==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-SEP-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 19-JUN-13 2M9R . COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.MONTI,T.RICHARD . 40 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5588.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 14 35.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 35.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 218 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 116.8 23.2 24.7 -2.6 2 2 A A - 0 0 74 1,-0.0 2,-0.6 2,-0.0 0, 0.0 -0.744 360.0-142.1 -86.3 130.3 26.6 25.9 -1.1 3 3 A E - 0 0 175 -2,-0.4 2,-0.6 2,-0.0 -1,-0.0 -0.797 13.8-151.2 -92.2 115.0 26.6 27.6 2.4 4 4 A F + 0 0 199 -2,-0.6 2,-0.3 2,-0.0 -2,-0.0 -0.782 22.6 170.7 -90.1 119.8 29.1 30.6 2.6 5 5 A R - 0 0 187 -2,-0.6 2,-0.5 0, 0.0 -2,-0.0 -0.987 20.8-159.6-131.7 141.0 30.6 31.2 6.1 6 6 A H + 0 0 172 -2,-0.3 3,-0.1 1,-0.1 -2,-0.0 -0.967 39.1 126.5-121.7 115.5 33.5 33.5 7.3 7 7 A D + 0 0 111 -2,-0.5 2,-0.4 1,-0.3 -1,-0.1 0.602 69.8 23.0-133.2 -55.0 35.1 32.6 10.8 8 8 A S S S+ 0 0 115 1,-0.1 -1,-0.3 3,-0.0 3,-0.0 -0.985 79.9 89.6-126.5 128.7 39.0 32.2 10.6 9 9 A G S S- 0 0 61 -2,-0.4 2,-0.4 -3,-0.1 -1,-0.1 -0.117 87.7 -0.9-168.8 -85.2 41.3 33.7 7.9 10 10 A Y + 0 0 221 2,-0.0 2,-0.4 0, 0.0 -2,-0.0 -0.973 53.6 170.8-131.1 116.8 43.0 37.2 8.2 11 11 A E + 0 0 182 -2,-0.4 2,-0.4 -3,-0.0 -3,-0.0 -0.810 23.6 136.1-127.1 88.2 42.3 39.5 11.3 12 12 A V + 0 0 105 -2,-0.4 3,-0.1 1,-0.1 -2,-0.0 -0.940 17.0 169.2-135.0 110.4 44.6 42.5 11.3 13 13 A H S S+ 0 0 178 -2,-0.4 2,-0.6 1,-0.2 -1,-0.1 0.951 71.0 38.3 -87.0 -62.5 43.1 46.0 12.1 14 14 A H S S- 0 0 173 2,-0.0 2,-0.5 0, 0.0 -1,-0.2 -0.826 76.4-152.0 -92.7 119.3 46.2 48.4 12.5 15 15 A Q - 0 0 81 -2,-0.6 2,-1.6 -3,-0.1 4,-0.2 -0.787 9.4-144.2 -89.2 124.4 49.0 47.7 10.0 16 16 A K S S+ 0 0 216 -2,-0.5 2,-0.2 2,-0.1 -1,-0.1 -0.418 79.0 62.3 -84.7 64.3 52.6 48.6 11.3 17 17 A L S S- 0 0 117 -2,-1.6 2,-1.4 2,-0.0 -2,-0.1 -0.919 104.1 -82.4-173.7 153.5 53.8 49.8 7.7 18 18 A V - 0 0 128 -2,-0.2 2,-1.3 1,-0.1 -2,-0.1 -0.535 50.7-161.2 -70.1 93.0 52.7 52.6 5.1 19 19 A F + 0 0 144 -2,-1.4 2,-0.8 -4,-0.2 -1,-0.1 -0.642 13.0 179.8 -86.8 91.4 49.7 50.6 3.6 20 20 A F - 0 0 153 -2,-1.3 2,-1.7 2,-0.1 4,-0.1 -0.836 17.4-156.6 -92.8 109.0 49.0 52.2 0.2 21 21 A A + 0 0 99 -2,-0.8 2,-0.3 2,-0.1 -1,-0.1 -0.452 63.1 90.6 -82.4 66.8 46.0 50.3 -1.5 22 22 A E S S- 0 0 147 -2,-1.7 2,-0.9 2,-0.0 -2,-0.1 -0.980 86.6-101.5-157.5 146.1 47.0 51.5 -5.1 23 23 A D - 0 0 177 -2,-0.3 2,-0.4 2,-0.0 -2,-0.1 -0.604 40.8-153.3 -76.3 102.8 49.3 50.0 -7.9 24 24 A V + 0 0 147 -2,-0.9 2,-0.2 -4,-0.1 -1,-0.0 -0.666 38.1 127.2 -85.7 125.2 52.5 52.1 -7.6 25 25 A G - 0 0 73 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.622 45.8-137.0 178.2 111.8 54.6 52.5 -10.9 26 26 A S - 0 0 105 -2,-0.2 2,-1.3 1,-0.1 -2,-0.0 -0.620 18.7-129.6 -82.3 132.9 55.9 55.6 -12.8 27 27 A N + 0 0 172 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 -0.630 42.8 157.0 -81.0 90.1 55.6 55.8 -16.6 28 28 A K + 0 0 161 -2,-1.3 2,-1.3 1,-0.2 -1,-0.2 0.934 14.3 179.6 -81.9 -52.0 59.2 56.7 -17.7 29 29 A G + 0 0 85 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.637 60.3 57.0 88.0 -86.3 59.4 55.5 -21.4 30 30 A A - 0 0 97 -2,-1.3 2,-0.3 0, 0.0 0, 0.0 -0.660 66.3-172.7 -82.3 133.4 63.0 56.3 -22.4 31 31 A I - 0 0 154 -2,-0.3 2,-0.2 2,-0.1 -2,-0.0 -0.965 25.1-113.3-126.2 142.9 66.0 54.9 -20.3 32 32 A I + 0 0 172 -2,-0.3 0, 0.0 2,-0.0 0, 0.0 -0.505 52.4 133.4 -76.9 140.1 69.8 55.7 -20.6 33 33 A G - 0 0 62 -2,-0.2 2,-0.7 0, 0.0 -2,-0.1 -0.174 25.7-173.1 173.1 80.8 72.3 53.0 -21.8 34 34 A L + 0 0 170 2,-0.0 2,-0.4 1,-0.0 -2,-0.0 -0.783 14.8 163.0 -89.6 112.3 74.9 53.9 -24.5 35 35 A M + 0 0 164 -2,-0.7 2,-0.4 2,-0.0 -1,-0.0 -0.886 7.0 149.9-132.6 100.0 76.8 50.6 -25.7 36 36 A V + 0 0 103 -2,-0.4 4,-0.1 1,-0.1 -2,-0.0 -0.859 11.2 145.5-133.0 94.3 78.8 51.0 -29.0 37 37 A G S S- 0 0 82 -2,-0.4 3,-0.1 2,-0.1 -1,-0.1 0.836 71.4 -37.4 -92.9 -89.0 81.9 48.7 -29.1 38 38 A G S S+ 0 0 78 1,-0.3 2,-0.6 0, 0.0 0, 0.0 0.687 125.3 10.3-102.7 -92.0 82.8 47.2 -32.6 39 39 A V 0 0 154 -3,-0.0 -1,-0.3 0, 0.0 -2,-0.1 -0.858 360.0 360.0 -92.3 115.2 79.7 46.2 -34.8 40 40 A V 0 0 176 -2,-0.6 -4,-0.1 -3,-0.1 0, 0.0 -0.838 360.0 360.0 -93.4 360.0 76.4 47.5 -33.2