==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-MAY-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 29-MAR-10 3MD4 . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR V.C.YEE,S.LEE . 12 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1410.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 5 41.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 41.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 127 A G 0 0 73 0, 0.0 12,-2.1 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 164.6 3.1 17.7 1.5 2 128 A Y E -A 12 0A 193 10,-0.2 2,-0.3 2,-0.0 10,-0.2 -0.997 360.0-172.3-154.6 149.9 3.7 18.0 5.2 3 129 A M E +A 11 0A 125 8,-2.3 8,-2.6 -2,-0.3 2,-0.3 -0.983 22.4 153.4-140.0 134.6 3.3 16.0 8.4 4 130 A L E +A 10 0A 103 -2,-0.3 2,-0.3 6,-0.2 6,-0.2 -0.993 12.0 173.1-158.0 162.1 3.9 17.4 11.9 5 131 A G E A 9 0A 21 4,-2.0 4,-2.3 -2,-0.3 -2,-0.0 -0.986 360.0 360.0-168.4 161.7 3.0 17.0 15.5 6 132 A S 0 0 177 -2,-0.3 -2,-0.0 2,-0.2 0, 0.0 -0.991 360.0 360.0-150.3 360.0 3.8 18.2 19.0 7 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 8 127 B G 0 0 98 0, 0.0 2,-0.3 0, 0.0 -2,-0.2 0.000 360.0 360.0 360.0-160.3 7.7 17.8 18.2 9 128 B Y E -A 5 0A 158 -4,-2.3 -4,-2.0 2,-0.0 2,-0.3 -0.974 360.0-167.8-147.0 153.1 8.5 16.6 14.7 10 129 B M E -A 4 0A 160 -2,-0.3 2,-0.4 -6,-0.2 -6,-0.2 -0.995 3.7-174.4-147.5 141.2 8.1 17.8 11.1 11 130 B L E -A 3 0A 94 -8,-2.6 -8,-2.3 -2,-0.3 2,-0.4 -0.999 6.5-174.2-135.6 130.0 8.4 16.1 7.6 12 131 B G E A 2 0A 67 -2,-0.4 -10,-0.2 -10,-0.2 -2,-0.0 -0.991 360.0 360.0-125.0 140.7 8.1 18.0 4.4 13 132 B S 0 0 141 -12,-2.1 -2,-0.0 -2,-0.4 0, 0.0 -0.832 360.0 360.0-145.7 360.0 8.0 16.5 0.9