==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-SEP-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 19-JUN-13 2M9S . COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.MONTI,T.RICHARD . 40 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5496.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 11 27.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 27.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 209 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 117.4 31.2 57.3 -5.1 2 2 A A - 0 0 85 2,-0.0 2,-0.5 0, 0.0 0, 0.0 -0.740 360.0-173.7 -85.6 131.0 32.9 56.8 -1.6 3 3 A E - 0 0 149 -2,-0.4 2,-0.6 2,-0.0 0, 0.0 -0.969 11.1-153.3-126.4 113.3 32.6 59.6 1.1 4 4 A F - 0 0 186 -2,-0.5 2,-0.6 2,-0.0 -2,-0.0 -0.779 8.4-147.0 -90.5 120.0 34.5 59.1 4.4 5 5 A R - 0 0 208 -2,-0.6 2,-0.5 0, 0.0 -2,-0.0 -0.771 10.6-159.3 -88.0 119.5 33.0 61.0 7.4 6 6 A H + 0 0 179 -2,-0.6 3,-0.1 1,-0.1 -2,-0.0 -0.892 34.8 135.7-101.2 122.9 35.7 62.3 9.9 7 7 A D + 0 0 155 -2,-0.5 2,-0.4 1,-0.2 -1,-0.1 0.617 69.5 9.4-130.1 -60.5 34.4 63.0 13.6 8 8 A S S S+ 0 0 122 1,-0.1 -1,-0.2 2,-0.0 0, 0.0 -0.985 82.6 95.7-134.7 125.4 36.8 61.6 16.3 9 9 A G - 0 0 74 -2,-0.4 2,-0.5 -3,-0.1 -1,-0.1 0.097 40.4-168.1 154.2 81.7 40.4 60.1 15.7 10 10 A Y - 0 0 202 1,-0.1 3,-0.1 0, 0.0 -2,-0.0 -0.758 9.7-171.3 -88.5 127.1 43.6 62.1 16.1 11 11 A E S S+ 0 0 122 -2,-0.5 2,-0.3 1,-0.2 8,-0.1 0.409 80.5 33.2 -89.8 -1.6 46.9 60.6 14.7 12 12 A V + 0 0 99 6,-0.1 -1,-0.2 1,-0.0 6,-0.0 -0.898 60.0 141.3-154.9 120.4 49.2 63.5 16.3 13 13 A H S S- 0 0 174 -2,-0.3 2,-0.2 -3,-0.1 -2,-0.1 0.541 81.1 -17.5-122.7 -77.6 48.5 65.4 19.7 14 14 A H S S+ 0 0 182 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.696 93.6 112.9-137.0 83.2 51.7 66.1 21.8 15 15 A Q - 0 0 102 -2,-0.2 2,-1.9 2,-0.1 4,-0.2 -0.903 60.4-134.3-151.8 120.5 54.6 63.8 20.6 16 16 A K S S+ 0 0 220 -2,-0.3 2,-0.2 2,-0.1 -2,-0.0 -0.490 75.4 84.7 -80.7 76.8 57.9 65.2 18.8 17 17 A L S S- 0 0 111 -2,-1.9 2,-1.1 2,-0.0 -2,-0.1 -0.882 85.8-107.5-169.1 139.2 58.1 62.5 16.0 18 18 A V - 0 0 136 -2,-0.2 -2,-0.1 1,-0.0 -6,-0.1 -0.623 48.5-133.5 -75.1 98.1 56.4 62.2 12.4 19 19 A F - 0 0 106 -2,-1.1 2,-0.6 -4,-0.2 -1,-0.0 -0.271 6.0-131.6 -62.5 136.6 53.9 59.4 13.2 20 20 A F - 0 0 175 -2,-0.0 -1,-0.1 2,-0.0 4,-0.1 -0.788 22.8-138.8 -89.3 117.5 53.5 56.4 10.8 21 21 A A - 0 0 46 -2,-0.6 2,-2.3 2,-0.1 -1,-0.0 -0.305 30.5 -94.0 -69.4 156.4 49.8 55.6 9.9 22 22 A E S S+ 0 0 208 1,-0.1 2,-0.2 -2,-0.0 -1,-0.1 -0.290 101.8 84.3 -75.7 63.2 48.4 51.9 9.7 23 23 A D + 0 0 153 -2,-2.3 2,-0.3 0, 0.0 -2,-0.1 -0.709 44.3 144.1-159.5 95.4 48.9 51.5 5.8 24 24 A V + 0 0 130 -2,-0.2 2,-0.1 -4,-0.1 -4,-0.0 -0.882 16.2 131.9-141.0 103.9 52.6 50.4 4.9 25 25 A G + 0 0 75 -2,-0.3 2,-0.3 2,-0.0 -1,-0.0 -0.532 21.7 171.1-162.4 82.8 52.7 48.0 1.9 26 26 A S - 0 0 89 -2,-0.1 2,-0.6 1,-0.0 -2,-0.0 -0.779 40.1-108.9 -99.1 143.9 55.2 48.7 -1.0 27 27 A N + 0 0 177 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.564 50.8 161.4 -73.8 112.9 55.9 46.2 -3.9 28 28 A K + 0 0 181 -2,-0.6 3,-0.1 1,-0.0 2,-0.0 -0.995 18.5 102.8-135.6 141.4 59.5 44.8 -3.4 29 29 A G + 0 0 72 -2,-0.3 2,-0.4 1,-0.2 -1,-0.0 -0.209 69.2 42.7-172.8 -87.7 61.2 41.6 -4.8 30 30 A A + 0 0 107 2,-0.0 2,-0.4 -2,-0.0 -1,-0.2 -0.699 50.4 176.9 -84.9 130.1 63.8 41.8 -7.7 31 31 A I - 0 0 165 -2,-0.4 2,-0.2 -3,-0.1 -3,-0.0 -0.910 18.4-155.5-131.6 99.5 66.5 44.6 -7.6 32 32 A I + 0 0 166 -2,-0.4 -2,-0.0 2,-0.0 0, 0.0 -0.576 32.0 141.5 -82.2 140.4 69.0 44.1 -10.6 33 33 A G - 0 0 74 -2,-0.2 2,-0.4 2,-0.0 -1,-0.0 -0.259 22.6-172.1-178.7 79.9 72.6 45.5 -10.4 34 34 A L - 0 0 147 2,-0.0 2,-0.7 1,-0.0 6,-0.0 -0.688 16.9-142.5 -84.9 127.7 75.5 43.5 -12.0 35 35 A M - 0 0 152 -2,-0.4 2,-0.7 4,-0.1 4,-0.0 -0.803 14.4-170.7 -91.2 111.5 79.1 44.9 -11.3 36 36 A V + 0 0 121 -2,-0.7 4,-0.1 1,-0.1 -2,-0.0 -0.892 60.1 66.7-103.2 103.6 81.4 44.4 -14.4 37 37 A G S S+ 0 0 61 -2,-0.7 3,-0.2 2,-0.0 -1,-0.1 -0.137 100.7 13.6-174.8 -83.0 85.0 45.2 -13.2 38 38 A G S S+ 0 0 71 1,-0.3 2,-0.8 2,-0.1 -2,-0.0 0.965 129.7 22.6 -81.6 -77.4 86.9 43.1 -10.7 39 39 A V 0 0 135 1,-0.2 -1,-0.3 -4,-0.0 -4,-0.1 -0.867 360.0 360.0 -93.6 105.3 85.1 39.7 -10.2 40 40 A V 0 0 170 -2,-0.8 -1,-0.2 -3,-0.2 -5,-0.1 0.927 360.0 360.0 -87.9 360.0 83.0 39.2 -13.5