==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 25-JUL-02 1M8L . COMPND 2 MOLECULE: VPR PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR N.MORELLET,S.BOUAZIZ,C.LENOIR,B.P.ROQUES . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8556.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 63.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 47 49.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 231 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 165.3 -28.0 0.1 -7.3 2 2 A E - 0 0 67 1,-0.1 2,-2.0 9,-0.1 9,-0.0 -0.093 360.0 -76.3 -76.5-177.1 -26.5 -2.1 -4.6 3 3 A Q - 0 0 79 8,-0.0 -1,-0.1 12,-0.0 0, 0.0 -0.400 64.9-172.4 -79.7 58.8 -25.9 -5.9 -4.8 4 4 A A - 0 0 58 -2,-2.0 4,-0.1 4,-0.1 2,-0.1 -0.416 5.1-159.2 -63.9 116.4 -29.6 -6.5 -4.3 5 5 A P - 0 0 71 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 -0.223 34.8 -96.8 -81.4-179.6 -30.5 -10.2 -3.9 6 6 A E S S+ 0 0 181 1,-0.3 2,-1.6 -2,-0.1 -2,-0.0 0.989 123.2 48.3 -59.7 -62.1 -33.9 -11.8 -4.4 7 7 A D S S- 0 0 129 1,-0.0 2,-1.1 -3,-0.0 -1,-0.3 -0.644 89.9-154.4 -82.0 83.5 -34.9 -11.6 -0.7 8 8 A Q + 0 0 87 -2,-1.6 -4,-0.1 -3,-0.3 -2,-0.0 -0.497 22.1 175.8 -67.2 95.8 -33.8 -8.0 -0.2 9 9 A G - 0 0 33 -2,-1.1 2,-2.3 1,-0.1 -1,-0.0 -0.048 54.7 -57.9 -82.9-168.9 -33.0 -7.9 3.5 10 10 A P + 0 0 140 0, 0.0 2,-1.5 0, 0.0 -1,-0.1 -0.468 66.1 178.1 -76.1 70.8 -31.6 -4.9 5.5 11 11 A Q - 0 0 57 -2,-2.3 2,-1.2 1,-0.1 -9,-0.1 -0.618 13.7-159.3 -83.1 84.7 -28.5 -4.7 3.3 12 12 A R - 0 0 201 -2,-1.5 -1,-0.1 1,-0.2 -3,-0.0 -0.587 58.3 -47.8 -77.8 96.6 -26.8 -1.7 4.8 13 13 A E - 0 0 84 -2,-1.2 5,-0.3 4,-0.1 -1,-0.2 0.920 53.4-166.7 45.2 85.3 -24.4 -0.4 2.1 14 14 A P S > S+ 0 0 21 0, 0.0 4,-2.6 0, 0.0 5,-0.3 0.988 80.0 48.9 -55.0 -63.2 -22.4 -3.3 0.6 15 15 A Y T 4 S+ 0 0 118 1,-0.2 -13,-0.0 2,-0.2 -12,-0.0 -0.291 103.1 43.6 -72.1 163.6 -19.9 -0.9 -1.1 16 16 A N T 4 S+ 0 0 73 1,-0.1 -1,-0.2 -2,-0.0 0, 0.0 0.888 124.8 42.5 57.5 41.2 -18.4 1.9 1.0 17 17 A D T > S+ 0 0 91 -3,-0.3 4,-1.5 0, 0.0 -2,-0.2 -0.090 117.3 40.1-167.8 -61.7 -17.9 -0.7 3.7 18 18 A W H X S+ 0 0 115 -4,-2.6 4,-2.8 -5,-0.3 5,-0.2 0.902 116.1 56.0 -62.1 -44.5 -16.7 -3.7 1.8 19 19 A T H > S+ 0 0 40 -5,-0.3 4,-2.3 1,-0.2 -1,-0.2 0.914 107.9 46.1 -51.2 -50.9 -14.6 -1.2 -0.2 20 20 A L H > S+ 0 0 65 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.781 112.1 53.0 -66.7 -29.2 -13.0 0.1 3.0 21 21 A E H X S+ 0 0 106 -4,-1.5 4,-1.9 2,-0.2 -2,-0.2 0.890 109.1 47.0 -70.9 -44.8 -12.5 -3.6 4.1 22 22 A L H X S+ 0 0 74 -4,-2.8 4,-2.5 2,-0.2 -2,-0.2 0.907 114.5 48.8 -63.0 -43.5 -10.6 -4.4 0.8 23 23 A L H X S+ 0 0 32 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.964 110.2 50.2 -55.3 -58.3 -8.6 -1.2 1.3 24 24 A E H X S+ 0 0 100 -4,-2.4 4,-2.4 1,-0.2 -2,-0.2 0.801 110.2 52.5 -49.8 -37.1 -7.9 -2.2 4.9 25 25 A E H X S+ 0 0 130 -4,-1.9 4,-2.8 2,-0.2 -1,-0.2 0.953 111.6 42.8 -65.7 -54.1 -6.8 -5.7 3.5 26 26 A L H X S+ 0 0 74 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.838 115.8 51.3 -63.8 -33.1 -4.3 -4.2 1.0 27 27 A K H X S+ 0 0 85 -4,-2.7 4,-3.0 2,-0.2 -1,-0.2 0.916 111.1 46.5 -67.3 -47.7 -3.1 -1.7 3.6 28 28 A N H X S+ 0 0 108 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.924 111.7 52.5 -59.7 -47.8 -2.6 -4.5 6.2 29 29 A E H X S+ 0 0 91 -4,-2.8 4,-1.3 2,-0.2 -2,-0.2 0.931 114.7 41.9 -51.9 -53.3 -0.8 -6.6 3.6 30 30 A A H X S+ 0 0 2 -4,-2.2 4,-2.8 1,-0.2 3,-0.3 0.959 114.1 48.3 -64.1 -54.0 1.5 -3.7 2.7 31 31 A V H < S+ 0 0 53 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.784 105.2 60.1 -63.8 -28.8 2.3 -2.4 6.3 32 32 A R H < S+ 0 0 223 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.959 119.9 27.6 -55.6 -54.4 3.1 -6.0 7.5 33 33 A H H < S+ 0 0 79 -4,-1.3 -2,-0.2 -3,-0.3 -1,-0.2 0.764 132.0 41.4 -75.7 -32.3 5.9 -6.2 5.0 34 34 A F < - 0 0 23 -4,-2.8 2,-2.3 -5,-0.2 3,-0.4 -0.693 65.3-179.6-124.4 71.5 6.5 -2.5 4.9 35 35 A P + 0 0 112 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 -0.481 40.4 126.8 -75.6 74.6 6.3 -1.0 8.5 36 36 A R - 0 0 140 -2,-2.3 -5,-0.0 1,-0.0 0, 0.0 0.758 56.5-149.3-102.3 -38.6 7.0 2.5 7.2 37 37 A I S >> S+ 0 0 124 -3,-0.4 3,-1.8 1,-0.1 4,-0.9 0.027 73.9 107.8 78.2 -22.1 4.1 4.6 8.6 38 38 A W H 3> + 0 0 95 1,-0.3 4,-2.7 2,-0.2 5,-0.3 0.823 62.5 75.0 -45.7 -40.5 4.6 6.8 5.4 39 39 A L H 3> S+ 0 0 22 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.837 96.6 46.3 -36.9 -49.9 1.2 5.2 4.4 40 40 A H H <> S+ 0 0 103 -3,-1.8 4,-2.1 2,-0.2 3,-0.2 0.936 110.9 50.0 -64.3 -52.8 -0.5 7.5 6.8 41 41 A S H X S+ 0 0 64 -4,-0.9 4,-2.5 1,-0.2 -2,-0.2 0.849 107.7 54.6 -58.6 -39.4 1.3 10.7 5.8 42 42 A L H X S+ 0 0 39 -4,-2.7 4,-2.4 2,-0.2 -1,-0.2 0.881 108.0 50.6 -61.5 -39.7 0.5 9.9 2.1 43 43 A G H X S+ 0 0 18 -4,-1.4 4,-1.4 -5,-0.3 9,-0.2 0.918 108.9 50.4 -61.5 -47.2 -3.2 9.7 3.1 44 44 A Q H X S+ 0 0 116 -4,-2.1 4,-0.9 2,-0.2 3,-0.5 0.928 112.4 47.0 -57.9 -47.5 -2.9 13.1 4.9 45 45 A H H >X S+ 0 0 97 -4,-2.5 4,-2.3 1,-0.2 3,-0.8 0.901 109.2 55.0 -58.3 -43.8 -1.3 14.6 1.8 46 46 A I H 3X>S+ 0 0 20 -4,-2.4 4,-2.9 1,-0.3 5,-2.1 0.738 99.0 61.5 -66.1 -22.6 -4.1 13.0 -0.3 47 47 A Y H 3<5S+ 0 0 154 -4,-1.4 -1,-0.3 -3,-0.5 -2,-0.2 0.828 109.4 42.2 -71.4 -28.5 -6.7 14.7 1.9 48 48 A E H <<5S+ 0 0 158 -4,-0.9 -2,-0.2 -3,-0.8 -1,-0.2 0.925 122.6 39.6 -73.7 -48.0 -5.2 18.1 0.7 49 49 A T H <5S- 0 0 82 -4,-2.3 -2,-0.2 -5,-0.1 -3,-0.2 0.855 141.7 -0.4 -70.7 -44.7 -4.8 16.9 -3.0 50 50 A Y T <5S- 0 0 105 -4,-2.9 -3,-0.2 -5,-0.1 -4,-0.1 0.728 89.4-114.8-115.9 -48.5 -8.1 14.9 -3.4 51 51 A G S - 0 0 55 -7,-0.3 4,-2.4 1,-0.1 3,-0.3 -0.473 45.3-116.4 -69.4 144.1 -11.8 10.7 -2.6 54 54 A W H > S+ 0 0 124 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.788 120.9 60.3 -52.7 -26.0 -12.2 7.0 -3.6 55 55 A T H > S+ 0 0 95 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.961 108.1 40.0 -62.7 -55.1 -10.2 8.1 -6.6 56 56 A G H > S+ 0 0 0 -3,-0.3 4,-2.6 2,-0.2 -2,-0.2 0.787 114.9 54.1 -65.6 -33.3 -7.2 9.2 -4.5 57 57 A V H X S+ 0 0 23 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.962 113.4 39.9 -66.9 -54.6 -7.6 6.1 -2.2 58 58 A E H X S+ 0 0 112 -4,-2.3 4,-2.4 2,-0.2 -2,-0.2 0.897 116.4 53.3 -60.0 -42.3 -7.5 3.6 -5.0 59 59 A A H X S+ 0 0 26 -4,-2.4 4,-2.5 -5,-0.2 5,-0.2 0.923 108.9 48.4 -56.4 -50.0 -4.8 5.8 -6.6 60 60 A L H X S+ 0 0 33 -4,-2.6 4,-2.8 1,-0.2 5,-0.2 0.923 112.4 48.0 -57.8 -48.8 -2.7 5.7 -3.4 61 61 A I H X S+ 0 0 19 -4,-2.3 4,-2.8 1,-0.2 -1,-0.2 0.876 111.2 51.3 -63.6 -38.3 -3.1 1.9 -3.1 62 62 A R H X S+ 0 0 159 -4,-2.4 4,-2.2 2,-0.2 -1,-0.2 0.927 114.5 41.9 -63.5 -47.0 -2.1 1.4 -6.8 63 63 A I H X S+ 0 0 115 -4,-2.5 4,-2.8 2,-0.2 -2,-0.2 0.887 117.0 48.1 -68.3 -40.7 1.1 3.5 -6.5 64 64 A L H X S+ 0 0 10 -4,-2.8 4,-2.7 -5,-0.2 -2,-0.2 0.916 111.8 49.9 -65.3 -45.7 1.9 1.9 -3.1 65 65 A Q H X S+ 0 0 78 -4,-2.8 4,-3.0 2,-0.2 -2,-0.2 0.900 113.4 46.3 -57.0 -48.4 1.3 -1.6 -4.5 66 66 A Q H X S+ 0 0 84 -4,-2.2 4,-1.8 2,-0.2 -2,-0.2 0.945 112.4 49.8 -59.6 -52.2 3.5 -0.8 -7.5 67 67 A L H X S+ 0 0 39 -4,-2.8 4,-1.5 1,-0.2 -2,-0.2 0.887 113.8 46.4 -54.0 -44.0 6.2 0.7 -5.2 68 68 A L H X S+ 0 0 6 -4,-2.7 4,-2.4 1,-0.2 5,-0.3 0.966 105.2 60.4 -60.2 -55.1 6.1 -2.4 -3.0 69 69 A F H X S+ 0 0 103 -4,-3.0 4,-2.4 1,-0.3 -2,-0.2 0.784 104.5 49.8 -47.6 -39.9 6.1 -4.7 -6.0 70 70 A I H X S+ 0 0 80 -4,-1.8 4,-2.4 2,-0.2 -1,-0.3 0.966 117.1 38.7 -63.6 -52.8 9.6 -3.3 -7.1 71 71 A H H X S+ 0 0 77 -4,-1.5 4,-1.8 -3,-0.3 -2,-0.2 0.698 117.0 53.0 -71.1 -20.7 11.1 -3.7 -3.6 72 72 A F H X S+ 0 0 93 -4,-2.4 4,-2.0 2,-0.2 -1,-0.2 0.844 109.1 48.3 -81.7 -40.6 9.2 -7.1 -3.1 73 73 A R H X S+ 0 0 168 -4,-2.4 4,-2.2 -5,-0.3 -2,-0.2 0.953 116.6 42.7 -62.1 -52.2 10.6 -8.4 -6.4 74 74 A I H X S+ 0 0 60 -4,-2.4 4,-2.1 1,-0.2 -2,-0.2 0.924 112.6 55.0 -57.0 -48.1 14.1 -7.3 -5.4 75 75 A G H < S+ 0 0 27 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.817 108.9 47.8 -55.1 -38.6 13.4 -8.6 -1.9 76 76 A C H < S+ 0 0 114 -4,-2.0 -1,-0.2 -3,-0.2 -2,-0.2 0.938 123.0 31.9 -68.6 -50.3 12.5 -12.1 -3.4 77 77 A R H < S+ 0 0 208 -4,-2.2 2,-0.2 -5,-0.1 -2,-0.2 0.996 117.0 52.3 -69.7 -71.8 15.6 -12.3 -5.6 78 78 A H S < S- 0 0 107 -4,-2.1 -1,-0.0 -5,-0.2 0, 0.0 -0.507 74.6-140.1 -72.2 135.3 18.2 -10.4 -3.5 79 79 A S + 0 0 96 -2,-0.2 3,-0.2 2,-0.1 -1,-0.1 0.957 32.1 176.6 -56.1 -56.1 18.8 -11.4 0.1 80 80 A R - 0 0 84 1,-0.2 2,-2.2 2,-0.1 -2,-0.0 0.919 13.3-167.7 44.6 67.8 19.1 -7.8 1.1 81 81 A I S S- 0 0 132 1,-0.2 -1,-0.2 2,-0.0 3,-0.1 -0.495 81.2 -47.1 -79.3 64.4 19.5 -8.3 4.9 82 82 A G S S+ 0 0 44 -2,-2.2 2,-1.5 -3,-0.2 3,-0.4 0.824 93.6 155.1 67.0 35.3 19.0 -4.6 5.4 83 83 A I + 0 0 71 1,-0.2 -1,-0.2 3,-0.0 5,-0.1 -0.571 11.9 140.6 -90.3 66.7 21.5 -3.8 2.6 84 84 A I + 0 0 165 -2,-1.5 -1,-0.2 -3,-0.1 2,-0.1 0.937 57.1 69.6 -70.6 -51.9 20.0 -0.4 1.9 85 85 A Q S S- 0 0 59 -3,-0.4 5,-0.0 3,-0.1 4,-0.0 -0.431 96.9-117.7 -65.8 141.2 23.4 1.1 1.4 86 86 A Q S S+ 0 0 123 -2,-0.1 2,-0.3 2,-0.0 -1,-0.1 0.870 103.7 40.7 -47.9 -47.9 25.3 -0.1 -1.8 87 87 A R S S- 0 0 63 1,-0.1 4,-0.2 2,-0.0 -2,-0.1 -0.736 83.7-131.1 -98.4 152.9 28.0 -1.7 0.4 88 88 A R S S+ 0 0 141 -2,-0.3 -3,-0.1 2,-0.1 3,-0.1 0.952 103.8 26.4 -63.7 -51.7 27.3 -3.6 3.7 89 89 A T S S- 0 0 121 1,-0.3 2,-0.4 -3,-0.1 -4,-0.1 0.992 134.3 -14.7 -77.7 -75.7 29.9 -1.6 5.6 90 90 A R S S- 0 0 165 -5,-0.0 -1,-0.3 -4,-0.0 -2,-0.1 -0.997 73.1-106.5-142.7 128.4 30.5 1.8 4.0 91 91 A N S S+ 0 0 71 -2,-0.4 2,-1.8 -4,-0.2 5,-0.1 -0.040 97.4 14.1 -51.6 153.5 29.4 3.1 0.6 92 92 A G S S+ 0 0 12 4,-0.2 2,-1.7 3,-0.1 -1,-0.2 -0.587 73.9 155.5 79.3 -77.6 32.0 3.6 -2.2 93 93 A A S S- 0 0 82 -2,-1.8 2,-0.3 -6,-0.1 3,-0.1 -0.387 70.7 -16.8 59.3 -80.7 34.8 1.6 -0.4 94 94 A S S S+ 0 0 98 -2,-1.7 -2,-0.1 1,-0.1 0, 0.0 -0.952 135.2 11.0-154.9 137.8 36.7 0.6 -3.6 95 95 A K 0 0 193 -2,-0.3 -1,-0.1 1,-0.0 -3,-0.1 0.970 360.0 360.0 52.0 61.3 35.7 0.6 -7.3 96 96 A S 0 0 136 -3,-0.1 -4,-0.2 -5,-0.1 -2,-0.1 0.888 360.0 360.0 -47.9 360.0 32.5 2.6 -6.3