==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-JAN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 09-JAN-13 2M34 . COMPND 2 MOLECULE: HOMEOBOX PROTEIN GBX-1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.PROUDFOOT,P.SERRANO,M.GERALT,K.WUTHRICH,PARTNERSHIP FOR ST . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6056.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 60.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 49.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 182 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 168.1 2.4 3.9 -15.2 2 2 A A - 0 0 80 2,-0.0 2,-0.0 0, 0.0 0, 0.0 -0.886 360.0-161.1-116.2 86.3 0.8 0.4 -15.6 3 3 A P + 0 0 111 0, 0.0 2,-0.3 0, 0.0 3,-0.0 -0.277 39.5 95.4 -67.3 165.1 -0.9 -0.8 -12.3 4 4 A G S S- 0 0 44 2,-0.0 2,-0.1 -2,-0.0 -2,-0.0 -0.977 79.8 -28.9 154.9-155.1 -1.7 -4.4 -11.5 5 5 A G - 0 0 57 -2,-0.3 2,-0.2 18,-0.0 11,-0.0 -0.327 53.9-171.2 -71.8 171.6 0.1 -7.2 -9.6 6 6 A K + 0 0 117 10,-0.1 2,-0.3 -2,-0.1 13,-0.1 -0.713 11.5 162.3-167.6 124.5 4.0 -7.2 -9.5 7 7 A S + 0 0 90 -2,-0.2 2,-0.1 12,-0.1 -2,-0.0 -0.859 39.2 32.2-144.6 172.3 6.2 -10.0 -8.1 8 8 A R S S+ 0 0 196 -2,-0.3 2,-1.9 1,-0.1 8,-0.2 -0.444 70.1 95.6 63.2-161.0 9.8 -11.3 -8.1 9 9 A R - 0 0 180 1,-0.2 6,-0.1 -2,-0.1 -1,-0.1 -0.476 48.6-171.5 76.6 -61.1 12.7 -8.8 -8.4 10 10 A R S S+ 0 0 179 -2,-1.9 -1,-0.2 4,-0.1 5,-0.2 0.642 70.4 82.3 45.2 20.5 13.3 -8.6 -4.6 11 11 A R S S+ 0 0 216 3,-0.2 2,-0.2 -3,-0.1 -1,-0.1 0.177 75.1 65.1-141.4 14.1 15.7 -5.7 -5.6 12 12 A T S S- 0 0 102 2,-0.3 3,-0.0 0, 0.0 0, 0.0 -0.513 105.3 -61.0-125.3-166.1 13.6 -2.5 -6.1 13 13 A A S S+ 0 0 72 -2,-0.2 2,-0.3 1,-0.1 0, 0.0 0.832 121.9 11.8 -47.3 -41.8 11.5 -0.2 -3.9 14 14 A F S S- 0 0 51 32,-0.0 -2,-0.3 4,-0.0 -3,-0.2 -0.960 73.8-141.8-137.9 149.7 9.1 -3.0 -3.0 15 15 A T > - 0 0 28 -2,-0.3 4,-1.9 -5,-0.2 -6,-0.1 -0.179 39.4 -90.3 -92.2-170.2 9.2 -6.9 -3.4 16 16 A S H > S+ 0 0 39 2,-0.2 4,-1.8 -8,-0.2 -10,-0.1 0.951 129.2 45.0 -58.1 -55.7 6.4 -9.4 -4.3 17 17 A E H > S+ 0 0 109 2,-0.2 4,-2.5 1,-0.2 3,-0.5 0.939 113.6 48.5 -59.4 -54.8 5.7 -9.9 -0.6 18 18 A Q H > S+ 0 0 12 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.925 116.3 43.6 -54.3 -49.7 5.8 -6.2 0.2 19 19 A L H X S+ 0 0 32 -4,-1.9 4,-1.3 1,-0.2 -1,-0.2 0.749 114.6 50.5 -68.7 -26.8 3.4 -5.4 -2.7 20 20 A L H X S+ 0 0 87 -4,-1.8 4,-1.5 -3,-0.5 -2,-0.2 0.920 110.0 46.4 -76.2 -51.4 1.1 -8.4 -2.0 21 21 A E H X S+ 0 0 78 -4,-2.5 4,-2.5 1,-0.2 5,-0.2 0.818 111.1 56.4 -61.9 -31.3 0.5 -7.7 1.7 22 22 A L H X S+ 0 0 0 -4,-1.3 4,-1.7 -5,-0.3 -1,-0.2 0.940 108.2 42.7 -70.0 -52.6 -0.1 -4.0 0.9 23 23 A E H < S+ 0 0 70 -4,-1.3 -1,-0.2 2,-0.2 -2,-0.2 0.770 112.3 60.6 -67.5 -22.0 -2.9 -4.6 -1.6 24 24 A K H >X S+ 0 0 91 -4,-1.5 3,-1.8 1,-0.2 4,-0.7 0.997 110.9 34.9 -60.0 -64.4 -4.2 -7.1 0.9 25 25 A E H 3X S+ 0 0 56 -4,-2.5 4,-0.7 1,-0.3 -2,-0.2 0.601 110.7 61.2 -81.7 -8.8 -4.7 -4.7 3.8 26 26 A F H 3< S+ 0 0 30 -4,-1.7 -1,-0.3 -5,-0.2 -2,-0.2 0.476 98.4 64.9 -82.9 -4.2 -5.8 -1.8 1.6 27 27 A H H <4 S+ 0 0 149 -3,-1.8 -2,-0.2 -4,-0.2 -1,-0.1 0.960 117.0 17.2 -76.7 -51.0 -8.7 -4.1 0.6 28 28 A C H < S+ 0 0 94 -4,-0.7 2,-0.3 1,-0.1 -2,-0.1 0.965 124.3 49.9 -90.0 -63.3 -10.4 -4.3 4.0 29 29 A K < - 0 0 99 -4,-0.7 3,-0.2 1,-0.2 -1,-0.1 -0.583 59.6-163.7 -76.4 134.3 -9.1 -1.4 6.0 30 30 A K S S+ 0 0 77 1,-0.3 2,-0.4 -2,-0.3 -1,-0.2 0.732 86.0 27.3 -82.3 -23.6 -9.2 2.0 4.3 31 31 A Y S S- 0 0 144 -3,-0.1 -1,-0.3 -6,-0.0 2,-0.2 -0.957 79.2-136.1-141.7 117.4 -6.7 3.3 7.0 32 32 A L - 0 0 21 -2,-0.4 2,-0.1 -3,-0.2 -6,-0.0 -0.518 26.5-131.0 -62.8 135.4 -4.2 1.2 8.9 33 33 A S > - 0 0 67 -2,-0.2 4,-2.7 1,-0.0 5,-0.2 -0.291 31.2 -93.3 -73.2 171.0 -4.1 2.2 12.6 34 34 A L H > S+ 0 0 118 1,-0.2 4,-2.3 2,-0.2 5,-0.1 0.918 125.9 41.4 -53.2 -54.8 -0.9 2.9 14.5 35 35 A T H > S+ 0 0 101 2,-0.2 4,-3.0 1,-0.2 -1,-0.2 0.924 114.7 50.3 -65.0 -48.9 -0.4 -0.7 15.7 36 36 A E H > S+ 0 0 54 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.919 112.7 47.5 -57.9 -46.3 -1.4 -2.3 12.4 37 37 A R H X S+ 0 0 60 -4,-2.7 4,-2.4 2,-0.2 -1,-0.2 0.927 112.7 48.5 -61.1 -47.5 1.0 -0.1 10.5 38 38 A S H X S+ 0 0 44 -4,-2.3 4,-1.8 -5,-0.2 -2,-0.2 0.927 112.3 49.8 -59.8 -45.7 3.8 -0.8 12.9 39 39 A Q H X S+ 0 0 132 -4,-3.0 4,-2.0 1,-0.2 3,-0.4 0.952 111.8 46.7 -55.6 -55.7 3.1 -4.6 12.7 40 40 A I H X S+ 0 0 18 -4,-2.7 4,-2.7 1,-0.2 6,-0.3 0.879 108.5 57.5 -58.5 -39.8 3.1 -4.6 8.9 41 41 A A H <>S+ 0 0 10 -4,-2.4 5,-1.1 -5,-0.2 4,-0.4 0.889 106.6 48.8 -57.6 -43.3 6.4 -2.5 9.0 42 42 A H H ><5S+ 0 0 154 -4,-1.8 3,-1.1 -3,-0.4 -2,-0.2 0.964 116.4 41.0 -60.9 -54.6 8.1 -5.3 11.0 43 43 A A H 3<5S+ 0 0 69 -4,-2.0 -2,-0.2 1,-0.3 -3,-0.1 0.963 123.5 38.3 -56.6 -57.9 7.0 -8.1 8.7 44 44 A L T 3<5S- 0 0 3 -4,-2.7 -1,-0.3 -5,-0.2 -2,-0.2 0.240 103.9-123.5 -80.1 8.2 7.6 -6.2 5.5 45 45 A K T < 5S+ 0 0 158 -3,-1.1 -3,-0.2 -4,-0.4 2,-0.2 0.757 72.5 128.2 47.6 26.0 10.9 -4.4 6.6 46 46 A L < - 0 0 9 -5,-1.1 2,-0.3 -6,-0.3 -1,-0.2 -0.420 55.7-124.2 -95.0 179.8 9.0 -1.1 5.8 47 47 A S > - 0 0 71 -2,-0.2 4,-2.8 -3,-0.1 5,-0.2 -0.875 27.7-103.4-129.5 161.6 8.6 1.9 8.0 48 48 A E H > S+ 0 0 92 -2,-0.3 4,-2.3 1,-0.3 5,-0.1 0.804 122.1 47.1 -63.2 -32.3 5.4 3.8 9.1 49 49 A V H > S+ 0 0 84 2,-0.2 4,-3.0 3,-0.2 -1,-0.3 0.947 111.7 49.7 -69.7 -50.9 6.0 6.6 6.6 50 50 A Q H > S+ 0 0 100 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.907 114.9 45.2 -56.8 -41.9 6.7 4.2 3.7 51 51 A V H X S+ 0 0 0 -4,-2.8 4,-2.7 2,-0.2 5,-0.3 0.961 112.8 50.1 -68.9 -48.2 3.6 2.3 4.5 52 52 A K H X S+ 0 0 77 -4,-2.3 4,-3.1 -5,-0.2 -2,-0.2 0.919 111.7 49.2 -50.0 -50.4 1.5 5.4 4.9 53 53 A I H X S+ 0 0 85 -4,-3.0 4,-2.2 2,-0.2 -2,-0.2 0.904 112.2 46.4 -64.3 -45.7 2.8 6.8 1.5 54 54 A W H X S+ 0 0 21 -4,-2.4 4,-2.2 2,-0.2 -1,-0.2 0.965 117.0 44.5 -56.6 -52.1 2.1 3.5 -0.4 55 55 A F H X S+ 0 0 15 -4,-2.7 4,-2.9 1,-0.2 -2,-0.2 0.897 111.6 53.7 -61.7 -42.2 -1.4 3.3 1.1 56 56 A Q H X S+ 0 0 107 -4,-3.1 4,-2.0 -5,-0.3 -1,-0.2 0.895 108.8 49.1 -57.0 -44.3 -2.0 7.1 0.5 57 57 A N H X S+ 0 0 115 -4,-2.2 4,-1.3 2,-0.2 -2,-0.2 0.931 113.9 45.2 -64.2 -46.9 -1.1 6.6 -3.2 58 58 A R H X S+ 0 0 87 -4,-2.2 4,-1.2 1,-0.2 -2,-0.2 0.923 114.7 49.5 -59.8 -46.0 -3.5 3.7 -3.5 59 59 A R H X S+ 0 0 52 -4,-2.9 4,-1.1 1,-0.2 -1,-0.2 0.778 102.6 61.5 -66.3 -34.0 -6.2 5.6 -1.5 60 60 A A H >X S+ 0 0 53 -4,-2.0 3,-1.3 2,-0.2 4,-0.9 0.975 102.6 48.3 -61.2 -55.2 -5.9 8.8 -3.7 61 61 A K H >X S+ 0 0 144 -4,-1.3 4,-0.9 1,-0.3 3,-0.6 0.885 104.2 62.8 -54.2 -41.0 -7.0 7.1 -7.0 62 62 A W H >X S+ 0 0 65 -4,-1.2 4,-3.1 1,-0.2 3,-0.7 0.849 96.2 59.3 -52.1 -37.8 -10.0 5.5 -5.1 63 63 A K H