==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-MAY-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 29-MAR-10 3MD5 . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR V.C.YEE,S.LEE . 12 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1436.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 127 A G 0 0 129 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-174.8 3.7 8.8 -5.7 2 128 A Y - 0 0 159 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.992 360.0-157.3-157.2 155.6 6.1 9.6 -2.9 3 129 A V - 0 0 143 -2,-0.3 2,-0.4 2,-0.0 0, 0.0 -0.995 11.3-178.4-136.2 129.7 9.6 9.2 -1.5 4 130 A L + 0 0 95 -2,-0.4 2,-0.4 2,-0.0 -2,-0.0 -0.994 8.6 174.4-125.9 140.1 10.7 9.5 2.1 5 131 A G 0 0 73 -2,-0.4 6,-0.1 6,-0.1 -2,-0.0 -0.999 360.0 360.0-145.6 144.6 14.2 9.1 3.3 6 132 A S 0 0 111 -2,-0.4 6,-0.1 6,-0.1 -2,-0.0 -0.951 360.0 360.0-150.0 360.0 16.1 9.5 6.5 7 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 8 127 B G 0 0 121 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 175.9 1.5 7.5 7.2 9 128 B Y - 0 0 144 2,-0.0 2,-0.4 0, 0.0 0, 0.0 -0.965 360.0-162.5-141.3 150.2 5.1 6.7 7.9 10 129 B V + 0 0 147 -2,-0.3 2,-0.4 2,-0.0 0, 0.0 -0.991 15.0 178.2-133.2 126.3 7.7 7.1 10.6 11 130 B L + 0 0 78 -2,-0.4 2,-0.4 -6,-0.1 -6,-0.1 -0.994 1.0 175.7-127.9 135.4 11.4 6.8 9.7 12 131 B G 0 0 72 -2,-0.4 -6,-0.1 -6,-0.1 -2,-0.0 -0.972 360.0 360.0-146.8 131.6 14.3 7.3 12.1 13 132 B S 0 0 164 -2,-0.4 -2,-0.0 0, 0.0 0, 0.0 -0.771 360.0 360.0-151.1 360.0 18.0 6.8 11.6