==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=3-MAY-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 05-FEB-13 2M4H . COMPND 2 MOLECULE: FELINE CALICIVIRUS VPG PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: FELINE CALICIVIRUS; . AUTHOR R.N.KWOK,E.N.LEEN,J.R.BIRTLEY,S.N.PRATER,P.J.SIMPSON,S.CURRY . 67 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4281.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 65.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 47.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 10 A G 0 0 78 0, 0.0 64,-0.0 0, 0.0 65,-0.0 0.000 360.0 360.0 360.0-175.2 -9.4 6.3 -1.5 2 11 A T - 0 0 30 1,-0.2 2,-0.2 33,-0.1 6,-0.0 0.798 360.0-111.6 -70.7-111.6 -10.7 2.8 -0.6 3 12 A Y - 0 0 122 29,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.717 17.6-117.4-162.3-161.7 -11.2 1.8 3.1 4 13 A R S S+ 0 0 135 -2,-0.2 2,-0.6 6,-0.0 5,-0.0 -0.896 79.3 5.1-163.3 144.2 -9.7 -0.6 5.6 5 14 A G S S+ 0 0 46 -2,-0.3 2,-1.6 1,-0.1 27,-0.0 0.001 93.6 103.3 81.4 -32.4 -11.0 -3.6 7.7 6 15 A R S S- 0 0 150 -2,-0.6 -1,-0.1 1,-0.2 3,-0.1 -0.135 117.8 -75.3 -80.2 44.8 -14.3 -3.6 5.9 7 16 A G S S- 0 0 67 -2,-1.6 -1,-0.2 1,-0.2 0, 0.0 0.816 71.8-157.6 68.1 28.1 -13.4 -6.6 3.8 8 17 A V + 0 0 8 1,-0.2 -1,-0.2 -6,-0.0 23,-0.1 -0.067 28.7 178.1 -46.8 130.5 -11.2 -4.2 1.7 9 18 A A - 0 0 65 -3,-0.1 6,-0.2 22,-0.0 -1,-0.2 0.548 29.0-160.8-106.5 -19.0 -10.5 -5.4 -1.7 10 19 A L - 0 0 15 5,-0.1 -6,-0.0 4,-0.1 22,-0.0 0.177 41.5 -37.7 63.3 171.0 -8.6 -2.2 -2.5 11 20 A T S > S- 0 0 9 1,-0.1 4,-1.5 53,-0.1 5,-0.3 -0.260 70.9-102.2 -60.2 162.8 -7.9 -1.1 -6.1 12 21 A D H > S+ 0 0 132 2,-0.2 4,-1.1 1,-0.2 5,-0.1 0.903 112.1 34.5 -60.3 -50.6 -7.1 -3.9 -8.6 13 22 A D H > S+ 0 0 88 1,-0.2 4,-3.2 2,-0.2 3,-0.4 0.994 112.6 53.6 -69.8 -64.5 -3.3 -3.6 -8.8 14 23 A E H > S+ 0 0 2 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.735 106.1 54.3 -46.9 -36.6 -2.2 -2.5 -5.3 15 24 A Y H >X S+ 0 0 78 -4,-1.5 4,-1.1 2,-0.2 3,-0.6 0.975 115.2 39.1 -65.2 -54.1 -4.0 -5.4 -3.6 16 25 A D H >X S+ 0 0 83 -4,-1.1 4,-0.8 -3,-0.4 3,-0.7 0.904 115.9 53.7 -54.2 -42.8 -2.2 -7.9 -5.8 17 26 A E H 3X S+ 0 0 55 -4,-3.2 4,-2.5 1,-0.2 -1,-0.2 0.692 97.3 65.8 -70.5 -18.8 0.9 -5.7 -5.5 18 27 A W H S+ 0 0 45 -4,-2.7 5,-1.1 2,-0.2 -1,-0.2 0.931 114.7 39.7 -55.5 -48.0 4.8 -8.7 1.5 23 32 A A H ><5S+ 0 0 58 -4,-1.2 3,-1.4 3,-0.2 -2,-0.2 0.974 118.2 44.1 -65.3 -59.6 7.6 -10.3 -0.4 24 33 A S H 3<5S+ 0 0 33 -4,-3.6 -3,-0.2 1,-0.3 -2,-0.2 0.884 115.3 46.0 -61.0 -43.9 9.8 -7.3 -1.2 25 34 A R T 3<5S- 0 0 109 -4,-2.5 -1,-0.3 -5,-0.3 -2,-0.2 0.411 105.2-129.3 -84.7 3.9 9.6 -5.7 2.3 26 35 A K T < 5 + 0 0 183 -3,-1.4 -3,-0.2 1,-0.2 2,-0.2 0.754 69.1 117.1 60.2 26.6 10.3 -9.2 3.8 27 36 A L < - 0 0 63 -5,-1.1 -1,-0.2 -6,-0.4 -2,-0.0 -0.402 67.7-130.0-109.5-170.8 7.4 -8.8 6.1 28 37 A D + 0 0 146 -2,-0.2 2,-0.2 -3,-0.1 -6,-0.1 -0.551 45.6 161.6-143.2 66.3 4.1 -10.6 6.6 29 38 A L - 0 0 22 -11,-0.2 2,-0.1 1,-0.1 -7,-0.1 -0.609 35.8-122.6 -98.5 151.2 1.6 -7.8 6.6 30 39 A S > - 0 0 64 -2,-0.2 4,-1.6 1,-0.1 3,-0.1 -0.430 31.0-107.8 -85.2 166.8 -2.1 -7.9 6.0 31 40 A V H > S+ 0 0 13 1,-0.2 4,-3.5 2,-0.2 5,-0.3 0.920 115.7 62.3 -64.3 -42.9 -3.8 -5.9 3.3 32 41 A E H > S+ 0 0 81 1,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.901 104.3 48.3 -45.9 -53.7 -5.3 -3.4 5.7 33 42 A D H > S+ 0 0 76 2,-0.2 4,-2.5 1,-0.2 -1,-0.3 0.900 113.7 47.6 -54.0 -45.6 -1.9 -2.4 6.8 34 43 A F H X S+ 0 0 0 -4,-1.6 4,-3.0 2,-0.2 5,-0.3 0.956 108.4 53.4 -58.9 -53.7 -0.8 -2.0 3.2 35 44 A L H X S+ 0 0 0 -4,-3.5 4,-2.6 1,-0.2 -1,-0.2 0.830 110.2 49.8 -53.9 -35.2 -3.9 -0.0 2.3 36 45 A M H X S+ 0 0 38 -4,-2.1 4,-3.1 -5,-0.3 5,-0.3 0.970 109.4 49.6 -64.6 -57.8 -3.0 2.3 5.2 37 46 A L H X S+ 0 0 19 -4,-2.5 4,-1.9 1,-0.2 -2,-0.2 0.911 119.7 37.4 -47.0 -51.5 0.6 2.7 4.0 38 47 A R H X S+ 0 0 0 -4,-3.0 4,-3.8 2,-0.2 5,-0.4 0.903 112.9 58.5 -71.5 -44.2 -0.5 3.5 0.5 39 48 A H H X S+ 0 0 32 -4,-2.6 4,-3.7 -5,-0.3 5,-0.3 0.965 110.5 41.8 -44.2 -60.1 -3.6 5.5 1.7 40 49 A R H X>S+ 0 0 64 -4,-3.1 5,-3.0 1,-0.2 4,-0.8 0.925 118.6 45.5 -59.6 -48.4 -1.4 7.9 3.6 41 50 A A H <5S+ 0 0 31 -4,-1.9 -1,-0.2 -5,-0.3 -2,-0.2 0.957 120.4 39.2 -57.6 -56.8 1.2 8.2 0.9 42 51 A A H <5S+ 0 0 24 -4,-3.8 -2,-0.2 -5,-0.1 -3,-0.2 0.921 125.7 35.7 -58.6 -49.3 -1.4 8.6 -1.9 43 52 A L H <5S- 0 0 105 -4,-3.7 -3,-0.2 -5,-0.4 -2,-0.1 0.997 121.1 -83.1 -77.9 -72.4 -3.8 10.8 -0.0 44 53 A G T <5S+ 0 0 64 -4,-0.8 2,-0.4 -5,-0.3 -3,-0.2 0.308 79.9 119.6 167.4 43.4 -1.7 13.1 2.2 45 54 A A < - 0 0 41 -5,-3.0 -1,-0.1 -6,-0.2 -2,-0.1 -0.964 41.1-157.9-122.6 140.8 -0.6 11.5 5.5 46 55 A D + 0 0 140 -2,-0.4 2,-0.3 4,-0.1 -5,-0.0 -0.265 27.9 154.9-119.5 45.2 3.0 11.1 6.5 47 56 A D >> - 0 0 53 1,-0.1 4,-1.8 -10,-0.1 3,-1.2 -0.613 53.5-118.6 -67.9 128.1 3.1 8.3 9.1 48 57 A N H 3> S+ 0 0 92 -2,-0.3 4,-3.1 1,-0.3 5,-0.3 0.767 112.3 54.1 -44.6 -40.1 6.6 6.8 9.0 49 58 A D H 3> S+ 0 0 88 1,-0.2 4,-1.7 2,-0.2 -1,-0.3 0.936 113.3 44.8 -61.4 -42.5 5.4 3.3 8.0 50 59 A A H <> S+ 0 0 0 -3,-1.2 4,-2.8 2,-0.2 -2,-0.2 0.835 113.4 50.0 -66.0 -35.3 3.5 4.9 5.2 51 60 A V H X S+ 0 0 47 -4,-1.8 4,-3.2 2,-0.2 -2,-0.2 0.896 111.2 47.1 -76.2 -38.8 6.5 7.1 4.2 52 61 A K H X S+ 0 0 108 -4,-3.1 4,-2.0 2,-0.2 -1,-0.2 0.808 112.8 51.7 -69.0 -30.3 8.9 4.2 4.2 53 62 A F H X S+ 0 0 4 -4,-1.7 4,-3.5 -5,-0.3 5,-0.3 0.957 110.6 48.4 -63.0 -53.9 6.3 2.4 2.2 54 63 A R H X S+ 0 0 134 -4,-2.8 4,-3.1 2,-0.2 -2,-0.2 0.949 110.5 50.2 -47.5 -61.1 6.2 5.3 -0.2 55 64 A S H < S+ 0 0 47 -4,-3.2 4,-0.4 2,-0.2 -1,-0.2 0.910 118.5 37.9 -47.8 -52.3 9.9 5.5 -0.5 56 65 A W H >X S+ 0 0 37 -4,-2.0 3,-1.2 1,-0.2 4,-0.6 0.967 121.9 42.4 -65.1 -51.9 10.2 1.8 -1.3 57 66 A W H 3X>S+ 0 0 0 -4,-3.5 5,-3.2 1,-0.3 4,-2.2 0.743 112.7 54.2 -72.2 -23.5 7.1 1.5 -3.5 58 67 A N H 3<5S+ 0 0 41 -4,-3.1 -1,-0.3 -5,-0.3 -2,-0.2 0.429 101.8 57.0 -94.2 -1.3 7.7 4.8 -5.3 59 68 A S H <45S+ 0 0 110 -3,-1.2 -1,-0.2 -4,-0.4 -2,-0.2 0.617 124.8 21.5 -93.9 -17.1 11.2 3.9 -6.4 60 69 A R H <5S- 0 0 112 -4,-0.6 -2,-0.2 -3,-0.2 -3,-0.1 0.798 142.9 -1.8-114.1 -58.1 9.8 0.8 -8.1 61 70 A T T <5 - 0 0 51 -4,-2.2 -3,-0.2 -5,-0.2 -4,-0.1 0.850 61.0-151.4-106.1 -60.7 6.2 1.1 -8.9 62 71 A K < - 0 0 130 -5,-3.2 3,-0.4 -8,-0.1 -4,-0.2 0.674 47.3-122.2 76.3 24.7 4.8 4.4 -7.6 63 72 A M - 0 0 25 -6,-0.5 2,-0.1 1,-0.2 -9,-0.0 0.289 15.8 -89.2 48.9-166.2 1.5 2.6 -7.3 64 73 A A > - 0 0 21 -53,-0.0 3,-2.4 0, 0.0 2,-0.7 -0.629 46.2-133.4-141.8 70.5 -1.9 3.3 -8.8 65 74 A N T 3 S- 0 0 48 -3,-0.4 -2,-0.0 1,-0.3 -26,-0.0 -0.015 72.6 -48.0 -41.3 80.2 -3.1 5.6 -6.0 66 75 A D T 3 0 0 36 -2,-0.7 -1,-0.3 1,-0.2 -54,-0.0 0.740 360.0 360.0 57.2 26.3 -6.6 4.0 -5.7 67 76 A Y < 0 0 207 -3,-2.4 -1,-0.2 -56,-0.1 -54,-0.2 -0.637 360.0 360.0 -95.9 360.0 -7.0 4.1 -9.5