.2 -18,-0.3 3,-0.1 -0.952 22.2-116.0-121.9 136.2 -3.9 26.5 29.8 64 64 A E - 0 0 50 -20,-2.2 -21,-0.0 -2,-0.4 -20,-0.0 -0.398 52.8 -87.0 -64.2 142.1 -7.3 25.4 30.8 65 65 A P - 0 0 127 0, 0.0 -1,-0.1 0, 0.0 5,-0.1 -0.220 44.1-160.8 -52.2 135.1 -10.0 27.5 29.0 66 66 A I > - 0 0 13 3,-0.5 3,-1.8 -3,-0.1 5,-0.0 -0.984 24.7-110.6-123.2 121.9 -10.9 30.8 30.7 67 67 A P T 3 S- 0 0 83 0, 0.0 3,-0.1 0, 0.0 -29,-0.1 -0.182 97.2 -0.1 -53.1 135.2 -14.1 32.5 29.8 68 68 A N T 3 S+ 0 0 130 1,-0.2 -34,-0.7 -35,-0.1 2,-0.4 0.686 111.6 109.1 59.4 21.6 -13.7 35.8 27.9 69 69 A I E < -C 33 0A 19 -3,-1.8 2,-0.5 -36,-0.2 -3,-0.5 -0.992 51.4-160.9-132.7 133.9 -9.9 35.4 28.0 70 70 A K E -C 32 0A 152 -38,-2.1 -38,-2.1 -2,-0.4 2,-0.5 -0.954 20.3-133.3-113.8 127.7 -7.5 34.6 25.2 71 71 A I E +C 31 0A 57 -2,-0.5 -40,-0.2 -40,-0.2 3,-0.1 -0.670 30.0 168.9 -81.2 122.5 -4.1 33.2 26.1 72 72 A V E + 0 0 74 -42,-2.4 2,-0.3 -2,-0.5 -41,-0.2 0.629 63.6 18.1-108.8 -18.5 -1.4 35.1 24.1 73 73 A E E -C 30 0A 72 -43,-1.5 -43,-2.2 2,-0.0 2,-0.4 -0.967 56.7-168.2-156.5 138.1 1.8 33.9 25.8 74 74 A I E -C 29 0A 34 -2,-0.3 -45,-0.2 -45,-0.2 -13,-0.1 -0.987 18.6-136.3-133.0 124.7 2.9 31.1 28.2 75 75 A S E S+C 28 0A 53 -47,-2.6 -47,-3.7 -2,-0.4 2,-0.1 -0.988 91.1 24.0-134.4 125.9 6.1 30.8 30.1 76 76 A P S S- 0 0 44 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.564 75.3-172.5 -78.8 159.6 7.6 28.4 30.2 77 77 A R S S+ 0 0 140 1,-0.2 -16,-3.5 -2,-0.1 2,-0.4 0.818 73.8 31.8 -81.9 -33.9 6.2 27.0 27.0 78 78 A V E - F 0 60B 82 -18,-0.2 2,-0.4 -31,-0.0 -18,-0.2 -0.968 67.3-164.0-128.5 143.1 7.8 23.6 27.5 79 79 A V E - F 0 59B 9 -20,-2.6 -20,-2.5 -2,-0.4 2,-0.5 -0.986 13.9-140.0-129.6 135.8 8.7 21.6 30.7 80 80 A T E + F 0 58B 64 -2,-0.4 2,-0.3 -22,-0.2 -22,-0.2 -0.810 29.5 175.1 -95.1 127.1 11.0 18.7 31.2 81 81 A L E - F 0 57B 1 -24,-2.9 -24,-2.5 -2,-0.5 2,-0.4 -0.942 24.5-136.5-132.7 153.4 9.7 16.0 33.6 82 82 A Q E - F 0 56B 83 -2,-0.3 -61,-2.8 -26,-0.2 -60,-0.7 -0.926 16.4-163.5-112.3 134.5 10.8 12.6 34.7 83 83 A L E -EF 20 55B 5 -28,-2.9 -28,-3.3 -2,-0.4 2,-0.4 -0.933 3.4-168.5-117.0 138.8 8.4 9.6 35.1 84 84 A E E -E 19 0B 94 -65,-2.2 -65,-3.1 -2,-0.4 2,-0.1 -0.994 22.4-123.0-129.3 134.3 9.1 6.5 37.0 85 85 A H E E 18 0B 121 -2,-0.4 -67,-0.3 -67,-0.3 -68,-0.1 -0.456 360.0 360.0 -70.1 145.5 7.1 3.2 37.0 86 86 A H 0 0 146 -69,-3.7 -1,-0.1 -70,-0.1 -70,-0.0 -0.446 360.0 360.0 -66.7 360.0 5.9 2.1 40.4