==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JUL-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION REGULATOR 04-MAR-10 3M1E . COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM; . SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP. ADP1; . AUTHOR A.ALANAZI,C.MOMANY,E.L.NEIDLE . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5941.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 75.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 55 63.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 90 0, 0.0 2,-0.2 0, 0.0 38,-0.0 0.000 360.0 360.0 360.0 137.6 -3.3 -15.2 11.7 2 2 A E >> - 0 0 120 1,-0.1 4,-1.1 0, 0.0 3,-0.6 -0.767 360.0-103.5-124.3 169.5 -0.7 -15.2 14.5 3 3 A L H 3> S+ 0 0 59 -2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.823 117.2 66.3 -60.6 -33.3 2.4 -13.2 15.5 4 4 A R H 3> S+ 0 0 105 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.893 97.9 52.9 -52.2 -46.1 4.6 -16.1 14.1 5 5 A H H <> S+ 0 0 12 -3,-0.6 4,-2.4 2,-0.2 -1,-0.2 0.903 111.1 46.1 -58.3 -44.6 3.3 -15.3 10.6 6 6 A L H X S+ 0 0 7 -4,-1.1 4,-2.7 2,-0.2 -2,-0.2 0.919 112.9 49.0 -65.8 -45.4 4.3 -11.7 10.9 7 7 A R H X S+ 0 0 104 -4,-2.7 4,-1.7 2,-0.2 -2,-0.2 0.891 113.9 46.6 -61.2 -41.9 7.7 -12.4 12.3 8 8 A Y H X S+ 0 0 40 -4,-2.6 4,-1.9 -5,-0.2 -2,-0.2 0.927 113.5 48.6 -65.2 -46.5 8.4 -15.0 9.5 9 9 A F H X S+ 0 0 0 -4,-2.4 4,-2.5 -5,-0.2 -2,-0.2 0.916 109.5 51.2 -61.4 -47.6 7.1 -12.6 6.8 10 10 A V H X S+ 0 0 14 -4,-2.7 4,-2.5 1,-0.2 -1,-0.2 0.906 109.6 51.0 -57.6 -44.6 9.2 -9.7 8.0 11 11 A A H X S+ 0 0 7 -4,-1.7 4,-2.4 -5,-0.2 6,-0.3 0.886 110.4 48.9 -60.8 -42.1 12.4 -11.9 8.1 12 12 A V H X>S+ 0 0 0 -4,-1.9 4,-1.6 2,-0.2 5,-0.8 0.925 112.5 47.7 -63.8 -45.6 11.7 -13.0 4.5 13 13 A V H <5S+ 0 0 22 -4,-2.5 -2,-0.2 2,-0.2 -1,-0.2 0.921 116.2 43.9 -60.6 -45.4 11.2 -9.5 3.2 14 14 A E H <5S+ 0 0 84 -4,-2.5 -2,-0.2 1,-0.2 -1,-0.2 0.866 119.9 39.4 -72.9 -38.4 14.3 -8.2 5.0 15 15 A E H <5S- 0 0 67 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.636 95.2-140.9 -83.7 -15.5 16.6 -11.0 4.0 16 16 A Q T <5S+ 0 0 107 -4,-1.6 39,-1.6 -5,-0.2 2,-0.3 0.784 74.5 85.8 57.2 31.1 15.1 -11.3 0.5 17 17 A S >< - 0 0 28 -5,-0.8 4,-1.4 -6,-0.3 -2,-0.2 -0.962 69.5-147.8-161.2 134.8 15.4 -15.0 0.9 18 18 A F H > S+ 0 0 32 -2,-0.3 4,-2.0 2,-0.2 -1,-0.1 0.925 105.5 46.2 -69.7 -45.9 13.4 -17.9 2.4 19 19 A T H > S+ 0 0 75 2,-0.2 4,-2.2 1,-0.2 5,-0.1 0.928 113.5 47.5 -62.5 -48.2 16.5 -19.8 3.4 20 20 A K H > S+ 0 0 125 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.838 111.9 50.9 -65.1 -34.7 18.3 -16.8 4.9 21 21 A A H X S+ 0 0 0 -4,-1.4 4,-1.8 2,-0.2 -1,-0.2 0.884 108.7 52.2 -66.4 -40.0 15.2 -15.8 6.9 22 22 A A H <>S+ 0 0 1 -4,-2.0 5,-2.5 1,-0.2 4,-0.3 0.904 107.5 52.1 -62.2 -42.9 15.0 -19.4 8.2 23 23 A D H ><5S+ 0 0 114 -4,-2.2 3,-0.8 1,-0.2 -1,-0.2 0.895 110.5 48.4 -57.0 -44.3 18.6 -19.2 9.3 24 24 A K H 3<5S+ 0 0 123 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.813 113.1 46.2 -68.8 -33.1 17.9 -16.0 11.2 25 25 A L T 3<5S- 0 0 53 -4,-1.8 -1,-0.2 2,-0.2 -2,-0.2 0.339 111.5-120.0 -92.6 5.0 14.7 -17.4 12.9 26 26 A C T < 5S+ 0 0 120 -3,-0.8 2,-0.3 -4,-0.3 -3,-0.2 0.842 74.7 113.0 58.1 40.0 16.6 -20.6 13.8 27 27 A I S - 0 0 59 -2,-0.3 4,-1.2 1,-0.1 -3,-0.0 -0.456 34.7-122.7 -73.4 150.4 14.3 -25.1 8.8 29 29 A Q H > S+ 0 0 73 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.901 102.2 60.4 -63.3 -45.7 13.4 -23.5 5.4 30 30 A P H > S+ 0 0 61 0, 0.0 4,-2.1 0, 0.0 -1,-0.2 0.914 106.8 43.7 -54.7 -50.0 10.5 -25.8 4.4 31 31 A P H > S+ 0 0 46 0, 0.0 4,-2.2 0, 0.0 -2,-0.2 0.859 112.7 54.9 -63.0 -32.8 8.2 -25.0 7.4 32 32 A L H X S+ 0 0 0 -4,-1.2 4,-1.9 2,-0.2 5,-0.2 0.941 108.9 46.6 -61.2 -49.5 9.0 -21.3 7.1 33 33 A S H X S+ 0 0 15 -4,-2.5 4,-2.1 1,-0.2 -1,-0.2 0.894 112.0 51.5 -59.7 -42.0 7.9 -21.4 3.4 34 34 A R H X S+ 0 0 136 -4,-2.1 4,-2.7 -5,-0.2 -1,-0.2 0.890 108.2 52.0 -62.7 -40.9 4.7 -23.3 4.3 35 35 A Q H X S+ 0 0 40 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.873 109.5 48.4 -64.5 -39.9 3.9 -20.7 7.1 36 36 A I H X S+ 0 0 2 -4,-1.9 4,-2.4 2,-0.2 -1,-0.2 0.895 111.8 49.9 -67.6 -39.9 4.2 -17.8 4.7 37 37 A Q H X S+ 0 0 61 -4,-2.1 4,-2.6 2,-0.2 -2,-0.2 0.925 109.3 52.4 -61.0 -45.0 2.0 -19.7 2.1 38 38 A N H X S+ 0 0 66 -4,-2.7 4,-2.2 1,-0.2 -2,-0.2 0.870 109.0 50.4 -56.6 -41.2 -0.5 -20.3 5.0 39 39 A L H X S+ 0 0 0 -4,-2.0 4,-2.1 2,-0.2 -2,-0.2 0.931 112.4 45.2 -62.4 -48.9 -0.5 -16.5 5.7 40 40 A E H X>S+ 0 0 24 -4,-2.4 5,-1.9 1,-0.2 4,-1.4 0.868 113.9 50.2 -63.3 -39.0 -1.1 -15.6 2.1 41 41 A E H <5S+ 0 0 132 -4,-2.6 -1,-0.2 2,-0.2 -2,-0.2 0.873 109.8 50.0 -68.4 -39.9 -3.8 -18.2 1.8 42 42 A E H <5S+ 0 0 114 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.918 115.6 42.3 -63.8 -44.8 -5.6 -17.0 4.9 43 43 A L H <5S- 0 0 63 -4,-2.1 -1,-0.2 2,-0.2 -2,-0.2 0.709 104.6-130.4 -74.7 -22.9 -5.6 -13.4 3.8 44 44 A G T <5S+ 0 0 64 -4,-1.4 2,-0.3 1,-0.3 -3,-0.2 0.827 71.7 101.8 72.6 33.9 -6.6 -14.4 0.2 45 45 A I S - 0 0 85 7,-2.7 3,-2.0 -2,-0.4 7,-0.4 -0.599 46.8-119.4 -67.7 115.7 5.9 -11.8 -6.1 50 50 A R T 3 S+ 0 0 169 -2,-0.6 -1,-0.1 1,-0.3 -4,-0.0 -0.455 93.8 8.6 -67.5 118.8 5.6 -15.6 -6.9 51 51 A G T 3 S+ 0 0 64 -2,-0.3 -1,-0.3 1,-0.3 2,-0.1 0.377 89.3 152.7 94.0 -1.5 9.0 -16.7 -8.4 52 52 A S < - 0 0 22 -3,-2.0 -1,-0.3 4,-0.2 4,-0.0 -0.402 37.7-135.3 -67.8 132.5 10.8 -13.5 -7.7 53 53 A R S S+ 0 0 198 1,-0.2 2,-0.2 -2,-0.1 -36,-0.1 -0.961 96.2 26.9-134.5 114.1 14.6 -13.8 -7.2 54 54 A P S S- 0 0 82 0, 0.0 -37,-0.2 0, 0.0 -1,-0.2 0.608 120.1 -96.4 -69.4 164.8 15.6 -12.2 -4.9 55 55 A V - 0 0 8 -39,-1.6 2,-0.4 -2,-0.2 -2,-0.1 -0.261 50.7-175.8 -55.8 124.5 12.4 -12.3 -3.0 56 56 A K - 0 0 128 -7,-0.4 -7,-2.7 -4,-0.0 -4,-0.2 -0.963 20.3-122.7-127.1 142.0 10.4 -9.1 -3.6 57 57 A T B -A 48 0A 22 -2,-0.4 -9,-0.3 -9,-0.2 -10,-0.1 -0.443 20.5-122.9 -76.2 152.9 7.1 -8.0 -2.1 58 58 A T > - 0 0 12 -11,-1.9 4,-2.7 -2,-0.1 5,-0.2 -0.435 40.3 -98.5 -76.1 166.6 3.9 -7.1 -4.1 59 59 A P H > S+ 0 0 105 0, 0.0 4,-1.9 0, 0.0 5,-0.1 0.920 130.6 43.5 -55.8 -43.8 2.6 -3.5 -3.5 60 60 A E H > S+ 0 0 94 -14,-0.2 4,-2.5 1,-0.2 5,-0.1 0.811 111.7 56.8 -68.1 -30.6 0.1 -4.9 -1.0 61 61 A G H > S+ 0 0 0 -15,-0.3 4,-2.5 2,-0.2 -1,-0.2 0.891 107.4 45.8 -65.7 -43.2 2.9 -7.1 0.4 62 62 A H H X S+ 0 0 79 -4,-2.7 4,-2.5 2,-0.2 -2,-0.2 0.884 112.1 52.0 -67.9 -39.3 5.1 -4.1 1.1 63 63 A F H X S+ 0 0 125 -4,-1.9 4,-1.7 -5,-0.2 -2,-0.2 0.949 112.1 45.8 -56.6 -52.1 2.1 -2.2 2.7 64 64 A F H X S+ 0 0 40 -4,-2.5 4,-2.4 1,-0.2 -2,-0.2 0.901 111.1 54.4 -56.9 -45.2 1.5 -5.2 4.9 65 65 A Y H X S+ 0 0 33 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.913 105.6 51.3 -55.1 -49.3 5.2 -5.4 5.7 66 66 A Q H X S+ 0 0 106 -4,-2.5 4,-1.1 1,-0.2 -1,-0.2 0.862 115.1 42.1 -62.1 -36.8 5.4 -1.8 6.9 67 67 A Y H X S+ 0 0 140 -4,-1.7 4,-2.3 2,-0.2 -1,-0.2 0.814 109.6 58.9 -79.8 -29.0 2.5 -2.2 9.2 68 68 A A H X S+ 0 0 5 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.904 105.5 48.5 -63.3 -43.1 3.7 -5.6 10.4 69 69 A I H X S+ 0 0 69 -4,-2.2 4,-1.8 2,-0.2 -1,-0.2 0.879 111.3 50.8 -66.4 -36.4 7.0 -4.1 11.6 70 70 A K H X S+ 0 0 122 -4,-1.1 4,-2.0 -5,-0.2 -2,-0.2 0.922 112.4 46.8 -62.6 -46.1 5.1 -1.4 13.5 71 71 A L H X S+ 0 0 84 -4,-2.3 4,-2.2 2,-0.2 -2,-0.2 0.913 111.1 49.9 -65.4 -44.0 2.8 -4.0 15.1 72 72 A L H X S+ 0 0 19 -4,-2.6 4,-2.0 1,-0.2 -1,-0.2 0.844 109.9 52.2 -64.1 -34.6 5.7 -6.2 16.2 73 73 A S H X S+ 0 0 55 -4,-1.8 4,-2.2 2,-0.2 -1,-0.2 0.904 109.3 49.9 -64.2 -43.5 7.5 -3.2 17.7 74 74 A N H X S+ 0 0 61 -4,-2.0 4,-2.3 2,-0.2 -2,-0.2 0.862 108.4 52.9 -63.3 -38.8 4.3 -2.4 19.6 75 75 A V H X S+ 0 0 22 -4,-2.2 4,-2.5 2,-0.2 5,-0.2 0.941 109.8 48.6 -58.6 -49.6 4.2 -6.0 20.9 76 76 A D H X S+ 0 0 101 -4,-2.0 4,-2.3 1,-0.2 -2,-0.2 0.877 112.2 48.2 -59.6 -41.9 7.8 -5.8 22.1 77 77 A Q H X S+ 0 0 126 -4,-2.2 4,-2.3 2,-0.2 -1,-0.2 0.889 112.1 49.8 -65.4 -41.4 7.0 -2.5 23.9 78 78 A M H X S+ 0 0 119 -4,-2.3 4,-2.2 2,-0.2 -2,-0.2 0.915 114.1 43.3 -63.0 -47.9 3.9 -3.9 25.5 79 79 A V H X S+ 0 0 65 -4,-2.5 4,-2.1 2,-0.2 5,-0.2 0.920 114.6 50.4 -66.6 -45.7 5.6 -7.0 26.8 80 80 A S H X S+ 0 0 51 -4,-2.3 4,-1.6 -5,-0.2 -2,-0.2 0.908 114.2 43.5 -58.3 -47.3 8.7 -5.1 28.0 81 81 A M H X S+ 0 0 84 -4,-2.3 4,-1.3 2,-0.2 -1,-0.2 0.900 111.9 52.0 -68.9 -42.2 6.7 -2.5 29.9 82 82 A T H X S+ 0 0 85 -4,-2.2 4,-1.4 1,-0.2 3,-0.3 0.895 111.1 48.6 -62.5 -40.7 4.3 -5.0 31.5 83 83 A K H X S+ 0 0 148 -4,-2.1 4,-2.6 1,-0.2 -1,-0.2 0.875 105.9 57.7 -63.0 -40.3 7.2 -7.1 32.8 84 84 A R H < S+ 0 0 150 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.788 103.6 54.9 -63.2 -29.9 8.9 -3.9 34.2 85 85 A I H < S+ 0 0 132 -4,-1.3 -1,-0.2 -3,-0.3 -2,-0.2 0.945 119.0 29.4 -67.4 -51.8 5.7 -3.3 36.3 86 86 A A H < 0 0 86 -4,-1.4 -2,-0.2 1,-0.1 -3,-0.1 0.972 360.0 360.0 -74.1 -57.6 5.7 -6.7 38.0 87 87 A S < 0 0 140 -4,-2.6 -1,-0.1 -5,-0.1 -2,-0.1 -0.251 360.0 360.0 49.0 360.0 9.4 -7.6 38.1