==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 21-JUN-02 1M25 . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.MEGY,G.BERTHO,S.A.KOZIN,G.COADOU,P.DEBEY,G.H.HOA,J.- . 26 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2699.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 19.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 34.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 99 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -87.8 3.4 9.8 13.7 2 2 A N >> - 0 0 98 1,-0.1 4,-4.4 4,-0.0 3,-1.1 -0.635 360.0-131.3 -82.5 133.2 -0.3 9.8 13.0 3 3 A D H 3> S+ 0 0 121 -2,-0.3 4,-2.0 1,-0.3 -1,-0.1 0.549 108.7 58.8 -59.1 -6.9 -1.9 6.3 12.7 4 4 A Y H 3> S+ 0 0 155 2,-0.2 4,-0.6 3,-0.2 -1,-0.3 0.821 114.9 33.0 -90.0 -35.8 -3.5 7.6 9.5 5 5 A E H <> S+ 0 0 102 -3,-1.1 4,-3.0 2,-0.2 -2,-0.2 0.853 123.9 49.2 -80.9 -40.0 -0.2 8.3 7.9 6 6 A D H X S+ 0 0 78 -4,-4.4 4,-3.6 2,-0.2 -3,-0.2 0.976 121.6 32.3 -59.7 -58.2 1.0 5.4 9.8 7 7 A R H X S+ 0 0 155 -4,-2.0 4,-1.8 2,-0.3 -2,-0.2 0.762 113.8 65.9 -72.5 -22.3 -1.9 3.3 8.6 8 8 A Y H < S+ 0 0 119 -4,-0.6 -1,-0.2 -6,-0.3 -2,-0.2 0.950 115.8 28.1 -55.5 -52.9 -1.7 5.3 5.4 9 9 A Y H >< S+ 0 0 87 -4,-3.0 3,-4.0 1,-0.2 -2,-0.3 0.823 108.5 66.3 -81.2 -37.0 1.5 3.8 4.9 10 10 A R H >< S+ 0 0 103 -4,-3.6 3,-1.5 1,-0.3 -3,-0.2 0.865 91.2 72.3 -56.2 -23.8 1.0 0.6 6.7 11 11 A E G >< + 0 0 111 -4,-1.8 3,-3.3 1,-0.3 4,-0.4 0.445 64.9 102.8 -65.3 2.5 -1.4 0.3 3.8 12 12 A N G X> + 0 0 20 -3,-4.0 3,-0.8 1,-0.3 4,-0.7 0.640 62.4 77.0 -63.7 -8.9 1.8 -0.1 1.9 13 13 A M G <4 S+ 0 0 96 -3,-1.5 -1,-0.3 1,-0.3 -2,-0.2 0.740 87.0 56.7 -72.4 -17.2 0.8 -3.7 1.9 14 14 A Y G <4 S+ 0 0 106 -3,-3.3 -1,-0.3 1,-0.2 -2,-0.2 0.692 101.6 56.3 -80.0 -18.1 -1.5 -2.5 -0.7 15 15 A R T <4 S+ 0 0 113 -3,-0.8 -2,-0.3 -4,-0.4 3,-0.2 0.659 104.2 64.1 -81.3 -22.1 1.6 -1.5 -2.4 16 16 A Y S < S- 0 0 105 -4,-0.7 2,-3.6 1,-0.2 7,-0.1 0.523 123.8 -11.6 -76.0-135.0 2.8 -5.1 -2.0 17 17 A P S S- 0 0 119 0, 0.0 2,-0.2 0, 0.0 -1,-0.2 -0.310 81.6-159.3 -68.5 71.8 0.9 -7.8 -3.9 18 18 A N > - 0 0 7 -2,-3.6 2,-6.0 -3,-0.2 4,-1.2 -0.389 31.9-104.0 -59.3 116.1 -1.8 -5.5 -4.7 19 19 A Q T 4 S- 0 0 138 1,-0.3 -1,-0.2 -2,-0.2 -5,-0.0 0.216 105.7 -8.8 -28.0 13.0 -4.8 -7.7 -5.5 20 20 A V T 4 S+ 0 0 65 -2,-6.0 -1,-0.3 0, 0.0 6,-0.1 0.149 107.2 97.6 174.9 -30.7 -4.4 -7.1 -9.2 21 21 A Y T > - 0 0 58 -3,-0.3 4,-2.0 1,-0.2 5,-0.4 0.614 68.9-153.4 -53.6 -12.5 -1.9 -4.5 -9.6 22 22 A Y T < S- 0 0 157 -4,-1.2 -1,-0.2 1,-0.3 -3,-0.1 0.756 72.6 -69.3 42.0 14.2 0.4 -7.3 -10.1 23 23 A R T 4 S+ 0 0 178 -5,-0.4 -1,-0.3 -7,-0.1 -2,-0.1 -0.414 137.6 80.7 96.7 -48.3 2.4 -4.3 -8.7 24 24 A P T 4 S- 0 0 84 0, 0.0 -2,-0.2 0, 0.0 -3,-0.1 0.838 85.2-144.3 -54.9 -33.3 2.1 -2.0 -11.8 25 25 A V < 0 0 71 -4,-2.0 -4,-0.1 1,-0.2 -3,-0.1 0.589 360.0 360.0 77.8 10.9 -1.4 -1.0 -10.7 26 26 A C 0 0 154 -5,-0.4 -1,-0.2 -6,-0.1 -4,-0.1 0.258 360.0 360.0-159.7 360.0 -2.5 -0.8 -14.3