==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-MAR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 12-OCT-12 2LZZ . COMPND 2 MOLECULE: CYTOCHROME C, 3 HEME-BINDING SITES; . SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; . AUTHOR J.M.DANTAS,L.MORGADO,D.L.TURNER,C.A.SALGUEIRO . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6283.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 54.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 18.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 135 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 176.1 -10.9 10.9 -2.5 2 2 A D + 0 0 67 2,-0.1 15,-0.2 14,-0.1 13,-0.1 0.859 360.0 110.0 -40.1 -45.2 -8.9 8.2 -4.1 3 3 A D - 0 0 62 1,-0.1 2,-0.9 13,-0.1 11,-0.1 -0.080 61.3-155.8 -38.1 117.2 -6.8 8.2 -1.0 4 4 A I - 0 0 83 11,-1.6 11,-0.4 9,-0.1 2,-0.3 -0.803 5.6-156.8-106.6 89.5 -7.7 4.9 0.7 5 5 A V - 0 0 67 -2,-0.9 9,-0.2 9,-0.2 2,-0.1 -0.508 12.5-157.3 -68.5 125.1 -7.0 5.4 4.4 6 6 A L - 0 0 67 7,-0.5 2,-0.4 -2,-0.3 7,-0.1 -0.176 24.5 -86.2 -91.1-172.5 -6.4 2.1 6.0 7 7 A K + 0 0 195 5,-0.1 2,-0.1 -2,-0.1 -1,-0.1 -0.833 60.6 131.6-102.5 137.1 -6.8 1.1 9.7 8 8 A A > - 0 0 30 -2,-0.4 3,-2.2 4,-0.0 -2,-0.0 -0.437 37.5-161.9 174.8 103.7 -3.9 1.6 12.1 9 9 A K T 3 S+ 0 0 218 1,-0.3 3,-0.1 2,-0.2 -2,-0.0 0.597 95.7 70.0 -67.6 -10.3 -4.1 3.1 15.6 10 10 A N T 3 S- 0 0 137 1,-0.2 -1,-0.3 60,-0.0 61,-0.2 0.448 131.7 -52.1 -84.9 -1.9 -0.4 3.4 15.2 11 11 A G < - 0 0 6 -3,-2.2 -1,-0.2 59,-0.1 60,-0.2 0.211 64.4 -95.4 127.9 110.6 -1.0 6.1 12.5 12 12 A D - 0 0 81 57,-0.2 58,-1.5 58,-0.1 2,-0.6 -0.001 32.4-136.2 -43.3 151.4 -3.2 5.9 9.5 13 13 A V - 0 0 28 56,-0.2 -7,-0.5 -7,-0.1 2,-0.3 -0.791 13.4-151.9-119.7 85.7 -1.4 4.9 6.3 14 14 A K - 0 0 132 -2,-0.6 -9,-0.2 54,-0.3 -11,-0.1 -0.414 10.2-159.5 -60.0 115.5 -2.6 7.2 3.5 15 15 A L - 0 0 45 -11,-0.4 2,-3.9 -2,-0.3 -11,-1.6 -0.876 15.2-139.6-106.6 105.0 -2.2 5.2 0.4 16 16 A P > + 0 0 35 0, 0.0 4,-4.7 0, 0.0 5,-0.4 -0.273 31.2 173.0 -59.0 64.9 -2.1 7.5 -2.7 17 17 A H H > S+ 0 0 40 -2,-3.9 4,-2.3 1,-0.2 5,-0.2 0.905 78.0 48.8 -42.4 -54.5 -4.2 5.0 -4.6 18 18 A K H >> S+ 0 0 123 2,-0.2 4,-0.5 1,-0.2 3,-0.5 0.955 115.9 41.8 -50.4 -59.4 -4.4 7.5 -7.4 19 19 A A H >> S+ 0 0 56 1,-0.3 4,-3.2 2,-0.2 3,-1.9 0.921 116.3 49.1 -54.3 -47.8 -0.7 8.1 -7.4 20 20 A H H 3X S+ 0 0 59 -4,-4.7 4,-1.3 1,-0.3 -1,-0.3 0.753 105.2 60.0 -63.3 -24.3 -0.2 4.4 -7.0 21 21 A Q H << S+ 0 0 64 -4,-2.3 -1,-0.3 -3,-0.5 -2,-0.2 0.574 114.0 36.0 -78.9 -10.4 -2.6 4.0 -9.9 22 22 A K H << S+ 0 0 161 -3,-1.9 -2,-0.2 -4,-0.5 -1,-0.2 0.729 116.6 49.5-107.9 -38.9 -0.2 6.0 -12.0 23 23 A A H < S+ 0 0 74 -4,-3.2 -3,-0.2 1,-0.3 -2,-0.2 0.736 122.6 37.3 -72.6 -23.4 3.1 4.7 -10.6 24 24 A V < + 0 0 27 -4,-1.3 -1,-0.3 -5,-0.3 6,-0.1 -0.591 67.2 173.2-130.2 68.9 1.8 1.2 -11.1 25 25 A P + 0 0 94 0, 0.0 2,-1.3 0, 0.0 -1,-0.1 0.698 66.1 86.0 -47.5 -22.5 -0.2 1.4 -14.3 26 26 A D > - 0 0 87 1,-0.1 2,-2.9 -3,-0.1 3,-0.9 -0.705 65.2-169.1 -88.1 90.7 -0.4 -2.4 -13.9 27 27 A C T 3 S+ 0 0 69 -2,-1.3 -1,-0.1 1,-0.2 -6,-0.0 -0.341 74.0 70.9 -76.6 58.9 -3.5 -2.6 -11.6 28 28 A K T 3 S+ 0 0 142 -2,-2.9 -1,-0.2 -4,-0.1 6,-0.1 0.499 77.2 64.8-137.0 -49.2 -2.6 -6.3 -11.1 29 29 A K S < S+ 0 0 144 -3,-0.9 -2,-0.1 1,-0.3 3,-0.1 0.714 122.0 30.1 -54.3 -19.9 0.5 -6.5 -8.9 30 30 A C S S+ 0 0 67 -4,-0.4 2,-0.6 1,-0.2 -1,-0.3 0.680 123.1 53.2-107.9 -32.4 -1.8 -4.9 -6.3 31 31 A H + 0 0 29 -5,-0.2 -1,-0.2 1,-0.2 7,-0.1 -0.927 62.6 173.0-112.0 111.0 -5.1 -6.4 -7.6 32 32 A E S S+ 0 0 160 -2,-0.6 -1,-0.2 2,-0.3 -2,-0.1 0.884 80.2 23.0 -77.0 -98.9 -5.1 -10.2 -7.9 33 33 A K S S- 0 0 227 1,-0.2 -1,-0.1 6,-0.1 5,-0.1 0.774 135.6 -75.0 -39.1 -30.2 -8.4 -11.6 -8.7 34 34 A G S S- 0 0 22 3,-0.1 -2,-0.3 -6,-0.1 2,-0.2 -0.912 74.4 -26.4 154.5-178.8 -9.0 -8.1 -10.0 35 35 A P S S+ 0 0 115 0, 0.0 2,-0.3 0, 0.0 -4,-0.1 -0.459 103.2 41.9 -62.8 122.2 -9.7 -4.5 -9.1 36 36 A G S S+ 0 0 42 -2,-0.2 -4,-0.1 0, 0.0 -2,-0.1 -0.978 98.4 11.3 141.7-153.0 -11.4 -4.3 -5.7 37 37 A K - 0 0 199 -2,-0.3 2,-0.4 1,-0.1 -3,-0.1 -0.240 66.5-137.0 -59.6 148.5 -11.2 -6.0 -2.4 38 38 A I - 0 0 72 -7,-0.1 2,-0.7 -5,-0.1 -1,-0.1 -0.939 5.7-149.3-115.1 133.1 -8.1 -8.1 -1.8 39 39 A E S S+ 0 0 178 -2,-0.4 -6,-0.1 1,-0.1 3,-0.1 -0.892 82.5 20.5-105.3 110.4 -8.2 -11.5 -0.2 40 40 A G S S+ 0 0 56 -2,-0.7 5,-0.2 1,-0.5 -1,-0.1 -0.237 92.1 110.9 131.4 -43.5 -5.0 -12.4 1.7 41 41 A F + 0 0 73 1,-0.1 -1,-0.5 4,-0.1 2,-0.3 0.013 33.5 122.2 -56.0 168.5 -3.5 -8.9 2.3 42 42 A G S > S- 0 0 33 1,-0.2 4,-1.1 -3,-0.1 -1,-0.1 -0.862 70.6 -36.9 173.6-137.2 -3.3 -7.4 5.8 43 43 A K H >> S+ 0 0 163 -2,-0.3 4,-2.0 2,-0.2 3,-0.9 0.960 129.4 43.6 -79.9 -78.6 -0.7 -6.1 8.1 44 44 A E H 34 S+ 0 0 148 1,-0.3 -1,-0.1 2,-0.2 -3,-0.1 0.818 112.3 60.3 -34.2 -44.3 2.3 -8.3 7.8 45 45 A M H >4 S+ 0 0 59 1,-0.2 3,-3.0 2,-0.2 6,-0.9 0.949 104.1 45.4 -51.0 -58.7 1.6 -8.0 4.0 46 46 A A H << S+ 0 0 23 -4,-1.1 6,-2.5 -3,-0.9 5,-0.4 0.860 111.3 54.3 -53.9 -37.7 2.0 -4.2 4.0 47 47 A H T 3< S- 0 0 92 -4,-2.0 -1,-0.3 4,-0.2 -2,-0.2 0.396 133.1 -2.7 -77.2 3.7 5.1 -4.7 6.1 48 48 A G S X >S+ 0 0 15 -3,-3.0 5,-2.9 -5,-0.3 2,-2.1 -0.534 129.5 13.1-156.1-137.0 6.2 -7.0 3.3 49 49 A K T 3 5S+ 0 0 183 1,-0.2 -3,-0.1 4,-0.2 -2,-0.1 -0.346 122.0 51.5 -58.7 83.4 5.0 -8.4 0.1 50 50 A G T 3 5S- 0 0 27 -2,-2.1 -4,-0.3 -4,-0.3 -1,-0.2 0.070 131.3 -13.3 179.4 -45.5 2.1 -6.0 -0.2 51 51 A C T <>5S+ 0 0 29 -3,-1.7 4,-1.8 -6,-0.9 -5,-0.2 0.448 138.6 39.3-139.7 -55.3 3.4 -2.5 0.3 52 52 A K H >>S+ 0 0 68 -6,-2.5 4,-5.3 -4,-0.4 5,-0.7 0.942 106.3 66.0 -68.1 -49.7 6.9 -2.6 1.6 53 53 A G H >>S+ 0 0 30 -6,-0.4 4,-4.2 2,-0.2 5,-0.6 0.884 118.1 51.9 -73.0 -40.5 7.4 -3.2 -3.6 55 55 A H H X5S+ 0 0 17 -4,-1.8 4,-2.7 2,-0.2 5,-0.5 0.925 119.3 35.1 -60.6 -47.0 8.8 -0.3 -1.6 56 56 A E H <5S+ 0 0 85 -4,-5.3 -1,-0.2 2,-0.2 -2,-0.2 0.748 121.0 50.4 -78.0 -25.8 11.9 -2.3 -0.7 57 57 A E H < S- 0 0 151 1,-0.1 3,-2.1 0, 0.0 4,-0.3 -0.959 80.6-119.7-138.5 154.7 10.2 2.9 7.5 65 65 A C G >> S+ 0 0 107 -2,-0.3 4,-1.4 1,-0.3 3,-1.0 0.901 122.3 44.5 -58.0 -42.4 7.8 3.0 10.4 66 66 A G G 34 S+ 0 0 61 1,-0.2 -1,-0.3 2,-0.2 4,-0.0 0.181 106.5 64.7 -87.1 16.4 8.0 6.8 10.4 67 67 A E G <4 S+ 0 0 79 -3,-2.1 -1,-0.2 -5,-0.0 -2,-0.2 0.339 118.9 16.3-116.4 -0.1 7.6 6.6 6.6 68 68 A C T <4 S+ 0 0 31 -3,-1.0 2,-0.8 -4,-0.3 -54,-0.3 0.506 111.3 68.8-133.4 -62.0 4.1 5.2 6.6 69 69 A H < + 0 0 50 -4,-1.4 2,-0.5 -5,-0.3 -1,-0.3 -0.581 59.8 167.8 -71.9 108.7 2.5 5.6 10.0 70 70 A K 0 0 136 -58,-1.5 -58,-0.1 -2,-0.8 -59,-0.1 -0.920 360.0 360.0-129.6 104.8 1.9 9.3 10.3 71 71 A K 0 0 245 -2,-0.5 -1,-0.1 -61,-0.2 -59,-0.1 0.851 360.0 360.0 -61.0 360.0 -0.3 10.4 13.2