==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 21-MAR-10 3M9A . COMPND 2 MOLECULE: PUTATIVE DNA-BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THURINGIENSIS; . AUTHOR M.A.SCHUMACHER,L.NI . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6381.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 67.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 11.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 43.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 1 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A F 0 0 275 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -40.6 -5.0 39.0 2.7 2 7 A Y - 0 0 207 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.988 360.0-136.2-139.0 129.7 -1.4 38.7 4.2 3 8 A T - 0 0 137 -2,-0.4 2,-0.4 2,-0.0 0, 0.0 -0.599 21.1-155.7 -88.1 146.9 1.5 36.4 3.3 4 9 A L - 0 0 89 -2,-0.2 2,-0.7 4,-0.0 3,-0.1 -0.965 13.9-142.1-130.6 131.5 3.5 34.7 6.1 5 10 A N > - 0 0 98 -2,-0.4 4,-1.4 1,-0.1 3,-0.3 -0.851 11.2-161.7 -93.1 114.2 7.0 33.4 6.3 6 11 A I H > S+ 0 0 41 -2,-0.7 4,-2.2 1,-0.2 5,-0.2 0.759 85.6 61.2 -70.6 -24.4 6.9 30.2 8.4 7 12 A A H > S+ 0 0 61 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.908 102.7 49.1 -68.5 -44.5 10.7 30.3 9.1 8 13 A E H > S+ 0 0 106 -3,-0.3 4,-2.6 2,-0.2 -2,-0.2 0.923 111.1 50.8 -59.2 -46.9 10.6 33.7 10.9 9 14 A I H X S+ 0 0 19 -4,-1.4 4,-2.8 2,-0.2 5,-0.2 0.967 111.7 45.9 -55.3 -58.4 7.7 32.5 13.1 10 15 A A H X S+ 0 0 7 -4,-2.2 4,-2.6 1,-0.2 -1,-0.2 0.885 111.5 54.1 -51.2 -45.1 9.5 29.3 14.1 11 16 A E H < S+ 0 0 113 -4,-2.6 4,-0.5 2,-0.2 -1,-0.2 0.904 110.9 45.8 -53.0 -45.8 12.6 31.5 14.7 12 17 A R H >< S+ 0 0 175 -4,-2.6 3,-1.3 -3,-0.2 -2,-0.2 0.943 112.9 48.7 -65.2 -48.4 10.6 33.7 17.0 13 18 A I H >< S+ 0 0 9 -4,-2.8 3,-1.8 1,-0.3 7,-0.6 0.896 104.8 59.7 -59.5 -42.6 9.0 30.8 18.9 14 19 A G T 3< S+ 0 0 38 -4,-2.6 -1,-0.3 1,-0.3 -2,-0.2 0.652 101.2 56.0 -59.8 -18.7 12.4 29.1 19.4 15 20 A N T < S+ 0 0 127 -3,-1.3 2,-0.3 -4,-0.5 -1,-0.3 0.132 101.3 65.4 -99.5 21.2 13.6 32.2 21.2 16 21 A D <> - 0 0 83 -3,-1.8 4,-2.5 1,-0.1 5,-0.2 -0.860 66.8-156.8-151.9 102.1 10.8 32.0 23.8 17 22 A D H > S+ 0 0 127 -2,-0.3 4,-2.2 1,-0.2 5,-0.2 0.813 91.6 47.7 -51.9 -43.5 10.5 29.0 26.2 18 23 A C H > S+ 0 0 13 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.966 112.2 46.4 -69.4 -53.6 6.8 29.2 26.9 19 24 A A H > S+ 0 0 2 1,-0.2 4,-2.1 2,-0.2 -2,-0.2 0.921 113.9 51.7 -49.8 -49.4 5.6 29.6 23.3 20 25 A Y H X S+ 0 0 92 -4,-2.5 4,-2.0 -7,-0.6 -1,-0.2 0.903 113.3 41.1 -58.2 -51.9 7.9 26.7 22.3 21 26 A Q H X S+ 0 0 65 -4,-2.2 4,-1.8 2,-0.2 -1,-0.2 0.797 111.2 56.4 -68.0 -34.3 6.7 24.3 25.0 22 27 A V H X S+ 0 0 0 -4,-2.6 4,-0.6 2,-0.2 -1,-0.2 0.894 111.9 45.2 -61.3 -39.9 3.0 25.2 24.5 23 28 A L H >< S+ 0 0 0 -4,-2.1 3,-0.8 -5,-0.3 -2,-0.2 0.910 114.2 46.1 -68.8 -44.6 3.5 24.3 20.8 24 29 A M H >< S+ 0 0 39 -4,-2.0 3,-2.1 1,-0.2 -1,-0.2 0.733 93.9 77.2 -77.5 -24.4 5.3 21.1 21.4 25 30 A A H 3< S+ 0 0 6 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.866 89.0 60.0 -51.5 -37.0 2.9 19.9 24.1 26 31 A F T << S+ 0 0 0 -3,-0.8 8,-2.6 -4,-0.6 2,-0.6 0.639 89.6 82.8 -70.2 -14.2 0.5 19.0 21.3 27 32 A I B < S-A 33 0A 36 -3,-2.1 6,-0.2 6,-0.2 5,-0.1 -0.846 76.0-148.1 -93.0 123.7 3.1 16.6 19.8 28 33 A N > - 0 0 56 4,-3.1 3,-2.0 -2,-0.6 -2,-0.1 -0.038 31.5 -81.6 -88.5-176.3 2.9 13.2 21.6 29 34 A E T 3 S+ 0 0 188 1,-0.3 -1,-0.0 2,-0.1 -2,-0.0 0.804 128.7 45.2 -54.5 -36.0 5.3 10.4 22.5 30 35 A N T 3 S- 0 0 134 2,-0.1 -1,-0.3 3,-0.0 3,-0.1 0.253 122.3-100.3 -95.0 11.0 5.1 8.9 19.0 31 36 A G S < S+ 0 0 39 -3,-2.0 2,-0.3 1,-0.3 -2,-0.1 0.396 80.9 134.4 88.0 -2.0 5.5 12.2 17.1 32 37 A E - 0 0 128 -5,-0.1 -4,-3.1 1,-0.1 -1,-0.3 -0.601 60.1-114.8 -86.4 139.0 1.7 12.4 16.5 33 38 A A B -A 27 0A 56 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.451 41.0-170.3 -66.8 142.5 -0.3 15.6 17.0 34 39 A Q - 0 0 62 -8,-2.6 44,-0.3 -2,-0.1 2,-0.3 -0.880 23.6-104.7-135.5 165.3 -2.9 15.3 19.8 35 40 A M + 0 0 111 -2,-0.3 2,-0.3 42,-0.1 42,-0.2 -0.657 38.3 176.5 -87.3 143.2 -5.9 17.1 21.4 36 41 A L B -B 76 0B 15 40,-2.1 40,-2.8 -2,-0.3 2,-0.2 -0.990 25.6-136.3-148.1 139.5 -5.5 18.9 24.7 37 42 A N > - 0 0 79 -2,-0.3 4,-1.6 38,-0.2 3,-0.2 -0.520 42.3-101.2 -79.5 162.5 -7.6 21.0 27.0 38 43 A K H > S+ 0 0 51 36,-0.3 4,-2.0 1,-0.2 5,-0.1 0.838 121.7 53.9 -50.9 -39.4 -6.0 24.2 28.5 39 44 A T H > S+ 0 0 57 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.898 103.4 55.3 -66.6 -43.5 -5.4 22.4 31.9 40 45 A A H > S+ 0 0 21 -3,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.933 108.8 48.7 -52.0 -50.3 -3.5 19.5 30.3 41 46 A V H X S+ 0 0 0 -4,-1.6 4,-2.1 1,-0.2 -2,-0.2 0.944 111.9 47.0 -59.1 -51.4 -1.1 21.9 28.6 42 47 A A H < S+ 0 0 7 -4,-2.0 5,-0.5 1,-0.2 -1,-0.2 0.808 115.2 47.3 -61.6 -32.1 -0.4 23.9 31.9 43 48 A E H < S+ 0 0 134 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.870 110.4 53.4 -74.2 -39.3 0.1 20.6 33.8 44 49 A M H < S+ 0 0 99 -4,-2.7 2,-0.3 -5,-0.2 -2,-0.2 0.826 109.8 47.3 -65.8 -40.3 2.4 19.2 31.0 45 50 A I S < S- 0 0 13 -4,-2.1 2,-1.6 -5,-0.2 7,-0.1 -0.805 89.8-117.3-106.1 149.1 4.8 22.1 30.9 46 51 A Q S S+ 0 0 156 -2,-0.3 2,-0.3 2,-0.0 -3,-0.1 -0.351 76.6 101.6 -90.2 64.3 6.3 23.7 34.1 47 52 A L S S- 0 0 55 -2,-1.6 -2,-0.1 -5,-0.5 0, 0.0 -0.913 78.0 -86.8-133.9 158.3 4.9 27.2 33.8 48 53 A S > - 0 0 62 -2,-0.3 4,-2.5 1,-0.1 5,-0.2 -0.226 35.1-113.4 -66.6 153.3 2.0 28.8 35.6 49 54 A K H > S+ 0 0 104 1,-0.2 4,-3.6 2,-0.2 5,-0.4 0.930 115.1 54.9 -50.4 -53.1 -1.6 28.5 34.4 50 55 A P H > S+ 0 0 98 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.914 112.0 43.8 -50.3 -48.3 -1.9 32.3 33.6 51 56 A T H > S+ 0 0 60 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.968 118.8 42.3 -58.9 -55.8 1.2 32.1 31.4 52 57 A V H X S+ 0 0 0 -4,-2.5 4,-2.5 1,-0.2 -1,-0.2 0.913 115.2 48.9 -61.7 -45.0 0.2 29.0 29.6 53 58 A F H X S+ 0 0 55 -4,-3.6 4,-3.0 -5,-0.2 -1,-0.2 0.923 111.0 49.2 -62.6 -46.9 -3.5 29.9 29.2 54 59 A A H X S+ 0 0 53 -4,-2.2 4,-2.5 -5,-0.4 -1,-0.2 0.868 112.3 49.6 -60.7 -37.8 -2.7 33.3 27.8 55 60 A T H X S+ 0 0 27 -4,-2.0 4,-2.6 -5,-0.2 -2,-0.2 0.913 110.4 49.7 -65.6 -46.4 -0.2 31.7 25.3 56 61 A V H X S+ 0 0 0 -4,-2.5 4,-1.9 2,-0.2 -2,-0.2 0.941 111.9 49.4 -55.8 -51.8 -2.8 29.1 24.3 57 62 A N H X S+ 0 0 63 -4,-3.0 4,-1.8 1,-0.2 3,-0.3 0.932 112.9 45.3 -53.1 -51.7 -5.4 31.9 23.7 58 63 A S H X S+ 0 0 74 -4,-2.5 4,-3.0 1,-0.2 -1,-0.2 0.889 109.8 55.4 -64.5 -38.7 -3.0 34.0 21.6 59 64 A F H X>S+ 0 0 23 -4,-2.6 5,-2.7 1,-0.2 6,-1.4 0.813 107.6 49.4 -63.5 -32.1 -1.9 31.0 19.6 60 65 A Y H <5S+ 0 0 102 -4,-1.9 3,-0.2 -3,-0.3 -1,-0.2 0.857 110.7 50.8 -69.9 -36.9 -5.5 30.3 18.7 61 66 A C H <5S+ 0 0 108 -4,-1.8 -2,-0.2 1,-0.2 -3,-0.1 0.946 109.2 50.3 -61.5 -47.7 -5.8 34.0 17.7 62 67 A A H <5S- 0 0 48 -4,-3.0 -1,-0.2 -5,-0.1 -2,-0.2 0.657 117.3-117.8 -62.6 -20.3 -2.7 33.6 15.5 63 68 A G T <5S+ 0 0 28 -4,-0.5 18,-0.4 -3,-0.2 19,-0.3 0.653 82.7 119.3 87.0 18.5 -4.3 30.6 14.0 64 69 A Y S -C 73 0B 66 3,-3.1 3,-1.9 -2,-0.2 2,-0.2 -0.947 64.7 -22.2-159.3 119.4 -16.5 19.7 23.4 71 76 A G T 3 S- 0 0 84 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.575 123.4 -47.2 63.1-135.2 -18.9 19.1 26.3 72 77 A R T 3 S+ 0 0 232 -2,-0.2 -1,-0.2 -3,-0.1 2,-0.2 0.099 131.7 69.5-108.3 19.7 -19.4 22.7 27.5 73 78 A S E < S- C 0 70B 71 -3,-1.9 -3,-3.1 -5,-0.0 2,-0.3 -0.531 80.3-108.5-118.4-167.1 -15.6 23.3 27.3 74 79 A K E - C 0 69B 68 -5,-0.2 2,-0.3 -2,-0.2 -36,-0.3 -0.841 16.0-154.7-126.5 154.3 -13.1 23.6 24.6 75 80 A I E - C 0 68B 15 -7,-2.1 -7,-1.8 -2,-0.3 2,-0.4 -0.991 10.8-141.5-132.9 152.7 -10.2 21.6 23.1 76 81 A Y E +BC 36 67B 6 -40,-2.8 -40,-2.1 -2,-0.3 2,-0.3 -0.848 20.4 167.3-117.1 135.2 -7.1 22.6 21.2 77 82 A T E - C 0 66B 42 -11,-1.3 -11,-4.1 -2,-0.4 2,-0.2 -0.950 44.5 -94.5-134.6 155.2 -5.3 20.9 18.3 78 83 A L E - C 0 65B 13 -44,-0.3 -13,-0.3 -2,-0.3 -14,-0.1 -0.518 38.7-135.0 -66.7 138.3 -2.6 22.3 16.1 79 84 A S > - 0 0 11 -15,-2.2 4,-2.7 -2,-0.2 5,-0.2 -0.243 35.6 -92.9 -74.6 178.9 -3.9 23.8 12.8 80 85 A D H > S+ 0 0 138 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.860 134.4 52.5 -62.5 -34.6 -2.2 23.0 9.5 81 86 A L H > S+ 0 0 42 -18,-0.4 4,-2.2 2,-0.2 -1,-0.2 0.908 107.9 51.5 -63.1 -44.4 -0.1 26.2 10.2 82 87 A G H > S+ 0 0 0 -19,-0.3 4,-2.4 -18,-0.3 -2,-0.2 0.943 109.5 48.6 -57.2 -52.2 0.7 24.7 13.6 83 88 A V H X S+ 0 0 55 -4,-2.7 4,-1.8 1,-0.2 -1,-0.2 0.883 109.7 52.8 -56.8 -41.5 1.9 21.4 12.2 84 89 A E H X S+ 0 0 108 -4,-2.0 4,-1.0 2,-0.2 -1,-0.2 0.892 109.1 49.1 -64.3 -40.8 4.0 23.3 9.6 85 90 A I H >X S+ 0 0 0 -4,-2.2 4,-1.2 1,-0.2 3,-0.7 0.926 108.8 53.2 -60.6 -47.4 5.8 25.3 12.3 86 91 A V H 3X S+ 0 0 0 -4,-2.4 4,-2.2 1,-0.2 -2,-0.2 0.853 102.7 60.6 -55.4 -36.6 6.4 22.1 14.3 87 92 A E H 3X S+ 0 0 82 -4,-1.8 4,-1.8 1,-0.2 -1,-0.2 0.827 97.5 56.6 -61.7 -36.5 8.1 20.6 11.2 88 93 A C H