==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-SEP-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 08-AUG-13 2MBY . COMPND 2 MOLECULE: RIBOSOMAL RNA-PROCESSING PROTEIN 7; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR J.LIN,Y.FENG,K.YE . 46 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5517.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 67.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 252 A G > 0 0 73 0, 0.0 4,-1.4 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 171.1 -11.8 -31.4 -18.9 2 253 A P H > + 0 0 104 0, 0.0 4,-1.1 0, 0.0 5,-0.1 0.809 360.0 45.9 -70.2 -30.4 -13.0 -29.4 -21.9 3 254 A E H > S+ 0 0 155 2,-0.2 4,-2.3 1,-0.2 3,-0.4 0.961 113.0 45.6 -76.1 -55.7 -14.9 -26.9 -19.7 4 255 A A H > S+ 0 0 55 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.811 110.6 57.7 -57.7 -30.8 -12.2 -26.3 -17.1 5 256 A D H X S+ 0 0 72 -4,-1.4 4,-2.3 2,-0.2 -1,-0.2 0.899 107.9 45.4 -67.4 -41.4 -9.8 -25.9 -20.0 6 257 A F H X S+ 0 0 164 -4,-1.1 4,-2.8 -3,-0.4 5,-0.3 0.963 115.3 44.8 -66.5 -53.8 -11.8 -23.1 -21.5 7 258 A Y H X S+ 0 0 172 -4,-2.3 4,-1.5 1,-0.2 -1,-0.2 0.817 113.5 54.7 -60.4 -31.0 -12.3 -21.2 -18.3 8 259 A R H X S+ 0 0 181 -4,-1.7 4,-2.3 -5,-0.3 5,-0.3 0.985 113.5 36.6 -66.7 -60.0 -8.7 -21.7 -17.5 9 260 A F H X S+ 0 0 134 -4,-2.3 4,-3.3 1,-0.2 5,-0.4 0.939 119.3 49.6 -58.6 -50.2 -7.2 -20.3 -20.7 10 261 A Q H X S+ 0 0 90 -4,-2.8 4,-1.0 -5,-0.2 -1,-0.2 0.844 110.4 53.7 -58.5 -34.8 -9.9 -17.5 -20.9 11 262 A V H X S+ 0 0 72 -4,-1.5 4,-0.9 -5,-0.3 -2,-0.2 0.980 122.4 24.8 -64.1 -59.7 -9.2 -16.7 -17.2 12 263 A R H < S+ 0 0 197 -4,-2.3 -2,-0.2 1,-0.2 -3,-0.2 0.942 120.9 55.6 -72.0 -50.6 -5.4 -16.2 -17.5 13 264 A E H < S+ 0 0 161 -4,-3.3 -3,-0.2 -5,-0.3 -1,-0.2 0.770 100.8 67.7 -54.3 -26.3 -5.4 -15.3 -21.2 14 265 A R H < S- 0 0 155 -4,-1.0 2,-0.3 -5,-0.4 -2,-0.2 0.987 106.9 -94.6 -57.4 -80.6 -7.9 -12.5 -20.3 15 266 A K < - 0 0 115 -4,-0.9 2,-0.4 -5,-0.1 -1,-0.2 -0.976 22.4-104.7 177.3-177.4 -5.8 -10.2 -18.2 16 267 A K + 0 0 118 -2,-0.3 -4,-0.0 1,-0.1 -3,-0.0 -0.960 44.3 138.5-139.3 118.7 -4.7 -9.2 -14.7 17 268 A Q S > S+ 0 0 117 -2,-0.4 4,-1.7 3,-0.1 5,-0.3 0.679 77.4 35.6-119.4 -66.0 -6.0 -6.1 -12.8 18 269 A E H > S+ 0 0 134 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.948 121.2 47.9 -58.4 -52.0 -6.7 -6.8 -9.1 19 270 A I H > S+ 0 0 80 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.777 106.4 63.3 -60.6 -26.5 -3.8 -9.3 -8.8 20 271 A N H > S+ 0 0 73 2,-0.2 4,-2.2 1,-0.2 -2,-0.2 0.992 109.0 34.4 -61.8 -64.5 -1.6 -6.7 -10.5 21 272 A Q H X S+ 0 0 155 -4,-1.7 4,-2.2 1,-0.2 -2,-0.2 0.859 117.6 57.6 -59.8 -36.4 -1.9 -3.9 -7.9 22 273 A L H X S+ 0 0 103 -4,-2.2 4,-2.2 -5,-0.3 -1,-0.2 0.956 108.3 43.5 -59.4 -53.3 -2.0 -6.6 -5.2 23 274 A L H X S+ 0 0 87 -4,-2.6 4,-2.4 1,-0.2 -1,-0.2 0.879 111.2 56.3 -60.6 -39.0 1.4 -8.2 -6.2 24 275 A S H X S+ 0 0 38 -4,-2.2 4,-2.1 -5,-0.2 -1,-0.2 0.896 107.8 48.2 -60.2 -41.3 2.9 -4.7 -6.6 25 276 A K H X S+ 0 0 116 -4,-2.2 4,-2.1 2,-0.2 -2,-0.2 0.937 110.6 50.0 -64.8 -48.0 1.9 -3.9 -3.0 26 277 A F H X S+ 0 0 138 -4,-2.2 4,-1.9 1,-0.2 -2,-0.2 0.889 110.1 51.8 -57.9 -40.8 3.4 -7.1 -1.7 27 278 A K H X S+ 0 0 124 -4,-2.4 4,-1.8 2,-0.2 -1,-0.2 0.919 106.7 52.8 -62.8 -44.4 6.6 -6.4 -3.6 28 279 A E H X S+ 0 0 76 -4,-2.1 4,-2.2 1,-0.2 5,-0.2 0.904 109.2 49.7 -57.8 -42.5 6.9 -3.0 -2.1 29 280 A D H X S+ 0 0 51 -4,-2.1 4,-2.7 1,-0.2 -1,-0.2 0.870 108.5 52.6 -64.9 -36.9 6.5 -4.5 1.4 30 281 A Q H X S+ 0 0 87 -4,-1.9 4,-1.8 2,-0.2 -1,-0.2 0.810 108.3 53.0 -67.9 -29.3 9.2 -7.0 0.5 31 282 A E H X S+ 0 0 114 -4,-1.8 4,-2.1 2,-0.2 -2,-0.2 0.956 114.1 38.4 -70.6 -52.7 11.5 -4.1 -0.5 32 283 A R H X S+ 0 0 146 -4,-2.2 4,-2.7 2,-0.2 5,-0.2 0.941 115.9 53.5 -63.9 -47.1 11.1 -2.1 2.7 33 284 A I H X S+ 0 0 56 -4,-2.7 4,-2.1 1,-0.2 -1,-0.2 0.907 108.5 50.1 -53.2 -46.0 11.2 -5.3 4.8 34 285 A K H X S+ 0 0 112 -4,-1.8 4,-2.2 1,-0.2 -1,-0.2 0.921 109.8 50.4 -60.4 -44.9 14.4 -6.3 3.1 35 286 A V H < S+ 0 0 103 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.916 109.9 50.7 -59.2 -44.0 16.0 -2.9 3.8 36 287 A M H < S+ 0 0 142 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.868 112.0 47.5 -61.5 -38.1 14.9 -3.2 7.4 37 288 A K H < S+ 0 0 115 -4,-2.1 2,-2.3 -5,-0.2 -1,-0.2 0.819 79.9 174.0 -73.0 -31.7 16.6 -6.6 7.6 38 289 A A < + 0 0 87 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.1 -0.347 60.0 45.9 61.2 -79.4 19.7 -5.3 5.9 39 290 A K S S- 0 0 178 -2,-2.3 -2,-0.0 1,-0.2 0, 0.0 -0.080 112.7 -52.7 -80.9-174.4 21.7 -8.5 6.3 40 291 A R - 0 0 193 1,-0.1 2,-0.9 -2,-0.0 -1,-0.2 0.014 57.2-103.8 -54.1 166.8 20.5 -12.1 5.6 41 292 A K S S+ 0 0 120 -3,-0.1 2,-0.3 2,-0.1 -1,-0.1 -0.321 87.6 99.6 -92.0 51.4 17.3 -13.4 7.2 42 293 A F S S- 0 0 154 -2,-0.9 3,-0.1 3,-0.0 -3,-0.1 -0.881 74.6-115.5-133.1 164.6 19.1 -15.4 9.8 43 294 A N - 0 0 100 -2,-0.3 3,-0.1 1,-0.1 -2,-0.1 -0.867 17.3-169.2-105.9 103.8 20.1 -15.2 13.5 44 295 A P S S+ 0 0 127 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.795 81.6 13.5 -59.1 -28.6 23.9 -15.0 13.9 45 296 A Y 0 0 206 -3,-0.1 -3,-0.0 0, 0.0 0, 0.0 -0.971 360.0 360.0-152.9 134.0 23.3 -15.5 17.7 46 297 A T 0 0 167 -2,-0.3 -3,-0.0 -3,-0.1 0, 0.0 -0.875 360.0 360.0-139.7 360.0 20.3 -16.5 19.8