==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-JUL-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 17-MAY-13 2M8D . COMPND 2 MOLECULE: RNA (5'-R(*UP*GP*AP*AP*GP*GP*AP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.CLERY,R.SINHA,O.ANCZUKOW,A.CORRIONERO,A.MOURSY,G.DAUBNER, . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6021.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 50.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 24.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 106 B M 0 0 143 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 112.1 3.4 -12.2 -17.6 2 107 B A - 0 0 85 1,-0.1 0, 0.0 2,-0.1 0, 0.0 0.811 360.0-168.4 34.5 56.1 4.7 -13.1 -14.1 3 108 B P - 0 0 115 0, 0.0 -1,-0.1 0, 0.0 8,-0.0 -0.104 30.2-178.6 -70.5 167.3 2.8 -10.2 -12.5 4 109 B R - 0 0 96 2,-0.2 3,-0.1 4,-0.1 -2,-0.1 0.354 35.9-131.1-142.3 -8.3 3.2 -8.8 -9.0 5 110 B G S S+ 0 0 81 1,-0.2 2,-0.3 0, 0.0 0, 0.0 0.672 79.8 80.5 62.3 19.3 0.6 -6.1 -8.9 6 111 B R S S- 0 0 201 1,-0.0 -1,-0.2 2,-0.0 -2,-0.2 -0.899 91.2 -69.7-146.7 169.3 3.2 -3.7 -7.5 7 112 B Y S S+ 0 0 232 -2,-0.3 -1,-0.0 -3,-0.1 0, 0.0 -0.265 74.7 95.2 -62.8 150.6 6.2 -1.5 -8.5 8 113 B G S S- 0 0 21 0, 0.0 -4,-0.1 0, 0.0 -2,-0.0 -0.823 82.3 -25.9 151.5 174.5 9.4 -3.2 -9.8 9 114 B P - 0 0 74 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.348 66.9-136.7 -50.0 111.1 11.2 -4.3 -12.9 10 115 B P - 0 0 70 0, 0.0 36,-0.0 0, 0.0 34,-0.0 0.845 50.9 -62.1 -49.7 -58.1 8.2 -4.8 -15.3 11 116 B S S S+ 0 0 30 -8,-0.0 33,-0.1 -3,-0.0 0, 0.0 0.525 116.9 30.7-166.2 -30.7 8.9 -8.0 -17.2 12 117 B R S S- 0 0 75 33,-0.1 32,-0.1 1,-0.0 31,-0.0 0.479 76.1-157.0-132.0 -8.7 12.0 -8.5 -19.4 13 118 B R - 0 0 110 32,-0.1 2,-0.3 30,-0.1 30,-0.1 0.182 15.2-127.8 53.8-175.6 14.7 -6.2 -18.0 14 119 B S - 0 0 36 1,-0.1 3,-0.1 29,-0.1 44,-0.1 -0.976 34.5-176.5-162.4 179.6 17.6 -4.9 -20.1 15 120 B E S S+ 0 0 173 -2,-0.3 2,-0.3 42,-0.2 -1,-0.1 0.422 88.3 39.0-149.4 -31.2 21.3 -4.4 -20.8 16 121 B N S S+ 0 0 11 41,-0.3 41,-0.7 2,-0.0 2,-0.2 -0.747 75.0 177.7-140.5 78.7 21.6 -2.3 -24.0 17 122 B R E -A 56 0A 98 -2,-0.3 2,-0.3 39,-0.2 39,-0.2 -0.490 10.5-174.5 -87.3 158.0 18.8 0.3 -24.0 18 123 B V E -A 55 0A 0 37,-1.4 37,-1.7 -2,-0.2 71,-0.3 -0.968 26.9-115.8-146.7 142.2 18.1 3.1 -26.6 19 124 B V E -AB 54 88A 17 69,-0.5 69,-2.4 -2,-0.3 2,-0.4 -0.400 17.1-152.6 -75.9 159.5 15.5 5.9 -26.5 20 125 B V E +AB 53 87A 0 33,-2.5 33,-0.6 67,-0.3 2,-0.3 -0.883 24.9 171.6-133.1 102.9 12.7 6.0 -29.0 21 126 B S E +AB 52 86A 39 65,-1.2 65,-3.2 -2,-0.4 31,-0.2 -0.846 53.0 44.6-117.8 150.6 11.5 9.6 -29.5 22 127 B G S S+ 0 0 44 29,-2.3 30,-0.2 -2,-0.3 -1,-0.2 0.321 78.4 153.8 101.0 -2.7 9.1 11.2 -32.0 23 128 B L - 0 0 10 28,-1.1 -1,-0.3 -3,-0.2 62,-0.1 -0.138 47.5-108.4 -53.4 145.2 6.7 8.3 -31.2 24 129 B P > - 0 0 12 0, 0.0 3,-1.6 0, 0.0 27,-0.3 -0.347 26.8-110.2 -74.4 162.4 2.9 8.9 -31.7 25 130 B P T 3 S+ 0 0 113 0, 0.0 -2,-0.1 0, 0.0 27,-0.0 0.626 117.6 69.0 -68.3 -12.6 0.6 9.1 -28.6 26 131 B S T 3 S+ 0 0 12 2,-0.0 52,-0.2 51,-0.0 53,-0.1 0.701 80.4 106.8 -72.7 -23.0 -0.7 5.7 -29.8 27 132 B G < + 0 0 11 -3,-1.6 2,-0.3 50,-0.1 22,-0.1 -0.087 41.3 167.8 -65.5 158.6 2.6 4.1 -28.9 28 133 B S > - 0 0 25 20,-0.1 4,-1.2 18,-0.0 3,-0.4 -0.939 51.4 -96.1-158.1 168.7 3.1 1.7 -26.0 29 134 B W H > S+ 0 0 82 -2,-0.3 4,-1.0 1,-0.2 3,-0.1 0.831 120.7 59.2 -64.5 -30.1 5.8 -0.7 -24.7 30 135 B Q H > S+ 0 0 90 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.862 108.3 42.7 -66.6 -37.1 3.8 -3.6 -26.3 31 136 B D H 4 S+ 0 0 21 -3,-0.4 -1,-0.2 1,-0.2 45,-0.2 0.683 103.2 66.8 -84.7 -17.9 4.0 -2.1 -29.8 32 137 B L H >X S+ 0 0 3 -4,-1.2 4,-2.1 1,-0.2 3,-0.6 0.844 105.2 43.0 -72.4 -32.2 7.7 -1.1 -29.5 33 138 B K H 3X S+ 0 0 49 -4,-1.0 4,-1.1 1,-0.2 9,-0.2 0.877 105.9 63.1 -77.7 -38.6 8.8 -4.7 -29.4 34 139 B D H 3< S+ 0 0 126 -4,-1.0 -1,-0.2 1,-0.2 -2,-0.2 0.392 118.4 26.4 -65.0 1.6 6.4 -5.7 -32.2 35 140 B H H X4 S+ 0 0 47 -3,-0.6 3,-1.5 -4,-0.1 4,-0.2 0.595 111.1 59.9-136.7 -40.4 8.3 -3.4 -34.6 36 141 B M H >X S+ 0 0 0 -4,-2.1 3,-1.6 1,-0.3 4,-1.0 0.634 81.3 94.0 -68.6 -11.6 11.9 -3.0 -33.4 37 142 B R T 3< S+ 0 0 183 -4,-1.1 -1,-0.3 1,-0.3 -3,-0.1 0.688 73.9 67.4 -47.4 -21.4 11.9 -6.8 -33.9 38 143 B E T <4 S+ 0 0 144 -3,-1.5 -1,-0.3 1,-0.2 -2,-0.2 0.903 98.1 48.5 -66.2 -42.7 13.3 -5.8 -37.3 39 144 B A T <4 S- 0 0 5 -3,-1.6 2,-0.3 1,-0.2 -2,-0.2 0.760 131.6 -66.9 -68.4 -27.7 16.6 -4.5 -35.8 40 145 B G S < S- 0 0 16 -4,-1.0 2,-1.7 25,-0.1 -1,-0.2 -0.975 79.1 -32.5 162.5-167.5 16.9 -7.7 -33.7 41 146 B D - 0 0 86 -2,-0.3 17,-2.2 -3,-0.1 -4,-0.1 -0.568 59.9-171.0 -87.2 77.9 15.4 -9.7 -30.9 42 147 B V E +C 57 0A 0 -2,-1.7 15,-0.3 15,-0.3 3,-0.1 -0.436 12.2 173.7 -63.0 141.7 14.0 -6.9 -28.7 43 148 B C E + 0 0 42 13,-2.4 2,-0.3 1,-0.3 14,-0.2 0.563 57.9 31.8-128.1 -23.8 12.8 -8.3 -25.4 44 149 B Y E +C 56 0A 11 12,-1.5 12,-2.4 -32,-0.1 -1,-0.3 -0.968 53.3 166.1-139.6 155.8 11.9 -5.2 -23.4 45 150 B A E -C 55 0A 3 -2,-0.3 2,-0.3 10,-0.3 10,-0.3 -0.953 13.6-158.3-151.9 165.1 10.6 -1.7 -23.9 46 151 B D E -C 54 0A 56 8,-2.7 8,-2.9 -2,-0.3 2,-0.4 -0.983 8.8-153.0-147.6 153.6 9.1 1.1 -21.8 47 152 B V E -C 53 0A 22 -2,-0.3 6,-0.2 6,-0.3 -18,-0.1 -0.950 16.3-163.0-132.4 147.3 6.9 4.0 -22.7 48 153 B Y - 0 0 93 4,-2.2 5,-0.1 -2,-0.4 -1,-0.1 0.227 38.1-127.8-113.8 11.0 6.3 7.4 -21.2 49 154 B R S S+ 0 0 222 3,-0.2 4,-0.1 1,-0.1 -2,-0.0 0.639 90.6 87.5 59.2 17.4 3.0 8.2 -23.0 50 155 B D S S- 0 0 138 2,-0.5 -1,-0.1 -26,-0.1 3,-0.1 0.186 117.1 -74.9-136.1 15.2 4.4 11.5 -24.2 51 156 B G S S+ 0 0 15 1,-0.4 -29,-2.3 -27,-0.3 -28,-1.1 0.505 108.7 82.6 100.5 7.0 6.2 10.8 -27.6 52 157 B T E +A 21 0A 45 -31,-0.2 -4,-2.2 -30,-0.2 -2,-0.5 -0.943 42.4 136.2-140.7 159.2 9.2 9.1 -25.9 53 158 B G E -AC 20 47A 0 -33,-0.6 -33,-2.5 -2,-0.3 2,-0.3 -0.947 37.0-106.4-175.8-170.3 10.2 5.7 -24.5 54 159 B V E -AC 19 46A 2 -8,-2.9 -8,-2.7 -35,-0.3 2,-0.3 -0.935 21.7-174.8-137.5 162.0 12.9 3.0 -24.4 55 160 B V E -AC 18 45A 0 -37,-1.7 -37,-1.4 -2,-0.3 2,-0.3 -0.979 2.9-168.6-153.5 156.5 13.6 -0.4 -25.9 56 161 B E E -AC 17 44A 8 -12,-2.4 -13,-2.4 -2,-0.3 -12,-1.5 -0.989 6.7-147.9-152.4 155.4 16.3 -3.2 -25.6 57 162 B F E - C 0 42A 0 -41,-0.7 -41,-0.3 -15,-0.3 -15,-0.3 -0.764 36.2-103.2-124.2 163.6 17.5 -6.4 -27.3 58 163 B V S S+ 0 0 66 -17,-2.2 2,-0.3 -2,-0.2 -16,-0.1 0.545 111.1 39.7 -62.7 -8.4 19.1 -9.7 -26.4 59 164 B R S >> S- 0 0 163 -43,-0.1 3,-1.1 -18,-0.1 4,-0.7 -0.987 75.0-137.0-147.8 133.8 22.4 -8.3 -27.8 60 165 B K H 3> S+ 0 0 162 -2,-0.3 4,-1.6 1,-0.3 3,-0.2 0.710 104.0 62.2 -63.6 -20.7 23.9 -4.8 -27.6 61 166 B E H 3> S+ 0 0 132 1,-0.2 4,-1.0 2,-0.2 -1,-0.3 0.815 98.2 54.6 -76.0 -29.4 24.8 -4.9 -31.3 62 167 B D H <> S+ 0 0 39 -3,-1.1 4,-0.8 2,-0.2 -1,-0.2 0.695 106.0 56.3 -74.8 -19.0 21.2 -5.2 -32.4 63 168 B M H X S+ 0 0 21 -4,-0.7 4,-0.9 2,-0.2 3,-0.5 0.933 106.1 44.5 -78.0 -53.0 20.5 -2.1 -30.4 64 169 B T H < S+ 0 0 74 -4,-1.6 -2,-0.2 1,-0.3 -1,-0.2 0.765 112.6 56.7 -63.5 -21.4 23.1 0.2 -32.2 65 170 B Y H >X>S+ 0 0 91 -4,-1.0 4,-1.5 1,-0.2 3,-1.1 0.817 101.0 56.1 -74.5 -31.7 21.6 -1.5 -35.3 66 171 B A H 3<5S+ 0 0 0 -4,-0.8 -2,-0.2 -3,-0.5 21,-0.2 0.664 107.9 48.8 -74.7 -17.6 18.2 -0.2 -34.3 67 172 B V T 3<5S+ 0 0 37 -4,-0.9 -1,-0.3 3,-0.2 -2,-0.1 -0.095 115.6 41.9-113.2 34.2 19.5 3.4 -34.1 68 173 B R T <45S+ 0 0 172 -3,-1.1 -2,-0.2 -5,-0.1 -3,-0.1 0.390 131.8 17.1-143.3 -17.5 21.2 3.3 -37.6 69 174 B K T <5S+ 0 0 91 -4,-1.5 -3,-0.2 -5,-0.1 -2,-0.1 0.548 131.5 42.5-123.5 -25.8 18.6 1.4 -39.7 70 175 B L S > - 0 0 3 4,-1.5 3,-1.8 -2,-0.3 4,-0.4 -0.937 36.9-105.6-141.8 162.6 0.8 1.1 -33.5 78 183 B H T 3 S+ 0 0 103 -2,-0.3 -51,-0.1 1,-0.3 -1,-0.0 0.651 107.6 77.1 -59.7 -20.6 -2.5 -0.7 -32.6 79 184 B E T 3 S- 0 0 118 2,-0.1 -1,-0.3 -53,-0.1 3,-0.1 0.634 115.2-106.1 -72.0 -13.1 -4.5 2.5 -32.9 80 185 B G S < S+ 0 0 54 -3,-1.8 2,-0.3 1,-0.4 -2,-0.1 0.666 84.5 93.1 101.4 20.5 -4.3 2.2 -36.7 81 186 B E - 0 0 98 -4,-0.4 -4,-1.5 2,-0.0 -1,-0.4 -0.872 53.6-145.0-140.2 171.5 -1.8 4.9 -37.6 82 187 B T E +D 76 0B 64 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.899 15.4 167.7-139.0 161.6 1.9 5.4 -38.2 83 188 B A E -D 75 0B 28 -8,-1.9 -8,-1.5 -2,-0.3 2,-0.1 -0.959 38.6 -90.5-164.7 160.5 4.7 7.9 -37.7 84 189 B Y E -D 74 0B 106 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.389 35.3-146.1 -72.0 157.2 8.6 8.1 -37.9 85 190 B I E -D 73 0B 0 -12,-1.6 -13,-2.3 -15,-0.2 -12,-0.7 -0.950 8.4-150.8-123.6 151.7 10.7 7.4 -34.9 86 191 B R E -B 21 0A 110 -65,-3.2 -65,-1.2 -2,-0.3 -15,-0.1 -0.778 22.7-159.1-118.4 78.8 14.0 9.0 -33.9 87 192 B V E -B 20 0A 9 -2,-0.5 2,-0.3 -67,-0.2 -67,-0.3 -0.280 9.4-164.4 -57.8 144.5 15.8 6.2 -32.0 88 193 B K E -B 19 0A 117 -69,-2.4 -69,-0.5 -17,-0.0 3,-0.1 -0.854 33.7-105.1-126.7 168.8 18.6 7.4 -29.6 89 194 B V S S- 0 0 88 -2,-0.3 2,-0.2 -71,-0.3 -2,-0.0 0.727 79.9 -73.4 -60.2 -29.5 21.5 5.7 -27.8 90 195 B D 0 0 78 -72,-0.2 -1,-0.2 -74,-0.0 -72,-0.1 -0.691 360.0 360.0 143.6 163.9 19.7 5.9 -24.4 91 196 B G 0 0 102 -2,-0.2 -37,-0.1 -3,-0.1 -74,-0.0 -0.233 360.0 360.0 176.3 360.0 18.9 8.5 -21.8