==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-MAY-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 28-JAN-13 2M3Z . COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN P7; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; . AUTHOR N.GOUDREAU,O.HUCKE . 55 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5556.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 12 21.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 7.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A I 0 0 168 0, 0.0 9,-0.4 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 147.3 0.6 -14.2 33.9 2 2 A Q - 0 0 60 7,-0.2 5,-0.1 6,-0.1 3,-0.0 -0.945 360.0-157.0-161.5 147.6 -1.7 -12.1 31.6 3 3 A K S S+ 0 0 174 -2,-0.3 2,-0.1 3,-0.2 4,-0.1 0.762 79.6 43.1 -98.0 -33.1 -5.5 -11.0 31.7 4 4 A G S S- 0 0 37 2,-0.5 4,-0.1 1,-0.0 5,-0.1 -0.433 96.5 -95.8-100.4 179.5 -6.0 -10.3 27.9 5 5 A N S S+ 0 0 139 -2,-0.1 2,-0.1 2,-0.1 -1,-0.0 0.827 107.9 64.3 -60.1 -34.5 -5.0 -12.0 24.7 6 6 A F S S- 0 0 122 1,-0.1 2,-2.0 8,-0.1 -2,-0.5 -0.426 106.1 -87.8 -91.3 165.5 -2.0 -9.6 24.6 7 7 A R + 0 0 108 1,-0.2 5,-0.1 -2,-0.1 -5,-0.1 -0.471 65.2 145.6 -72.0 71.9 1.1 -9.1 26.9 8 8 A N S S+ 0 0 20 -2,-2.0 6,-0.3 5,-0.2 -1,-0.2 0.402 87.6 3.7 -92.3 -3.2 -0.6 -6.7 29.3 9 9 A Q S S+ 0 0 89 -8,-0.2 2,-0.6 4,-0.1 -7,-0.2 0.346 105.8 98.6-143.2 -44.0 1.3 -8.0 32.4 10 10 A R S S- 0 0 161 -9,-0.4 2,-2.4 -4,-0.2 -1,-0.1 -0.406 119.8 -43.4 -53.6 99.3 3.7 -10.6 30.8 11 11 A K S S+ 0 0 200 -2,-0.6 2,-0.2 -3,-0.1 -1,-0.2 -0.367 135.2 45.6 66.1 -60.0 7.0 -8.5 30.6 12 12 A T S S- 0 0 40 -2,-2.4 2,-0.3 -5,-0.1 9,-0.0 -0.556 72.3-135.5-103.5 167.5 5.1 -5.4 29.2 13 13 A V - 0 0 56 -2,-0.2 9,-2.0 -4,-0.0 10,-0.4 -0.965 22.8-159.4-122.1 140.7 1.9 -3.4 30.1 14 14 A K B -A 21 0A 49 -2,-0.3 7,-0.2 -6,-0.3 11,-0.2 -0.987 15.3-121.7-133.0 127.7 -0.4 -2.3 27.2 15 15 A C - 0 0 5 5,-2.5 4,-0.3 -2,-0.4 9,-0.1 -0.350 8.0-151.9 -66.6 141.2 -3.1 0.4 27.0 16 16 A F S S+ 0 0 103 2,-0.1 -1,-0.1 1,-0.1 8,-0.1 0.733 91.6 49.3 -82.7 -26.6 -6.8 -0.6 26.2 17 17 A N S S+ 0 0 10 3,-0.1 -1,-0.1 1,-0.1 7,-0.0 0.962 129.1 12.9 -80.5 -57.1 -7.7 2.9 24.6 18 18 A C S S- 0 0 65 2,-0.1 -2,-0.1 12,-0.1 -1,-0.1 0.647 93.0-128.8 -99.9 -17.0 -4.7 3.6 22.1 19 19 A G + 0 0 32 -4,-0.3 2,-0.2 1,-0.3 -3,-0.1 0.316 62.2 129.5 88.0 -5.4 -3.1 0.1 22.1 20 20 A K - 0 0 130 1,-0.1 -5,-2.5 -6,-0.1 3,-0.4 -0.486 53.2-115.8 -82.8 151.6 0.5 1.2 22.8 21 21 A E B S+A 14 0A 72 -7,-0.2 -7,-0.2 1,-0.2 -1,-0.1 -0.145 81.7 52.6 -72.3 169.6 2.8 -0.2 25.5 22 22 A G S S+ 0 0 63 -9,-2.0 2,-0.3 1,-0.2 -1,-0.2 0.410 104.6 43.0 86.2 3.0 4.4 1.3 28.7 23 23 A H - 0 0 28 -10,-0.4 2,-0.3 -3,-0.4 -1,-0.2 -0.931 68.9-120.7-159.5 177.3 1.1 2.7 30.2 24 24 A I >> - 0 0 82 -2,-0.3 3,-1.8 -9,-0.1 4,-1.7 -0.888 40.2-101.5-126.9 159.6 -2.6 2.1 31.1 25 25 A A T 34 S+ 0 0 7 -2,-0.3 -10,-0.1 1,-0.3 5,-0.0 0.774 121.7 59.9 -58.7 -27.4 -5.7 4.1 30.0 26 26 A K T 34 S+ 0 0 195 1,-0.2 -1,-0.3 3,-0.0 -11,-0.0 0.792 115.3 35.2 -64.5 -30.6 -5.8 5.8 33.5 27 27 A N T <4 S+ 0 0 113 -3,-1.8 -2,-0.2 2,-0.0 -1,-0.2 0.589 99.4 111.6 -97.6 -19.9 -2.3 7.2 32.7 28 28 A C < - 0 0 14 -4,-1.7 -3,-0.0 1,-0.1 -5,-0.0 -0.147 51.2-161.3 -58.7 150.8 -2.9 7.7 28.9 29 29 A R + 0 0 248 2,-0.1 -1,-0.1 3,-0.0 3,-0.1 0.322 54.9 113.4-112.8 -1.6 -3.1 11.1 27.2 30 30 A A S S- 0 0 34 1,-0.1 -12,-0.1 -5,-0.0 2,-0.0 -0.343 80.4 -85.9 -68.8 155.9 -4.9 10.0 24.0 31 31 A P - 0 0 117 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.340 45.4-120.5 -64.2 143.4 -8.5 11.2 23.2 32 32 A R - 0 0 125 1,-0.1 -15,-0.0 -3,-0.1 -14,-0.0 -0.735 27.1-124.1 -97.2 133.5 -11.2 9.0 24.8 33 33 A K - 0 0 132 -2,-0.4 -1,-0.1 2,-0.2 4,-0.1 0.093 21.5-107.1 -68.1 177.0 -13.9 7.3 22.6 34 34 A K S S+ 0 0 210 2,-0.1 9,-1.1 8,-0.0 2,-0.3 0.125 99.9 25.3 -87.1 17.6 -17.7 7.3 22.5 35 35 A G B S-B 42 0B 17 7,-0.3 7,-0.3 8,-0.1 -2,-0.2 -0.964 98.8 -45.1-167.6 177.2 -17.6 3.7 24.0 36 36 A C - 0 0 5 5,-2.7 4,-0.5 -2,-0.3 9,-0.1 -0.221 26.2-154.9 -59.9 138.5 -15.9 1.0 26.0 37 37 A W S S+ 0 0 68 2,-0.1 -1,-0.1 1,-0.1 8,-0.1 0.643 94.3 54.4 -83.6 -18.2 -12.2 0.1 25.6 38 38 A K S S+ 0 0 113 3,-0.1 -1,-0.1 1,-0.0 7,-0.0 0.845 130.5 7.7 -90.7 -36.3 -12.8 -3.5 26.9 39 39 A C S S- 0 0 64 2,-0.2 -2,-0.1 0, 0.0 -1,-0.0 0.602 92.8-125.9-115.5 -19.8 -15.6 -4.7 24.5 40 40 A G + 0 0 59 -4,-0.5 2,-0.1 1,-0.3 -3,-0.1 0.237 63.3 131.2 94.3 -11.2 -15.8 -1.7 22.0 41 41 A K - 0 0 149 -6,-0.1 -5,-2.7 1,-0.1 3,-0.4 -0.381 53.8-113.8 -79.2 153.2 -19.6 -1.0 22.3 42 42 A E B S+B 35 0B 166 -7,-0.3 -7,-0.3 1,-0.2 -1,-0.1 -0.239 82.0 43.8 -78.1 166.1 -21.1 2.5 22.9 43 43 A G S S+ 0 0 78 -9,-1.1 2,-0.3 1,-0.1 -1,-0.2 0.433 97.6 64.9 85.6 4.4 -23.0 4.0 26.0 44 44 A H S S- 0 0 51 -3,-0.4 2,-0.3 -10,-0.1 -1,-0.1 -0.989 70.7-118.0-152.0 159.1 -20.8 2.8 29.0 45 45 A Q >> - 0 0 134 -2,-0.3 3,-2.2 -9,-0.1 4,-0.6 -0.757 41.7-110.5 -92.3 148.5 -17.5 2.9 30.8 46 46 A M T 34 S+ 0 0 55 -2,-0.3 -1,-0.1 1,-0.3 -10,-0.0 0.589 115.1 63.4 -66.4 -10.2 -15.6 -0.5 31.0 47 47 A K T 34 S+ 0 0 172 1,-0.2 -1,-0.3 3,-0.0 -3,-0.0 0.697 102.3 50.7 -79.8 -20.5 -16.1 -0.8 34.9 48 48 A D T <4 S+ 0 0 113 -3,-2.2 2,-1.9 1,-0.1 3,-0.4 0.579 86.4 96.2 -84.3 -13.3 -19.9 -1.0 34.2 49 49 A C < + 0 0 29 -4,-0.6 -1,-0.1 1,-0.2 -3,-0.1 -0.500 44.6 121.5 -77.3 69.0 -19.1 -3.7 31.6 50 50 A T + 0 0 121 -2,-1.9 -1,-0.2 2,-0.1 -2,-0.1 0.525 37.0 111.5-109.5 -14.8 -19.8 -6.6 34.1 51 51 A E - 0 0 173 -3,-0.4 2,-0.1 1,-0.1 -3,-0.0 -0.251 69.0-104.8 -70.7 152.5 -22.6 -8.6 32.2 52 52 A R - 0 0 238 1,-0.1 -1,-0.1 -2,-0.0 2,-0.1 -0.355 30.4-114.8 -72.6 151.8 -22.1 -12.1 30.7 53 53 A Q - 0 0 201 -2,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.415 34.7-173.6 -78.0 162.4 -21.8 -12.9 27.0 54 54 A A 0 0 106 -2,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.967 360.0 360.0-155.3 164.0 -24.4 -14.9 25.0 55 55 A N 0 0 236 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.742 360.0 360.0-154.7 360.0 -25.2 -16.5 21.6