==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=16-NOV-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GENE REGULATION 24-OCT-12 2M0C . COMPND 2 MOLECULE: HOMEOBOX PROTEIN ARISTALESS-LIKE 4; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.XU,A.ELETSKY,S.PULAVARTI,D.LEE,H.JANJUA,R.XIAO,T.B.ACTON, . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7445.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 44.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 163 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 95.8 13.2 -0.1 -17.3 2 2 A H - 0 0 165 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.691 360.0 -37.4-153.4 88.8 15.4 0.8 -20.3 3 3 A M S S+ 0 0 156 -2,-0.2 3,-0.2 1,-0.1 2,-0.0 0.786 104.4 150.6 57.0 34.9 15.8 4.7 -20.9 4 4 A S + 0 0 65 1,-0.2 -1,-0.1 2,-0.1 0, 0.0 -0.087 28.9 51.8 -86.7 179.4 12.1 4.8 -20.0 5 5 A N + 0 0 161 1,-0.1 -1,-0.2 -3,-0.1 -2,-0.1 0.814 55.1 145.5 60.6 41.5 9.8 7.5 -18.4 6 6 A K + 0 0 160 -3,-0.2 2,-1.1 2,-0.1 -1,-0.1 0.466 36.8 108.3 -84.4 -4.9 10.7 10.4 -20.8 7 7 A G S S- 0 0 65 1,-0.0 2,-0.6 2,-0.0 -1,-0.0 -0.680 71.9-138.7 -75.4 98.3 7.1 11.7 -20.6 8 8 A K - 0 0 166 -2,-1.1 2,-0.6 1,-0.1 -2,-0.1 -0.477 13.7-147.2 -66.4 107.2 7.6 14.9 -18.5 9 9 A K + 0 0 124 -2,-0.6 -1,-0.1 1,-0.2 -2,-0.0 -0.690 26.6 171.9 -80.6 114.7 4.7 15.2 -16.0 10 10 A R + 0 0 205 -2,-0.6 2,-1.0 1,-0.1 -1,-0.2 0.674 61.9 90.8 -86.4 -25.8 3.6 18.8 -15.2 11 11 A R S S- 0 0 216 1,-0.1 -1,-0.1 2,-0.1 -2,-0.0 -0.667 104.2 -29.5 -76.4 97.7 0.6 17.4 -13.2 12 12 A N - 0 0 103 -2,-1.0 3,-0.2 2,-0.0 -1,-0.1 0.769 53.9-129.5 67.4 130.7 1.9 17.0 -9.6 13 13 A R S S+ 0 0 241 1,-0.3 2,-0.5 -3,-0.1 -4,-0.1 0.995 96.3 22.5 -67.0 -68.0 5.6 16.3 -8.4 14 14 A T - 0 0 77 1,-0.1 -1,-0.3 2,-0.1 -2,-0.0 -0.932 65.9-153.9-109.9 118.4 4.9 13.4 -6.0 15 15 A T S S+ 0 0 84 -2,-0.5 2,-0.2 -3,-0.2 -1,-0.1 0.783 84.0 49.1 -57.1 -30.3 1.7 11.3 -6.6 16 16 A F S S- 0 0 38 32,-0.0 2,-0.2 4,-0.0 -2,-0.1 -0.582 75.2-144.1-106.2 167.2 1.8 10.4 -2.8 17 17 A T > - 0 0 80 -2,-0.2 4,-2.4 1,-0.0 5,-0.2 -0.729 36.6 -89.2-122.7 178.1 2.3 12.5 0.5 18 18 A S H > S+ 0 0 99 -2,-0.2 4,-1.5 1,-0.2 -1,-0.0 0.919 124.7 45.0 -53.6 -54.0 4.1 11.9 3.9 19 19 A Y H > S+ 0 0 128 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.867 112.8 51.5 -61.0 -42.4 1.0 10.2 5.7 20 20 A Q H > S+ 0 0 20 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.945 111.3 46.7 -60.6 -47.7 0.2 8.0 2.6 21 21 A L H X S+ 0 0 60 -4,-2.4 4,-1.8 2,-0.2 -1,-0.2 0.735 108.5 58.2 -68.5 -25.6 3.8 6.7 2.4 22 22 A E H X S+ 0 0 105 -4,-1.5 4,-2.2 -5,-0.2 -2,-0.2 0.980 113.0 37.4 -60.3 -57.3 3.7 6.1 6.3 23 23 A E H X S+ 0 0 17 -4,-2.1 4,-2.0 2,-0.2 -2,-0.2 0.889 117.0 51.6 -63.8 -45.1 0.7 3.8 5.9 24 24 A L H X S+ 0 0 0 -4,-2.6 4,-2.1 1,-0.2 -1,-0.2 0.915 113.8 43.5 -59.4 -49.2 1.9 2.1 2.7 25 25 A E H X S+ 0 0 59 -4,-1.8 4,-2.5 2,-0.2 5,-0.2 0.870 110.4 56.1 -64.7 -40.7 5.4 1.3 4.2 26 26 A K H X S+ 0 0 96 -4,-2.2 4,-1.1 2,-0.2 -2,-0.2 0.901 112.2 42.1 -60.7 -42.3 3.9 0.1 7.5 27 27 A V H X S+ 0 0 36 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.919 115.3 52.0 -65.9 -43.0 1.7 -2.5 5.6 28 28 A F H < S+ 0 0 2 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.830 110.9 45.6 -63.1 -38.7 4.8 -3.3 3.3 29 29 A Q H < S+ 0 0 113 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.709 117.4 43.6 -83.1 -23.8 7.2 -4.0 6.3 30 30 A K H < S+ 0 0 182 -4,-1.1 2,-0.2 1,-0.3 -2,-0.2 0.741 138.8 1.0 -85.9 -30.6 4.6 -6.1 8.2 31 31 A T < - 0 0 40 -4,-2.2 -1,-0.3 -5,-0.1 -2,-0.1 -0.852 53.3-156.5-159.9 122.6 3.6 -8.0 4.9 32 32 A H S S+ 0 0 51 -2,-0.2 -4,-0.1 1,-0.2 29,-0.1 0.582 91.8 59.0 -73.8 -7.8 5.1 -7.5 1.3 33 33 A Y S S- 0 0 170 -6,-0.2 2,-0.5 -5,-0.1 -1,-0.2 -0.886 71.8-164.1-127.6 94.6 1.7 -8.9 0.0 34 34 A P - 0 0 8 0, 0.0 5,-0.0 0, 0.0 -6,-0.0 -0.719 19.6-137.1 -77.8 122.6 -1.6 -7.0 1.0 35 35 A D > - 0 0 101 -2,-0.5 4,-2.0 1,-0.1 5,-0.2 -0.194 33.6 -87.9 -70.5 172.9 -4.7 -9.2 0.5 36 36 A V H > S+ 0 0 118 1,-0.2 4,-1.3 2,-0.2 -1,-0.1 0.834 130.8 44.5 -53.8 -39.1 -8.1 -7.9 -1.1 37 37 A Y H > S+ 0 0 139 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.895 111.4 52.4 -73.3 -42.0 -9.4 -6.8 2.3 38 38 A A H > S+ 0 0 25 1,-0.2 4,-1.8 2,-0.2 -2,-0.2 0.779 105.8 57.0 -63.6 -30.0 -6.0 -5.2 3.3 39 39 A R H X S+ 0 0 47 -4,-2.0 4,-2.0 2,-0.2 -1,-0.2 0.920 110.0 43.4 -62.5 -47.7 -6.1 -3.2 -0.0 40 40 A E H X S+ 0 0 104 -4,-1.3 4,-2.2 2,-0.2 -2,-0.2 0.897 114.0 49.2 -67.5 -46.1 -9.5 -1.7 0.9 41 41 A Q H X S+ 0 0 81 -4,-2.3 4,-1.1 1,-0.2 -1,-0.2 0.896 115.1 45.1 -61.1 -42.8 -8.5 -0.9 4.6 42 42 A L H X S+ 0 0 4 -4,-1.8 4,-2.2 -5,-0.2 6,-0.3 0.880 110.9 55.7 -66.9 -39.4 -5.3 0.8 3.4 43 43 A A H X>S+ 0 0 13 -4,-2.0 4,-1.2 1,-0.2 5,-0.8 0.929 106.8 46.7 -60.9 -52.3 -7.2 2.7 0.6 44 44 A M H <5S+ 0 0 143 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.814 116.1 46.9 -62.0 -33.5 -9.8 4.4 3.0 45 45 A R H <5S+ 0 0 145 -4,-1.1 -1,-0.2 -5,-0.2 -2,-0.2 0.872 116.6 41.8 -75.7 -40.2 -7.0 5.5 5.4 46 46 A T H <5S- 0 0 3 -4,-2.2 -2,-0.2 2,-0.2 -1,-0.2 0.541 103.1-126.0 -85.3 -11.2 -4.5 6.8 2.7 47 47 A D T <5S+ 0 0 144 -4,-1.2 2,-0.2 1,-0.3 -3,-0.2 0.523 74.8 119.3 71.4 9.5 -7.4 8.6 0.6 48 48 A L < - 0 0 23 -5,-0.8 -1,-0.3 -6,-0.3 2,-0.2 -0.604 64.8-117.1 -98.0 159.4 -6.0 6.6 -2.4 49 49 A T >> - 0 0 84 -2,-0.2 4,-1.4 -3,-0.1 3,-0.7 -0.507 32.1-103.4 -87.9 168.3 -7.9 4.0 -4.6 50 50 A E H 3> S+ 0 0 73 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.849 121.9 62.6 -59.3 -35.6 -7.0 0.2 -4.9 51 51 A A H 3> S+ 0 0 37 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.867 104.3 46.3 -55.6 -41.5 -5.5 1.1 -8.3 52 52 A R H <> S+ 0 0 132 -3,-0.7 4,-1.9 2,-0.2 -1,-0.2 0.793 109.2 54.8 -74.7 -30.2 -2.9 3.4 -6.6 53 53 A V H X S+ 0 0 0 -4,-1.4 4,-1.9 2,-0.2 -2,-0.2 0.829 108.0 51.3 -68.5 -34.2 -2.2 0.7 -4.0 54 54 A Q H X S+ 0 0 77 -4,-2.0 4,-2.4 2,-0.2 5,-0.3 0.968 110.1 47.6 -62.5 -54.3 -1.4 -1.7 -7.0 55 55 A V H X S+ 0 0 85 -4,-1.9 4,-1.5 1,-0.2 5,-0.2 0.879 114.4 46.7 -57.8 -44.0 1.0 0.8 -8.6 56 56 A W H X S+ 0 0 23 -4,-1.9 4,-2.6 2,-0.2 -1,-0.2 0.976 116.3 41.1 -64.0 -58.5 2.9 1.5 -5.3 57 57 A F H X S+ 0 0 3 -4,-1.9 4,-2.3 1,-0.2 -2,-0.2 0.840 115.5 49.8 -63.6 -38.4 3.4 -2.2 -4.1 58 58 A Q H X S+ 0 0 135 -4,-2.4 4,-0.7 -5,-0.2 -1,-0.2 0.879 117.5 40.7 -68.7 -38.3 4.2 -3.6 -7.7 59 59 A N H X S+ 0 0 90 -4,-1.5 4,-1.2 -5,-0.3 -2,-0.2 0.884 116.2 51.1 -72.8 -39.2 6.9 -0.9 -8.2 60 60 A R H X S+ 0 0 70 -4,-2.6 4,-1.8 1,-0.2 3,-0.2 0.887 109.0 48.6 -69.3 -44.0 8.1 -1.2 -4.5 61 61 A R H X S+ 0 0 86 -4,-2.3 4,-1.2 1,-0.2 -1,-0.2 0.729 102.7 65.7 -67.4 -24.5 8.6 -5.0 -4.6 62 62 A A H < S+ 0 0 38 -4,-0.7 4,-0.5 2,-0.2 -2,-0.2 0.913 107.4 38.6 -64.7 -44.9 10.5 -4.6 -7.9 63 63 A K H >< S+ 0 0 113 -4,-1.2 3,-1.2 -3,-0.2 -2,-0.2 0.903 113.0 58.0 -65.4 -43.0 13.4 -2.7 -6.1 64 64 A W H 3< S+ 0 0 114 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.719 93.3 69.2 -60.4 -26.2 12.9 -5.1 -3.1 65 65 A R T 3< S+ 0 0 188 -4,-1.2 2,-1.4 -3,-0.1 -1,-0.2 0.828 81.0 81.5 -61.7 -36.7 13.7 -8.0 -5.6 66 66 A K < - 0 0 137 -3,-1.2 2,-0.8 -4,-0.5 -1,-0.1 -0.621 68.6-164.1 -78.1 90.0 17.4 -6.9 -5.9 67 67 A R + 0 0 226 -2,-1.4 -3,-0.1 1,-0.2 -2,-0.1 -0.693 14.7 174.1 -72.5 105.3 19.1 -8.4 -2.8 68 68 A E - 0 0 138 -2,-0.8 -1,-0.2 7,-0.7 7,-0.1 0.933 19.8-161.2 -86.1 -50.6 22.3 -6.3 -2.7 69 69 A R + 0 0 188 2,-0.1 6,-0.1 6,-0.1 3,-0.1 0.884 36.2 149.4 61.4 43.6 24.1 -7.3 0.6 70 70 A F - 0 0 188 4,-0.2 2,-0.3 1,-0.2 5,-0.1 0.832 59.9 -33.0 -76.1 -36.6 26.2 -4.1 0.2 71 71 A G - 0 0 28 3,-0.2 -1,-0.2 2,-0.1 -2,-0.1 -0.957 67.9 -75.3-169.4-173.4 26.7 -3.5 4.0 72 72 A Q S S+ 0 0 181 -2,-0.3 2,-1.2 1,-0.2 3,-0.2 0.627 105.5 80.8 -78.1 -18.1 25.5 -3.7 7.7 73 73 A M S S- 0 0 185 1,-0.3 -1,-0.2 0, 0.0 -3,-0.1 -0.749 127.0 -35.6 -90.0 86.1 23.0 -0.7 7.2 74 74 A Q 0 0 171 -2,-1.2 -1,-0.3 1,-0.1 -4,-0.2 0.942 360.0 360.0 56.7 101.5 20.1 -2.7 5.5 75 75 A Q 0 0 110 -3,-0.2 -7,-0.7 -6,-0.1 -3,-0.1 -0.110 360.0 360.0 -45.8 360.0 21.8 -5.5 3.2