==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 11-JUL-02 1M5Z . COMPND 2 MOLECULE: AMPA RECEPTOR INTERACTING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR W.FENG,J.FAN,M.JIANG,Y.SHI,M.ZHANG . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5630.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 63.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 27 29.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 16 A S 0 0 77 0, 0.0 5,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -49.5 -10.0 -14.3 -11.0 2 17 A P - 0 0 116 0, 0.0 88,-0.1 0, 0.0 3,-0.1 0.643 360.0 -25.9 -62.2 -13.5 -11.3 -17.0 -8.5 3 18 A T S S+ 0 0 103 1,-0.2 2,-0.6 86,-0.1 87,-0.1 0.209 106.4 105.0-163.0 -56.0 -7.8 -17.1 -7.1 4 19 A P - 0 0 90 0, 0.0 -1,-0.2 0, 0.0 85,-0.1 -0.208 69.0-137.8 -47.7 95.7 -5.0 -16.0 -9.5 5 20 A V - 0 0 62 -2,-0.6 2,-0.4 85,-0.2 85,-0.3 0.110 9.0-133.7 -50.0 170.3 -4.3 -12.5 -8.1 6 21 A E E -A 89 0A 102 83,-1.5 83,-1.8 -5,-0.1 -1,-0.1 -0.982 16.7-118.2-137.7 122.8 -3.7 -9.6 -10.4 7 22 A L E +A 88 0A 99 -2,-0.4 2,-0.3 81,-0.3 81,-0.3 -0.302 35.5 176.3 -60.0 137.5 -0.9 -7.0 -10.1 8 23 A H E -A 87 0A 41 79,-3.1 79,-1.9 2,-0.0 2,-0.2 -0.942 28.0-126.5-149.3 122.0 -2.0 -3.5 -9.5 9 24 A K E -A 86 0A 131 -2,-0.3 2,-0.4 77,-0.2 77,-0.2 -0.452 32.5-174.9 -68.9 135.4 0.1 -0.4 -8.9 10 25 A V E -A 85 0A 1 75,-3.3 75,-3.2 -2,-0.2 2,-0.4 -0.994 12.3-172.9-137.4 143.0 -0.8 1.5 -5.8 11 26 A T E +A 84 0A 45 -2,-0.4 2,-0.2 73,-0.2 73,-0.2 -0.989 10.5 172.3-134.5 141.4 0.3 4.8 -4.2 12 27 A L E -A 83 0A 0 71,-0.7 71,-1.4 -2,-0.4 2,-0.4 -0.801 24.5-127.4-138.4-179.6 -0.6 6.4 -0.8 13 28 A Y E -A 82 0A 149 69,-0.3 69,-0.3 8,-0.3 2,-0.2 -0.986 18.3-154.1-139.0 125.4 0.3 9.2 1.5 14 29 A K - 0 0 48 67,-0.9 2,-0.4 -2,-0.4 7,-0.1 -0.515 13.2-128.2 -94.9 164.9 1.2 9.0 5.2 15 30 A D > - 0 0 104 5,-0.3 3,-2.9 -2,-0.2 2,-1.9 -0.913 30.6-101.8-116.4 141.1 0.8 11.5 8.0 16 31 A S T 3 S+ 0 0 125 -2,-0.4 65,-0.0 1,-0.3 -2,-0.0 -0.357 117.1 23.7 -60.1 85.0 3.4 12.7 10.4 17 32 A G T 3 S+ 0 0 76 -2,-1.9 -1,-0.3 1,-0.3 2,-0.2 0.323 89.0 129.3 138.3 -3.7 2.3 10.7 13.3 18 33 A M < - 0 0 92 -3,-2.9 -1,-0.3 1,-0.1 3,-0.1 -0.482 48.8-149.8 -80.6 151.3 0.4 7.8 11.8 19 34 A E S S+ 0 0 177 -2,-0.2 2,-0.3 1,-0.1 58,-0.1 0.541 79.7 11.1 -94.9 -10.5 1.1 4.2 12.7 20 35 A D S S- 0 0 37 -5,-0.1 -5,-0.3 56,-0.1 4,-0.1 -0.928 74.2-109.2-154.8 175.9 0.2 2.8 9.3 21 36 A F S S- 0 0 1 2,-0.4 -8,-0.3 -2,-0.3 24,-0.2 0.399 82.9 -73.4 -94.1 2.1 -0.7 3.8 5.7 22 37 A G S S+ 0 0 9 22,-0.2 18,-3.1 1,-0.1 2,-0.2 0.589 110.8 60.8 116.3 18.2 -4.3 2.9 6.1 23 38 A F E -B 39 0A 4 16,-0.3 -2,-0.4 22,-0.1 16,-0.3 -0.840 65.6-134.8-174.0 134.4 -4.3 -0.9 6.1 24 39 A S E -B 38 0A 46 14,-2.2 13,-3.1 -2,-0.2 14,-1.8 -0.633 22.6-146.7 -93.0 151.3 -2.8 -3.8 8.2 25 40 A V E -B 36 0A 16 11,-0.3 2,-0.4 -2,-0.2 11,-0.3 -0.697 0.9-143.2-114.9 168.0 -1.1 -6.8 6.6 26 41 A A E -B 35 0A 32 9,-3.2 9,-2.6 -2,-0.2 2,-0.4 -0.990 25.3-109.2-133.9 140.7 -0.8 -10.5 7.4 27 42 A D E -B 34 0A 71 -2,-0.4 2,-1.6 7,-0.2 7,-0.3 -0.529 29.4-131.8 -70.1 121.7 2.0 -12.9 7.0 28 43 A G > + 0 0 2 5,-2.5 3,-0.9 -2,-0.4 5,-0.1 -0.578 36.3 166.8 -77.0 89.6 1.2 -15.4 4.3 29 44 A L T 3 + 0 0 147 -2,-1.6 -1,-0.2 1,-0.2 -2,-0.0 0.491 64.0 78.8 -83.4 -2.5 2.1 -18.6 6.0 30 45 A L T 3 S- 0 0 140 -3,-0.1 -1,-0.2 3,-0.0 -2,-0.1 0.652 129.5 -28.9 -77.2 -13.5 0.4 -20.7 3.4 31 46 A E S < S- 0 0 132 -3,-0.9 2,-0.2 2,-0.1 -2,-0.1 0.019 107.6 -51.9-157.9 -83.8 3.5 -20.1 1.3 32 47 A K S S+ 0 0 134 33,-0.1 2,-0.3 36,-0.0 35,-0.1 -0.822 85.7 42.5-175.7 134.2 5.6 -16.9 1.8 33 48 A G - 0 0 3 33,-0.2 -5,-2.5 -2,-0.2 36,-0.3 -0.895 69.6 -83.2 128.6-159.2 4.9 -13.2 1.9 34 49 A V E -B 27 0A 1 -2,-0.3 22,-0.5 -7,-0.3 2,-0.3 -0.987 27.9-167.8-154.8 144.4 2.3 -10.8 3.3 35 50 A Y E -BC 26 55A 40 -9,-2.6 -9,-3.2 -2,-0.3 20,-0.2 -0.968 38.2 -89.2-135.9 151.4 -1.1 -9.5 2.3 36 51 A V E -B 25 0A 7 18,-0.7 17,-1.3 -2,-0.3 -11,-0.3 -0.383 32.6-172.1 -60.5 123.6 -3.4 -6.7 3.5 37 52 A K E - 0 0 121 -13,-3.1 2,-0.3 1,-0.3 -12,-0.2 0.744 69.8 -6.2 -88.2 -27.5 -5.6 -8.0 6.3 38 53 A N E -B 24 0A 84 -14,-1.8 -14,-2.2 13,-0.0 2,-0.4 -0.911 59.2-151.7-169.7 140.3 -7.8 -4.9 6.5 39 54 A I E -B 23 0A 32 -2,-0.3 -16,-0.3 -16,-0.3 -17,-0.0 -0.926 34.4-103.4-119.6 142.9 -7.9 -1.4 5.0 40 55 A R > - 0 0 162 -18,-3.1 3,-1.5 -2,-0.4 6,-0.5 -0.486 42.8-117.7 -65.4 111.7 -9.4 1.8 6.6 41 56 A P T 3 S+ 0 0 117 0, 0.0 -1,-0.1 0, 0.0 -19,-0.0 -0.337 98.1 5.2 -55.5 109.2 -12.8 2.3 4.8 42 57 A A T 3 S+ 0 0 86 -2,-0.4 -2,-0.1 1,-0.2 0, 0.0 0.840 110.0 115.1 83.4 38.1 -12.5 5.7 3.0 43 58 A G S <> S- 0 0 8 -3,-1.5 4,-3.0 -21,-0.1 3,-0.3 -0.554 86.2 -70.2-123.9-170.4 -8.8 6.2 3.9 44 59 A P H > S+ 0 0 47 0, 0.0 4,-2.1 0, 0.0 6,-0.2 0.889 133.1 49.5 -49.8 -43.6 -5.4 6.5 2.1 45 60 A G H >>S+ 0 0 0 -24,-0.2 5,-1.9 1,-0.2 4,-1.9 0.880 113.3 45.1 -64.9 -38.5 -5.6 2.8 1.3 46 61 A D H 45S+ 0 0 92 -6,-0.5 -1,-0.2 -3,-0.3 -24,-0.0 0.830 113.2 51.2 -73.6 -32.8 -9.1 3.1 -0.1 47 62 A L H <5S+ 0 0 148 -4,-3.0 -2,-0.2 1,-0.2 -1,-0.2 0.820 110.7 49.1 -73.0 -31.8 -8.1 6.2 -2.0 48 63 A G H <5S- 0 0 27 -4,-2.1 -37,-0.2 -5,-0.3 -2,-0.2 0.892 117.2-108.9 -74.9 -40.9 -5.1 4.4 -3.5 49 64 A G T <5 + 0 0 37 -4,-1.9 2,-0.4 1,-0.2 -3,-0.2 0.466 55.2 162.6 123.3 8.4 -7.0 1.3 -4.6 50 65 A L < - 0 0 11 -5,-1.9 -1,-0.2 -6,-0.2 -2,-0.1 -0.446 19.7-165.2 -63.4 116.0 -5.7 -1.3 -2.2 51 66 A K > - 0 0 98 -2,-0.4 3,-2.1 1,-0.1 -15,-0.2 -0.847 33.3 -82.1-107.3 141.6 -8.1 -4.2 -2.3 52 67 A P T 3 S+ 0 0 74 0, 0.0 38,-0.2 0, 0.0 3,-0.1 -0.005 118.2 24.4 -39.5 135.8 -8.3 -7.1 0.3 53 68 A Y T 3 S+ 0 0 153 -17,-1.3 2,-1.7 1,-0.2 35,-0.2 0.328 78.5 156.1 85.4 -5.3 -5.7 -9.8 -0.3 54 69 A D < - 0 0 0 -3,-2.1 2,-0.9 -18,-0.1 -18,-0.7 -0.307 34.4-152.2 -56.2 85.1 -3.5 -7.3 -2.2 55 70 A R E -CD 35 88A 39 33,-2.7 33,-0.9 -2,-1.7 2,-0.4 -0.503 16.5-126.2 -66.7 102.6 -0.3 -9.2 -1.6 56 71 A L E + D 0 87A 1 -2,-0.9 31,-0.3 -22,-0.5 -22,-0.2 -0.331 37.4 172.7 -54.5 107.3 2.3 -6.4 -1.7 57 72 A L E + 0 0 10 29,-2.1 7,-0.6 -2,-0.4 2,-0.5 0.960 65.4 15.0 -83.0 -63.5 4.8 -7.7 -4.3 58 73 A Q E -ED 63 86A 54 28,-1.8 28,-3.0 5,-0.3 2,-0.6 -0.960 68.2-159.9-121.2 118.2 7.2 -4.8 -4.8 59 74 A V E > S-ED 62 85A 2 3,-3.1 3,-3.0 -2,-0.5 26,-0.3 -0.856 75.8 -25.6-100.5 120.2 7.3 -1.9 -2.3 60 75 A N T 3 S- 0 0 69 24,-3.0 -1,-0.2 -2,-0.6 25,-0.2 0.861 128.7 -48.1 46.4 43.1 8.9 1.4 -3.5 61 76 A H T 3 S+ 0 0 160 1,-0.2 2,-0.5 -3,-0.2 -1,-0.3 0.133 116.2 121.2 86.6 -19.4 10.9 -0.6 -6.1 62 77 A V E < -E 59 0A 48 -3,-3.0 -3,-3.1 1,-0.1 2,-1.8 -0.672 68.9-128.8 -81.9 120.7 11.9 -3.1 -3.4 63 78 A R E +E 58 0A 136 -2,-0.5 3,-0.4 -5,-0.3 -5,-0.3 -0.485 41.6 161.9 -70.1 85.9 10.9 -6.7 -4.2 64 79 A T > + 0 0 0 -2,-1.8 3,-0.7 -7,-0.6 -6,-0.2 -0.043 37.5 112.0 -96.5 30.9 9.1 -7.4 -0.9 65 80 A R T 3 S+ 0 0 81 -8,-0.2 -31,-0.3 1,-0.2 -1,-0.2 0.925 84.2 37.2 -68.4 -45.7 7.2 -10.4 -2.4 66 81 A D T 3 S+ 0 0 107 -3,-0.4 -33,-0.2 -9,-0.1 -1,-0.2 0.155 99.8 115.2 -92.0 18.3 9.1 -13.0 -0.3 67 82 A F < - 0 0 58 -3,-0.7 2,-0.2 -10,-0.2 -34,-0.2 -0.283 61.0-123.9 -82.2 171.8 9.2 -10.7 2.7 68 83 A D >> - 0 0 60 -36,-0.1 4,-2.9 -41,-0.1 3,-1.9 -0.701 28.1-100.7-114.1 166.9 7.5 -11.2 6.0 69 84 A C H 3> S+ 0 0 46 -36,-0.3 4,-3.3 1,-0.3 -44,-0.1 0.895 123.3 57.1 -51.5 -44.6 5.0 -9.2 8.0 70 85 A C H 34 S+ 0 0 81 1,-0.2 -1,-0.3 2,-0.2 5,-0.1 0.714 115.4 38.5 -61.1 -20.1 7.9 -7.9 10.3 71 86 A L H <> S+ 0 0 68 -3,-1.9 4,-1.7 2,-0.1 -2,-0.2 0.759 117.8 46.7 -99.5 -33.4 9.5 -6.6 7.1 72 87 A V H X S+ 0 0 1 -4,-2.9 4,-1.9 2,-0.2 -2,-0.2 0.851 106.1 59.4 -77.5 -35.9 6.4 -5.4 5.3 73 88 A V H X S+ 0 0 65 -4,-3.3 4,-1.9 -5,-0.3 5,-0.1 0.955 113.8 36.0 -57.6 -52.4 5.0 -3.6 8.3 74 89 A P H > S+ 0 0 48 0, 0.0 4,-1.5 0, 0.0 5,-0.2 0.924 113.3 57.4 -67.6 -44.8 8.1 -1.3 8.6 75 90 A L H < S+ 0 0 45 -4,-1.7 4,-0.4 1,-0.2 -2,-0.2 0.829 109.1 49.2 -54.9 -31.6 8.6 -1.0 4.9 76 91 A I H >< S+ 0 0 1 -4,-1.9 3,-0.8 1,-0.2 -1,-0.2 0.946 116.8 37.8 -72.6 -51.4 5.1 0.3 4.8 77 92 A A H 3< S+ 0 0 33 -4,-1.9 -2,-0.2 1,-0.2 3,-0.2 0.477 114.7 59.1 -78.8 -3.1 5.5 2.9 7.5 78 93 A E T 3< S+ 0 0 153 -4,-1.5 -1,-0.2 -5,-0.1 -2,-0.2 0.481 76.0 89.5-103.0 -6.0 9.1 3.6 6.3 79 94 A S S X S- 0 0 28 -3,-0.8 3,-0.5 -4,-0.4 2,-0.3 0.667 88.8-139.8 -64.8 -14.7 8.0 4.7 2.8 80 95 A G T 3 - 0 0 36 -3,-0.2 -1,-0.2 1,-0.2 -66,-0.2 -0.717 61.3 -12.7 95.1-143.0 7.8 8.2 4.2 81 96 A N T 3 S+ 0 0 125 -2,-0.3 -67,-0.9 -68,-0.1 2,-0.3 0.528 135.9 37.9 -74.6 -5.5 5.0 10.6 3.3 82 97 A K E < -A 13 0A 72 -3,-0.5 2,-0.4 -69,-0.3 -69,-0.3 -0.994 64.5-152.6-146.2 151.3 4.0 8.3 0.4 83 98 A L E +A 12 0A 0 -71,-1.4 -71,-0.7 -2,-0.3 2,-0.6 -0.846 14.4 179.9-129.7 97.9 3.8 4.6 -0.3 84 99 A D E +A 11 0A 48 -2,-0.4 -24,-3.0 -73,-0.2 2,-0.3 -0.857 23.1 144.4 -99.2 117.9 4.3 3.5 -3.9 85 100 A L E -AD 10 59A 0 -75,-3.2 -75,-3.3 -2,-0.6 2,-0.6 -0.977 47.0-124.0-150.2 162.9 4.0 -0.3 -4.3 86 101 A V E +AD 9 58A 23 -28,-3.0 -29,-2.1 -2,-0.3 -28,-1.8 -0.932 34.7 179.1-114.1 109.5 2.8 -3.0 -6.7 87 102 A I E -AD 8 56A 0 -79,-1.9 -79,-3.1 -2,-0.6 2,-0.4 -0.590 19.6-138.2-105.5 169.3 0.4 -5.5 -5.1 88 103 A S E +AD 7 55A 3 -33,-0.9 -33,-2.7 -81,-0.3 2,-0.3 -0.980 25.9 165.5-133.4 121.7 -1.5 -8.5 -6.4 89 104 A R E -A 6 0A 43 -83,-1.8 -83,-1.5 -2,-0.4 -36,-0.1 -0.982 40.2-107.0-136.4 147.7 -5.1 -9.4 -5.6 90 105 A N 0 0 49 -2,-0.3 -85,-0.2 -85,-0.3 -36,-0.1 -0.589 360.0 360.0 -74.6 122.7 -7.7 -11.8 -7.1 91 106 A P 0 0 80 0, 0.0 -1,-0.2 0, 0.0 -86,-0.1 0.977 360.0 360.0 -70.9 360.0 -10.4 -9.8 -9.1